Wall clock time and date at job start Wed Apr 1 2020 03:19:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 O 1.21273 * 119.99987 * 2 1
4 4 N 1.34773 * 119.99765 * 180.02562 * 2 1 3
5 5 C 1.46594 * 119.75486 * 359.97438 * 4 2 1
6 6 C 1.53882 * 110.72476 * 227.72036 * 5 4 2
7 7 C 1.51985 * 107.29073 * 308.21474 * 6 5 4
8 8 H 1.09002 * 110.98587 * 302.72028 * 7 6 5
9 9 C 1.53670 * 115.02782 * 175.54393 * 7 6 5
10 10 C 1.55291 * 101.89123 * 205.57755 * 9 7 6
11 11 N 1.48571 * 107.00296 * 22.54419 * 10 9 7
12 12 C 1.46896 * 111.00226 * 126.20289 * 11 10 9
13 13 C 1.50695 * 109.47265 * 69.87394 * 12 11 10
14 14 C 1.38296 * 119.93408 * 90.00270 * 13 12 11
15 15 C 1.38098 * 120.07029 * 179.72599 * 14 13 12
16 16 C 1.38874 * 119.93287 * 0.24950 * 15 14 13
17 17 O 1.35745 * 120.07194 * 179.97438 * 16 15 14
18 18 C 1.34830 * 117.00000 * 354.46775 * 17 16 15
19 19 H 1.07993 * 119.99847 * 5.04988 * 18 17 16
20 20 C 1.38657 * 120.00052 * 185.05927 * 18 17 16
21 21 N 1.31557 * 119.99954 * 179.97438 * 20 18 17
22 22 Si 1.86799 * 120.00057 * 359.97438 * 20 18 17
23 23 H 1.48500 * 109.46932 * 90.00324 * 22 20 18
24 24 H 1.48498 * 109.47326 * 210.00579 * 22 20 18
25 25 H 1.48500 * 109.46999 * 330.00300 * 22 20 18
26 26 C 1.38885 * 119.85897 * 359.97438 * 16 15 14
27 27 C 1.38090 * 119.93070 * 0.02562 * 26 16 15
28 28 C 1.45948 * 107.08778 * 4.89262 * 11 10 9
29 29 H 1.09002 * 109.58131 * 86.72797 * 28 11 10
30 30 C 1.47795 * 119.75387 * 179.97438 * 4 2 1
31 31 H 1.08998 * 109.47098 * 240.00092 * 1 2 3
32 32 H 1.09008 * 109.47320 * 359.97438 * 1 2 3
33 33 H 1.08998 * 109.47489 * 119.99444 * 1 2 3
34 34 H 1.09006 * 109.22399 * 107.40444 * 5 4 2
35 35 H 1.08996 * 109.19688 * 348.02390 * 5 4 2
36 36 H 1.08999 * 109.89982 * 188.76535 * 6 5 4
37 37 H 1.09001 * 109.95427 * 67.68980 * 6 5 4
38 38 H 1.09000 * 110.94700 * 87.42799 * 9 7 6
39 39 H 1.09000 * 110.94851 * 323.73118 * 9 7 6
40 40 H 1.08995 * 109.92788 * 263.20648 * 10 9 7
41 41 H 1.09000 * 109.92565 * 141.87812 * 10 9 7
42 42 H 1.09006 * 109.47033 * 309.86908 * 12 11 10
43 43 H 1.09009 * 109.47143 * 189.87614 * 12 11 10
44 44 H 1.07999 * 119.96542 * 359.97438 * 14 13 12
45 45 H 1.08004 * 120.03585 * 180.27783 * 15 14 13
46 46 H 0.97002 * 119.99941 * 180.02562 * 21 20 18
47 47 H 1.08004 * 120.02920 * 180.02562 * 26 16 15
48 48 H 1.08004 * 119.96512 * 180.02562 * 27 26 16
49 49 H 1.09000 * 110.06833 * 247.96419 * 30 4 2
50 50 H 1.09000 * 110.06610 * 9.42387 * 30 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0503 0.0000
4 7 2.1808 -1.1672 -0.0005
5 6 1.4424 -2.4336 -0.0005
6 6 2.0049 -3.3920 1.0639
7 6 3.5061 -3.4805 0.8439
8 1 3.7333 -3.8145 -0.1685
9 6 4.2677 -4.3153 1.8853
10 6 5.6888 -3.6929 1.8171
11 7 5.5368 -2.3223 1.2644
12 6 6.1578 -1.3264 2.1479
13 6 7.6563 -1.4785 2.1013
14 6 8.3931 -0.7713 1.1688
15 6 9.7670 -0.9042 1.1273
16 6 10.4083 -1.7532 2.0198
17 8 11.7587 -1.8864 1.9812
18 6 12.4075 -1.2570 0.9808
19 1 11.8636 -0.6139 0.3049
20 6 13.7730 -1.4357 0.8196
21 7 14.4060 -0.8220 -0.1569
22 14 14.7139 -2.5478 1.9889
23 1 14.7210 -3.9338 1.4557
24 1 16.1106 -2.0605 2.1194
25 1 14.0582 -2.5333 3.3212
26 6 9.6652 -2.4656 2.9520
27 6 8.2916 -2.3284 2.9885
28 6 4.1058 -2.0741 1.1207
29 1 3.7066 -1.6850 2.0574
30 6 3.6587 -1.1609 -0.0011
31 1 -0.3633 -0.5138 0.8900
32 1 -0.3634 1.0277 0.0005
33 1 -0.3634 -0.5137 -0.8900
34 1 1.5271 -2.8985 -0.9828
35 1 0.3921 -2.2360 0.2135
36 1 1.5547 -4.3781 0.9503
37 1 1.7986 -3.0029 2.0610
38 1 4.2891 -5.3674 1.6013
39 1 3.8346 -4.1898 2.8776
40 1 6.3244 -4.2891 1.1624
41 1 6.1216 -3.6446 2.8163
42 1 5.8086 -1.4789 3.1692
43 1 5.8837 -0.3250 1.8159
44 1 7.8938 -0.1112 0.4750
45 1 10.3423 -0.3481 0.4018
46 1 15.3612 -0.9473 -0.2699
47 1 10.1611 -3.1263 3.6477
48 1 7.7132 -2.8818 3.7134
49 1 4.0340 -1.5432 -0.9504
50 1 4.0285 -0.1493 0.1666
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001041860237.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:19:08
Heat of formation + Delta-G solvation = -22.879478 kcal
Electronic energy + Delta-G solvation = -30022.106707 eV
Core-core repulsion = 26015.005188 eV
Total energy + Delta-G solvation = -4007.101519 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-40.96137 -39.47375 -38.93344 -37.04034 -35.99932 -33.45815 -32.37297 -31.69669
-30.85683 -30.21548 -29.30018 -28.54119 -25.80601 -24.79376 -24.08938 -23.11979
-22.10495 -21.17964 -20.56617 -20.02605 -19.41266 -17.87302 -17.30968 -17.20202
-16.34617 -15.93493 -15.74269 -15.61843 -14.95606 -14.76236 -14.40387 -14.19679
-14.01734 -13.77320 -13.71497 -13.61985 -13.37377 -13.21674 -13.09279 -12.82915
-12.77247 -12.57674 -12.40929 -12.26931 -12.17934 -11.98821 -11.65652 -11.32645
-11.21399 -11.01828 -10.96575 -10.80229 -10.70450 -10.58463 -10.38894 -10.13510
-10.09696 -9.35758 -9.04617 -8.85058 -8.34713 -8.22029 -7.29367 -6.39730
-4.06200 2.15571 2.19564 2.32337 2.60859 3.22807 3.26360 3.40992
3.80713 4.09451 4.24913 4.28840 4.32227 4.38591 4.57361 4.66720
4.79545 4.84672 4.87573 4.93418 4.94133 5.02479 5.10922 5.14033
5.22171 5.23115 5.28538 5.32061 5.38593 5.45529 5.47496 5.56991
5.63765 5.67140 5.69015 5.78711 5.81280 5.89498 5.97387 6.09932
6.12529 6.17006 6.36284 6.59516 6.79738 6.90034 7.01326 7.05090
7.14811 7.28796 7.36968 7.63950 7.83027 7.86162 8.06025 8.95544
9.58216 10.67965
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.020606 B = 0.002157 C = 0.002030
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1358.472000 B =12978.819228 C =13789.522503
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.509 3.491
3 O -0.543 6.543
4 N -0.613 5.613
5 C 0.106 3.894
6 C -0.122 4.122
7 C -0.099 4.099
8 H 0.089 0.911
9 C -0.134 4.134
10 C 0.045 3.955
11 N -0.509 5.509
12 C 0.107 3.893
13 C -0.168 4.168
14 C -0.050 4.050
15 C -0.221 4.221
16 C 0.161 3.839
17 O -0.218 6.218
18 C -0.388 4.388
19 H 0.107 0.893
20 C 0.062 3.938
21 N -0.880 5.880
22 Si 0.906 3.094
23 H -0.274 1.274
24 H -0.282 1.282
25 H -0.260 1.260
26 C -0.193 4.193
27 C -0.070 4.070
28 C 0.058 3.942
29 H 0.046 0.954
30 C 0.127 3.873
31 H 0.087 0.913
32 H 0.091 0.909
33 H 0.087 0.913
34 H 0.069 0.931
35 H 0.086 0.914
36 H 0.081 0.919
37 H 0.069 0.931
38 H 0.075 0.925
39 H 0.066 0.934
40 H 0.081 0.919
41 H 0.060 0.940
42 H 0.035 0.965
43 H 0.074 0.926
44 H 0.110 0.890
45 H 0.132 0.868
46 H 0.279 0.721
47 H 0.115 0.885
48 H 0.107 0.893
49 H 0.077 0.923
50 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.665 -6.918 2.650 30.576
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C 0.298 3.702
3 O -0.420 6.420
4 N -0.348 5.348
5 C -0.017 4.017
6 C -0.161 4.161
7 C -0.118 4.118
8 H 0.108 0.892
9 C -0.172 4.172
10 C -0.082 4.082
11 N -0.233 5.233
12 C -0.020 4.020
13 C -0.170 4.170
14 C -0.069 4.069
15 C -0.240 4.240
16 C 0.109 3.891
17 O -0.123 6.123
18 C -0.464 4.464
19 H 0.124 0.876
20 C -0.141 4.141
21 N -0.518 5.518
22 Si 0.731 3.269
23 H -0.199 1.199
24 H -0.208 1.208
25 H -0.184 1.184
26 C -0.213 4.213
27 C -0.089 4.089
28 C -0.052 4.052
29 H 0.064 0.936
30 C 0.005 3.995
31 H 0.106 0.894
32 H 0.110 0.890
33 H 0.106 0.894
34 H 0.087 0.913
35 H 0.104 0.896
36 H 0.100 0.900
37 H 0.087 0.913
38 H 0.094 0.906
39 H 0.084 0.916
40 H 0.099 0.901
41 H 0.078 0.922
42 H 0.053 0.947
43 H 0.092 0.908
44 H 0.128 0.872
45 H 0.150 0.850
46 H 0.089 0.911
47 H 0.133 0.867
48 H 0.125 0.875
49 H 0.095 0.905
50 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -28.700 -6.370 2.193 29.480
hybrid contribution 0.193 -0.517 1.061 1.196
sum -28.507 -6.887 3.254 29.508
Atomic orbital electron populations
1.21956 0.91875 1.05469 1.03995 1.20850 0.90639 0.83140 0.75617
1.90739 1.70708 1.31037 1.49551 1.48252 1.06852 1.05996 1.73654
1.21765 0.95968 0.84293 0.99641 1.21830 0.95414 0.99602 0.99238
1.22109 0.93964 0.95143 1.00573 0.89241 1.22643 0.95987 0.99845
0.98733 1.23221 0.96032 0.89264 0.99657 1.63296 1.10157 1.02275
1.47551 1.20999 0.91916 0.95338 0.93703 1.19093 0.93359 1.03675
1.00843 1.20618 0.93062 0.97236 0.95994 1.21278 0.94740 1.04314
1.03693 1.19127 0.83642 0.92910 0.93435 1.83565 1.14576 1.66194
1.48009 1.20774 0.92135 1.26442 1.07058 0.87597 1.24471 0.95616
0.97253 0.96719 1.69650 1.10425 1.41849 1.29843 0.86180 0.78462
0.80368 0.81872 1.19910 1.20811 1.18412 1.20143 0.93191 1.05149
1.02794 1.20464 0.93244 0.97287 0.97865 1.22260 0.89251 0.95811
0.97840 0.93642 1.21186 0.78005 1.01558 0.98766 0.89438 0.89007
0.89389 0.91250 0.89611 0.90031 0.91265 0.90635 0.91567 0.90082
0.92153 0.94713 0.90760 0.87234 0.84998 0.91078 0.86704 0.87455
0.90519 0.88719
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.92 8.65 36.01 0.31 -0.61 16
2 C 0.51 5.10 7.78 -10.99 -0.09 5.01 16
3 O -0.54 -8.08 16.45 5.56 0.09 -7.99 16
4 N -0.61 -5.30 3.02 -172.97 -0.52 -5.82 16
5 C 0.11 0.54 6.22 -3.53 -0.02 0.52 16
6 C -0.12 -0.64 5.74 -26.79 -0.15 -0.80 16
7 C -0.10 -0.76 2.57 -89.53 -0.23 -0.99 16
8 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16
9 C -0.13 -1.07 6.53 -25.17 -0.16 -1.23 16
10 C 0.05 0.50 6.22 -1.68 -0.01 0.49 16
11 N -0.51 -6.24 5.11 -225.36 -1.15 -7.40 16
12 C 0.11 1.45 4.74 -4.98 -0.02 1.43 16
13 C -0.17 -2.79 5.12 -104.58 -0.54 -3.32 16
14 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16
15 C -0.22 -4.84 9.17 -39.40 -0.36 -5.20 16
16 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16
17 O -0.22 -5.82 8.59 0.06 0.00 -5.82 16
18 C -0.39 -11.06 9.95 30.89 0.31 -10.75 16
19 H 0.11 3.09 5.44 -52.49 -0.29 2.80 16
20 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16
21 N -0.88 -25.65 13.96 55.48 0.77 -24.88 16
22 Si 0.91 21.85 28.62 -169.99 -4.86 16.98 16
23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
25 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16
26 C -0.19 -3.83 9.99 -39.40 -0.39 -4.22 16
27 C -0.07 -1.17 8.76 -39.61 -0.35 -1.52 16
28 C 0.06 0.59 1.90 -67.78 -0.13 0.46 16
29 H 0.05 0.50 7.68 -51.93 -0.40 0.10 16
30 C 0.13 1.36 6.33 -4.14 -0.03 1.33 16
31 H 0.09 0.29 7.55 -51.93 -0.39 -0.10 16
32 H 0.09 0.52 8.12 -51.92 -0.42 0.10 16
33 H 0.09 0.29 7.99 -51.93 -0.42 -0.12 16
34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
35 H 0.09 0.25 5.84 -51.93 -0.30 -0.06 16
36 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16
37 H 0.07 0.40 8.03 -51.93 -0.42 -0.02 16
38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
39 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16
40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
41 H 0.06 0.68 5.66 -51.93 -0.29 0.38 16
42 H 0.03 0.44 7.89 -51.93 -0.41 0.03 16
43 H 0.07 1.01 8.03 -51.92 -0.42 0.59 16
44 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16
45 H 0.13 3.06 5.64 -52.48 -0.30 2.76 16
46 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16
47 H 0.11 2.12 8.06 -52.48 -0.42 1.70 16
48 H 0.11 1.49 6.92 -52.48 -0.36 1.12 16
49 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
50 H 0.09 1.24 7.01 -51.93 -0.36 0.87 16
LS Contribution 391.81 15.07 5.90 5.90
Total: -1.00 -32.62 391.81 -10.09 -42.71
By element:
Atomic # 1 Polarization: 9.58 SS G_CDS: -7.72 Total: 1.87 kcal
Atomic # 6 Polarization: -12.95 SS G_CDS: -2.60 Total: -15.55 kcal
Atomic # 7 Polarization: -37.20 SS G_CDS: -0.90 Total: -38.10 kcal
Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.81 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -4.86 Total: 16.98 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -32.62 -10.09 -42.71 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001041860237.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.826 kcal
(2) G-P(sol) polarization free energy of solvation -32.617 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.791 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.879 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds