Wall clock time and date at job start Wed Apr 1 2020 02:57:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 O 1.42896 * 109.46841 * 2 1
4 4 C 1.35658 * 116.99729 * 179.97438 * 3 2 1
5 5 C 1.38707 * 120.15263 * 0.25065 * 4 3 2
6 6 C 1.38052 * 120.08752 * 180.28283 * 5 4 3
7 7 C 1.38549 * 120.38879 * 359.73726 * 6 5 4
8 8 C 1.37797 * 120.30018 * 359.97438 * 7 6 5
9 9 C 1.39701 * 119.90726 * 0.02562 * 8 7 6
10 10 C 1.47536 * 120.19092 * 179.97438 * 9 8 7
11 11 O 1.21595 * 119.99992 * 171.95666 * 10 9 8
12 12 N 1.34767 * 120.00018 * 351.95518 * 10 9 8
13 13 C 1.47569 * 125.67632 * 184.42628 * 12 10 9
14 14 C 1.55434 * 104.88252 * 156.03003 * 13 12 10
15 15 C 1.53667 * 101.31075 * 35.82782 * 14 13 12
16 16 C 1.53651 * 111.42102 * 204.76896 * 15 14 13
17 17 C 1.55181 * 101.42241 * 272.73716 * 16 15 14
18 18 N 1.47560 * 105.00364 * 324.50615 * 17 16 15
19 19 C 1.36938 * 125.67576 * 203.82835 * 18 17 16
20 20 H 1.07998 * 120.00405 * 180.02562 * 19 18 17
21 21 C 1.38821 * 119.99650 * 0.03943 * 19 18 17
22 22 N 1.31618 * 119.99971 * 0.02562 * 21 19 18
23 23 Si 1.86795 * 119.99780 * 179.97438 * 21 19 18
24 24 H 1.48508 * 109.46989 * 60.00519 * 23 21 19
25 25 H 1.48502 * 109.47099 * 179.97438 * 23 21 19
26 26 H 1.48501 * 109.47362 * 300.00443 * 23 21 19
27 27 C 1.47408 * 108.65413 * 23.86100 * 18 17 16
28 28 C 1.47405 * 125.67750 * 4.73384 * 12 10 9
29 29 H 1.08998 * 109.47241 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47707 * 300.00589 * 1 2 3
31 31 H 1.09006 * 109.47203 * 60.00536 * 1 2 3
32 32 H 1.08989 * 109.47234 * 239.99843 * 2 1 3
33 33 H 1.09002 * 109.46711 * 119.99533 * 2 1 3
34 34 H 1.08005 * 119.95569 * 0.02562 * 5 4 3
35 35 H 1.07996 * 119.80958 * 179.76461 * 6 5 4
36 36 H 1.08002 * 119.85296 * 179.97438 * 7 6 5
37 37 H 1.08000 * 120.04226 * 180.02562 * 8 7 6
38 38 H 1.08998 * 110.32986 * 275.02383 * 13 12 10
39 39 H 1.08997 * 110.33202 * 37.25389 * 13 12 10
40 40 H 1.08994 * 111.25344 * 277.75945 * 14 13 12
41 41 H 1.08996 * 110.95343 * 153.76505 * 14 13 12
42 42 H 1.09008 * 111.02946 * 30.77313 * 16 15 14
43 43 H 1.09003 * 111.03302 * 154.69707 * 16 15 14
44 44 H 1.08997 * 110.32929 * 205.62420 * 17 16 15
45 45 H 1.08998 * 110.42434 * 83.43228 * 17 16 15
46 46 H 0.96999 * 119.99630 * 179.97438 * 22 21 19
47 47 H 1.08993 * 109.98512 * 238.53796 * 27 18 17
48 48 H 1.09001 * 109.98092 * 117.22762 * 27 18 17
49 49 H 1.09005 * 109.98360 * 301.46390 * 28 12 10
50 50 H 1.08997 * 109.98879 * 62.72093 * 28 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3511 1.5250 0.0005
5 6 4.1990 0.4273 -0.0042
6 6 5.5674 0.6097 0.0023
7 6 6.1042 1.8869 0.0080
8 6 5.2768 2.9888 0.0068
9 6 3.8902 2.8186 0.0003
10 6 2.9984 3.9940 -0.0005
11 8 1.8010 3.8485 -0.1534
12 7 3.5111 5.2289 0.1684
13 6 2.7311 6.4766 0.2806
14 6 3.6565 7.4577 1.0532
15 6 5.0371 7.0652 0.5044
16 6 6.1566 7.4215 1.4947
17 6 6.4647 8.8890 1.0953
18 7 6.2895 8.9311 -0.3693
19 6 6.8695 9.8365 -1.2173
20 1 6.6768 9.7828 -2.2786
21 6 7.7055 10.8233 -0.7127
22 7 7.9409 10.8883 0.5806
23 14 8.4972 12.0579 -1.8695
24 1 7.4389 12.8154 -2.5846
25 1 9.3375 13.0003 -1.0878
26 1 9.3441 11.3398 -2.8556
27 6 5.3856 7.8370 -0.7677
28 6 4.9444 5.5588 0.2654
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3634 0.5139 0.8899
31 1 -0.3634 0.5138 -0.8901
32 1 1.8933 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8901
34 1 3.7881 -0.5716 -0.0087
35 1 6.2234 -0.2482 0.0024
36 1 7.1760 2.0196 0.0135
37 1 5.6997 3.9826 0.0109
38 1 2.5005 6.8694 -0.7097
39 1 1.8137 6.3005 0.8421
40 1 3.6007 7.2894 2.1286
41 1 3.4181 8.4928 0.8085
42 1 5.8020 7.3622 2.5238
43 1 7.0282 6.7841 1.3456
44 1 7.4897 9.1467 1.3617
45 1 5.7653 9.5700 1.5801
46 1 8.5253 11.5776 0.9330
47 1 5.8873 7.1789 -1.4770
48 1 4.4798 8.2463 -1.2150
49 1 5.3949 5.0208 1.0995
50 1 5.4508 5.2966 -0.6635
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001041812524.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:57:41
Heat of formation + Delta-G solvation = 11.526896 kcal
Electronic energy + Delta-G solvation = -30728.747910 eV
Core-core repulsion = 26723.138363 eV
Total energy + Delta-G solvation = -4005.609547 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.92472 -39.84147 -38.18694 -37.51632 -35.59555 -32.77788 -32.24892 -31.83296
-30.16865 -29.69119 -29.24149 -28.34270 -25.79602 -24.64811 -24.15585 -23.24788
-22.08724 -21.79562 -20.37177 -20.06308 -18.82556 -17.95673 -17.27394 -16.80930
-16.37809 -16.20475 -15.64637 -15.27998 -15.18889 -14.88187 -14.49392 -14.15873
-13.93959 -13.66514 -13.56990 -13.45832 -13.05385 -12.84990 -12.79996 -12.46598
-12.36996 -12.16242 -12.10968 -11.89123 -11.80081 -11.47114 -11.38470 -11.15257
-10.99743 -10.97966 -10.76819 -10.75889 -10.25231 -10.05192 -9.97631 -9.78628
-9.69819 -9.43613 -9.23226 -8.65909 -8.59187 -8.31915 -6.84981 -5.66784
-3.08084 0.74136 1.21274 2.90421 2.96327 3.05855 3.39875 3.44411
3.45372 3.73670 4.38325 4.46321 4.52818 4.63481 4.64003 4.73028
4.81229 4.86908 4.95278 4.98227 5.05377 5.11897 5.22969 5.34035
5.42580 5.47045 5.49363 5.53952 5.56413 5.64130 5.68996 5.80575
5.82179 5.91166 5.94863 6.01710 6.07459 6.16508 6.25235 6.26327
6.31034 6.39957 6.50653 6.52089 6.62471 6.71838 6.81067 7.21296
7.49289 7.60720 7.63330 7.83756 8.32708 8.34048 9.20631 9.81135
10.46095 11.37127
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.020605 B = 0.002465 C = 0.002331
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1358.563563 B =11354.130070 C =12007.888988
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.049 3.951
3 O -0.281 6.281
4 C 0.184 3.816
5 C -0.226 4.226
6 C -0.056 4.056
7 C -0.168 4.168
8 C -0.083 4.083
9 C -0.167 4.167
10 C 0.574 3.426
11 O -0.527 6.527
12 N -0.613 5.613
13 C 0.110 3.890
14 C -0.114 4.114
15 C -0.083 4.083
16 C -0.132 4.132
17 C 0.155 3.845
18 N -0.603 5.603
19 C -0.222 4.222
20 H 0.076 0.924
21 C -0.011 4.011
22 N -0.923 5.923
23 Si 0.914 3.086
24 H -0.286 1.286
25 H -0.290 1.290
26 H -0.285 1.285
27 C 0.151 3.849
28 C 0.106 3.894
29 H 0.076 0.924
30 H 0.067 0.933
31 H 0.068 0.932
32 H 0.061 0.939
33 H 0.060 0.940
34 H 0.131 0.869
35 H 0.127 0.873
36 H 0.131 0.869
37 H 0.169 0.831
38 H 0.069 0.931
39 H 0.075 0.925
40 H 0.074 0.926
41 H 0.090 0.910
42 H 0.062 0.938
43 H 0.063 0.937
44 H 0.105 0.895
45 H 0.013 0.987
46 H 0.252 0.748
47 H 0.025 0.975
48 H 0.025 0.975
49 H 0.079 0.921
50 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.773 -22.242 2.220 23.665
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.027 4.027
3 O -0.192 6.192
4 C 0.136 3.864
5 C -0.245 4.245
6 C -0.074 4.074
7 C -0.186 4.186
8 C -0.100 4.100
9 C -0.171 4.171
10 C 0.364 3.636
11 O -0.404 6.404
12 N -0.348 5.348
13 C -0.012 4.012
14 C -0.152 4.152
15 C -0.084 4.084
16 C -0.171 4.171
17 C 0.030 3.970
18 N -0.330 5.330
19 C -0.351 4.351
20 H 0.094 0.906
21 C -0.206 4.206
22 N -0.571 5.571
23 Si 0.744 3.256
24 H -0.212 1.212
25 H -0.216 1.216
26 H -0.212 1.212
27 C 0.025 3.975
28 C -0.017 4.017
29 H 0.094 0.906
30 H 0.086 0.914
31 H 0.087 0.913
32 H 0.079 0.921
33 H 0.079 0.921
34 H 0.149 0.851
35 H 0.145 0.855
36 H 0.148 0.852
37 H 0.186 0.814
38 H 0.087 0.913
39 H 0.093 0.907
40 H 0.093 0.907
41 H 0.108 0.892
42 H 0.081 0.919
43 H 0.082 0.918
44 H 0.123 0.877
45 H 0.031 0.969
46 H 0.063 0.937
47 H 0.043 0.957
48 H 0.043 0.957
49 H 0.097 0.903
50 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -8.506 -22.062 2.128 23.741
hybrid contribution 0.586 0.311 -0.633 0.917
sum -7.920 -21.751 1.495 23.196
Atomic orbital electron populations
1.21735 0.92541 1.02442 1.03988 1.22861 0.96376 0.82333 1.01089
1.86371 1.17874 1.28307 1.86662 1.19002 0.83031 0.92610 0.91768
1.21197 0.94406 0.97811 1.11037 1.21145 0.94218 0.97633 0.94447
1.21091 1.00357 0.92132 1.05034 1.22766 0.91658 1.02298 0.93317
1.19300 0.93750 0.91010 1.13011 1.17652 0.87414 0.81411 0.77125
1.90801 1.15067 1.85135 1.49445 1.48507 1.07957 1.06116 1.72190
1.22371 0.95061 0.83146 1.00583 1.22696 0.93394 0.99587 0.99484
1.21605 0.96175 0.92242 0.98422 1.22887 0.96147 1.01395 0.96621
1.21963 1.03223 0.88531 0.83287 1.44610 1.52853 1.32163 1.03332
1.19024 1.21106 1.05440 0.89483 0.90589 1.24773 1.00463 0.99257
0.96134 1.69782 1.41256 1.35667 1.10408 0.86163 0.79015 0.80856
0.79518 1.21247 1.21599 1.21178 1.21134 0.93506 0.90259 0.92608
1.22480 0.81847 0.96165 1.01158 0.90572 0.91399 0.91317 0.92097
0.92143 0.85080 0.85507 0.85156 0.81432 0.91286 0.90703 0.90730
0.89187 0.91915 0.91825 0.87682 0.96886 0.93692 0.95713 0.95734
0.90313 0.90310
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16
2 C 0.05 0.44 5.46 37.16 0.20 0.64 16
3 O -0.28 -3.87 8.25 -40.39 -0.33 -4.20 16
4 C 0.18 2.43 6.69 -38.69 -0.26 2.17 16
5 C -0.23 -2.27 9.03 -39.48 -0.36 -2.63 16
6 C -0.06 -0.50 10.03 -39.53 -0.40 -0.90 16
7 C -0.17 -1.65 10.02 -39.63 -0.40 -2.05 16
8 C -0.08 -0.98 8.59 -39.20 -0.34 -1.32 16
9 C -0.17 -2.37 5.88 -104.84 -0.62 -2.99 16
10 C 0.57 9.46 7.80 -12.47 -0.10 9.36 16
11 O -0.53 -10.21 15.51 -16.43 -0.25 -10.47 16
12 N -0.61 -9.21 3.34 -175.37 -0.59 -9.80 16
13 C 0.11 1.61 6.87 -2.16 -0.01 1.59 16
14 C -0.11 -1.67 5.87 -25.09 -0.15 -1.81 16
15 C -0.08 -1.33 0.61 -154.02 -0.09 -1.42 16
16 C -0.13 -2.26 5.93 -25.24 -0.15 -2.41 16
17 C 0.15 3.54 5.83 -2.31 -0.01 3.53 16
18 N -0.60 -14.77 3.41 -170.41 -0.58 -15.35 16
19 C -0.22 -6.03 10.28 -15.06 -0.15 -6.19 16
20 H 0.08 2.01 7.83 -52.49 -0.41 1.59 16
21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16
22 N -0.92 -26.22 10.09 55.49 0.56 -25.66 16
23 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16
24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
27 C 0.15 2.98 6.39 -3.64 -0.02 2.96 16
28 C 0.11 1.45 4.12 -3.65 -0.02 1.44 16
29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
32 H 0.06 0.45 7.65 -51.94 -0.40 0.06 16
33 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16
34 H 0.13 0.98 6.30 -52.48 -0.33 0.65 16
35 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16
36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16
37 H 0.17 1.88 2.78 -56.96 -0.16 1.72 16
38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
39 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16
40 H 0.07 1.02 7.82 -51.93 -0.41 0.61 16
41 H 0.09 1.41 7.94 -51.93 -0.41 1.00 16
42 H 0.06 0.96 7.78 -51.92 -0.40 0.55 16
43 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16
44 H 0.11 2.74 5.89 -51.93 -0.31 2.44 16
45 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16
46 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16
47 H 0.03 0.49 7.44 -51.93 -0.39 0.10 16
48 H 0.02 0.50 7.78 -51.93 -0.40 0.09 16
49 H 0.08 0.96 6.37 -51.93 -0.33 0.63 16
50 H 0.08 1.05 6.11 -51.93 -0.32 0.73 16
LS Contribution 387.30 15.07 5.84 5.84
Total: -1.00 -32.89 387.30 -10.56 -43.45
By element:
Atomic # 1 Polarization: 8.29 SS G_CDS: -7.60 Total: 0.70 kcal
Atomic # 6 Polarization: 1.37 SS G_CDS: -2.58 Total: -1.21 kcal
Atomic # 7 Polarization: -50.20 SS G_CDS: -0.61 Total: -50.81 kcal
Atomic # 8 Polarization: -14.08 SS G_CDS: -0.59 Total: -14.67 kcal
Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -32.89 -10.56 -43.45 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001041812524.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.973 kcal
(2) G-P(sol) polarization free energy of solvation -32.886 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.087 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.527 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds