Wall clock time and date at job start Wed Apr 1 2020 02:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47015 * 2 1 4 4 C 1.35709 * 117.00368 * 180.02562 * 3 2 1 5 5 C 1.38997 * 119.90911 * 359.72846 * 4 3 2 6 6 C 1.37707 * 120.08981 * 179.72787 * 5 4 3 7 7 C 1.39731 * 119.90398 * 0.52222 * 6 5 4 8 8 C 1.47599 * 120.08227 * 179.77242 * 7 6 5 9 9 O 1.21586 * 120.00081 * 309.46556 * 8 7 6 10 10 N 1.34777 * 120.00140 * 129.46664 * 8 7 6 11 11 C 1.47160 * 121.21542 * 3.21382 * 10 8 7 12 12 C 1.52343 * 108.24303 * 237.25473 * 11 10 8 13 13 C 1.53096 * 110.64811 * 302.87938 * 12 11 10 14 14 H 1.08997 * 113.06659 * 288.85809 * 13 12 11 15 15 C 1.56033 * 106.38491 * 164.43637 * 13 12 11 16 16 C 1.54501 * 102.61218 * 281.63151 * 15 13 12 17 17 N 1.46655 * 107.02638 * 337.73435 * 16 15 13 18 18 C 1.36935 * 125.63635 * 177.92353 * 17 16 15 19 19 H 1.08004 * 119.99914 * 179.41171 * 18 17 16 20 20 C 1.38811 * 120.00295 * 359.41877 * 18 17 16 21 21 N 1.31627 * 119.99839 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00280 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46882 * 59.99844 * 22 20 18 24 24 H 1.48498 * 109.47173 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47309 * 299.99977 * 22 20 18 26 26 C 1.46459 * 108.30018 * 357.42712 * 17 16 15 27 27 H 1.09003 * 108.42575 * 271.25621 * 26 17 16 28 28 C 1.46759 * 121.22298 * 183.49026 * 10 8 7 29 29 C 1.39735 * 119.82935 * 359.74823 * 7 6 5 30 30 C 1.37697 * 119.90725 * 0.02562 * 29 7 6 31 31 H 1.09005 * 109.47220 * 299.99616 * 1 2 3 32 32 H 1.09003 * 109.46856 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47706 * 59.99548 * 1 2 3 34 34 H 1.08994 * 109.47706 * 120.00452 * 2 1 3 35 35 H 1.09005 * 109.47220 * 240.00384 * 2 1 3 36 36 H 1.08003 * 119.95258 * 359.97438 * 5 4 3 37 37 H 1.07994 * 120.04438 * 180.24767 * 6 5 4 38 38 H 1.08995 * 109.76009 * 356.90211 * 11 10 8 39 39 H 1.09001 * 109.76073 * 117.66316 * 11 10 8 40 40 H 1.09002 * 109.32158 * 182.50871 * 12 11 10 41 41 H 1.09003 * 109.08670 * 63.09592 * 12 11 10 42 42 H 1.09005 * 110.78195 * 39.91215 * 15 13 12 43 43 H 1.08996 * 110.78268 * 163.15985 * 15 13 12 44 44 H 1.09007 * 109.90429 * 96.52680 * 16 15 13 45 45 H 1.08998 * 109.90254 * 217.58303 * 16 15 13 46 46 H 0.96998 * 119.99675 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.22850 * 247.79258 * 28 10 8 48 48 H 1.09003 * 109.22134 * 7.15153 * 28 10 8 49 49 H 1.07999 * 120.04603 * 179.97438 * 29 7 6 50 50 H 1.08002 * 119.95216 * 180.02562 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5252 -0.0005 5 6 4.1967 0.4217 0.0046 6 6 5.5625 0.5979 -0.0015 7 6 6.0984 1.8883 -0.0020 8 6 7.5617 2.0817 -0.0036 9 8 8.2529 1.4978 0.8085 10 7 8.1316 2.9056 -0.9052 11 6 7.3153 3.6792 -1.8543 12 6 7.7615 3.3239 -3.2670 13 6 9.2569 3.5986 -3.4460 14 1 9.4955 4.6617 -3.4733 15 6 9.6904 2.8466 -4.7426 16 6 9.8157 1.3846 -4.2587 17 7 10.0149 1.4285 -2.8064 18 6 10.1314 0.3400 -1.9838 19 1 10.2861 0.4782 -0.9239 20 6 10.0509 -0.9411 -2.5122 21 7 9.8620 -1.1096 -3.8039 22 14 10.2106 -2.4261 -1.3902 23 1 9.1345 -2.3915 -0.3673 24 1 10.0893 -3.6690 -2.1937 25 1 11.5340 -2.3981 -0.7174 26 6 10.0791 2.8321 -2.3933 27 1 11.1156 3.1633 -2.4579 28 6 9.5891 3.0596 -0.9803 29 6 5.2455 2.9952 -0.0015 30 6 3.8809 2.8104 0.0000 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5139 0.8899 35 1 1.8934 -0.5138 -0.8901 36 1 3.7816 -0.5754 0.0095 37 1 6.2183 -0.2601 -0.0015 38 1 6.2630 3.4253 -1.7275 39 1 7.4612 4.7455 -1.6820 40 1 7.1979 3.9209 -3.9840 41 1 7.5661 2.2668 -3.4472 42 1 8.9258 2.9343 -5.5145 43 1 10.6480 3.2205 -5.1047 44 1 8.8989 0.8395 -4.4834 45 1 10.6627 0.9033 -4.7477 46 1 9.8053 -2.0048 -4.1731 47 1 9.8605 4.0667 -0.6639 48 1 10.0612 2.3358 -0.3158 49 1 5.6559 3.9941 -0.0015 50 1 3.2210 3.6654 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042335423.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:05 Heat of formation + Delta-G solvation = -9.494618 kcal Electronic energy + Delta-G solvation = -31677.379298 eV Core-core repulsion = 27670.858190 eV Total energy + Delta-G solvation = -4006.521108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.53063 -39.73373 -38.27381 -36.94970 -34.98002 -32.79758 -32.25089 -31.37821 -30.93057 -30.07293 -28.67477 -28.33702 -24.84119 -24.35389 -24.11783 -22.66263 -22.50929 -21.72389 -20.00365 -19.83563 -18.52394 -18.19573 -17.07438 -16.53261 -16.31718 -16.03968 -15.51233 -14.95725 -14.70720 -14.60656 -14.14657 -14.01817 -13.90244 -13.64505 -13.54038 -13.49731 -13.00442 -12.85990 -12.77214 -12.50194 -12.27949 -12.09818 -11.96337 -11.86211 -11.53300 -11.37354 -11.20365 -10.89409 -10.85562 -10.81997 -10.74501 -10.64831 -10.10653 -9.82635 -9.80431 -9.61998 -9.49233 -9.31099 -8.99773 -8.49029 -8.23773 -8.02609 -6.73747 -5.61324 -2.93530 1.14674 1.34474 2.99164 3.12988 3.44327 3.49207 3.51669 3.56945 3.89703 4.59701 4.63799 4.65113 4.76808 4.79730 4.92487 4.97325 5.14208 5.16492 5.18732 5.27853 5.37424 5.44645 5.49083 5.54135 5.57845 5.60167 5.72561 5.74542 5.77766 5.86181 5.98868 6.00871 6.04797 6.16119 6.18989 6.29942 6.31838 6.34463 6.47640 6.48967 6.54668 6.62588 6.66232 6.79097 7.00049 7.13871 7.26971 7.66885 7.69137 7.92901 7.94967 8.34747 8.70433 9.33335 9.93492 10.57429 11.50154 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.003939 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.292373 B = 7106.433774 C = 8263.496145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.316 6.316 4 C 0.142 3.858 5 C -0.212 4.212 6 C -0.023 4.023 7 C -0.150 4.150 8 C 0.570 3.430 9 O -0.534 6.534 10 N -0.587 5.587 11 C 0.101 3.899 12 C -0.122 4.122 13 C -0.101 4.101 14 H 0.075 0.925 15 C -0.145 4.145 16 C 0.180 3.820 17 N -0.588 5.588 18 C -0.214 4.214 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.925 5.925 22 Si 0.904 3.096 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.286 1.286 26 C 0.154 3.846 27 H 0.027 0.973 28 C 0.115 3.885 29 C -0.055 4.055 30 C -0.160 4.160 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.038 0.962 46 H 0.249 0.751 47 H 0.055 0.945 48 H 0.095 0.905 49 H 0.135 0.865 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.287 9.820 3.591 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.230 6.230 4 C 0.096 3.904 5 C -0.231 4.231 6 C -0.042 4.042 7 C -0.153 4.153 8 C 0.358 3.642 9 O -0.411 6.411 10 N -0.319 5.319 11 C -0.022 4.022 12 C -0.160 4.160 13 C -0.121 4.121 14 H 0.093 0.907 15 C -0.183 4.183 16 C 0.056 3.944 17 N -0.313 5.313 18 C -0.342 4.342 19 H 0.098 0.902 20 C -0.203 4.203 21 N -0.574 5.574 22 Si 0.735 3.265 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.212 1.212 26 C 0.045 3.955 27 H 0.045 0.955 28 C -0.008 4.008 29 C -0.073 4.073 30 C -0.178 4.178 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.113 0.887 49 H 0.153 0.847 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.066 9.378 4.006 18.193 hybrid contribution 0.211 -1.194 0.296 1.248 sum -14.855 8.184 4.303 17.498 Atomic orbital electron populations 1.21772 0.92734 1.02875 1.03449 1.22825 0.95824 0.81921 1.01789 1.86001 1.19153 1.29479 1.88328 1.19149 0.82107 0.94154 0.94966 1.21179 0.93944 0.98207 1.09760 1.21028 0.94261 0.96613 0.92293 1.19873 0.93626 0.94215 1.07618 1.18000 0.86914 0.78393 0.80939 1.90770 1.63860 1.47463 1.39036 1.47700 1.07171 1.43406 1.33577 1.21836 0.95840 0.94818 0.89661 1.21730 0.95737 1.03429 0.95116 1.22375 0.94985 0.97718 0.97050 0.90709 1.23182 0.99593 0.99362 0.96157 1.21069 1.00483 0.89224 0.83674 1.44089 1.84970 0.98865 1.03384 1.19006 1.41422 0.83547 0.90275 0.90214 1.24692 1.02545 0.97147 0.95912 1.69966 1.56910 1.20494 1.10015 0.86298 0.78209 0.82418 0.79581 1.21128 1.21877 1.21248 1.20718 0.95911 0.87470 0.91385 0.95533 1.21388 0.79499 1.00596 0.99337 1.21070 0.92060 0.98285 0.95916 1.20257 0.94811 0.94746 1.08035 0.91580 0.90358 0.91494 0.91855 0.91719 0.85097 0.84712 0.89563 0.91848 0.92106 0.90084 0.92392 0.92845 0.93615 0.94377 0.94053 0.92651 0.88708 0.84725 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.05 0.45 5.45 37.16 0.20 0.65 16 3 O -0.32 -3.68 10.12 -18.83 -0.19 -3.87 16 4 C 0.14 1.83 6.70 -39.02 -0.26 1.56 16 5 C -0.21 -2.90 9.01 -39.49 -0.36 -3.25 16 6 C -0.02 -0.38 9.73 -39.22 -0.38 -0.76 16 7 C -0.15 -2.50 5.05 -104.96 -0.53 -3.03 16 8 C 0.57 11.27 7.24 -12.44 -0.09 11.18 16 9 O -0.53 -12.63 16.51 5.29 0.09 -12.55 16 10 N -0.59 -10.49 2.98 -175.59 -0.52 -11.02 16 11 C 0.10 1.44 5.45 -4.02 -0.02 1.42 16 12 C -0.12 -1.92 5.02 -27.02 -0.14 -2.05 16 13 C -0.10 -1.68 3.68 -88.43 -0.33 -2.00 16 14 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 15 C -0.14 -2.63 6.33 -24.32 -0.15 -2.78 16 16 C 0.18 4.31 4.59 -3.17 -0.01 4.30 16 17 N -0.59 -14.55 3.13 -165.04 -0.52 -15.07 16 18 C -0.21 -6.00 9.69 -15.06 -0.15 -6.14 16 19 H 0.08 2.30 6.53 -52.48 -0.34 1.95 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 21 N -0.93 -27.41 10.31 55.49 0.57 -26.84 16 22 Si 0.90 23.34 29.55 -169.99 -5.02 18.31 16 23 H -0.28 -7.41 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 C 0.15 3.06 3.00 -68.30 -0.21 2.86 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 C 0.11 2.16 5.66 -4.77 -0.03 2.13 16 29 C -0.05 -0.71 7.35 -39.22 -0.29 -1.00 16 30 C -0.16 -1.92 9.97 -39.50 -0.39 -2.32 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.51 7.64 -51.93 -0.40 0.12 16 35 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 36 H 0.13 1.50 6.28 -52.48 -0.33 1.18 16 37 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 38 H 0.09 1.14 4.49 -51.93 -0.23 0.90 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.61 6.84 -51.93 -0.35 1.25 16 42 H 0.06 0.96 7.97 -51.93 -0.41 0.54 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 1.22 6.95 -51.93 -0.36 0.86 16 45 H 0.04 1.02 7.59 -51.93 -0.39 0.63 16 46 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.09 2.09 5.59 -51.93 -0.29 1.80 16 49 H 0.13 1.45 7.07 -52.49 -0.37 1.08 16 50 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -33.50 385.94 -10.29 -43.80 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.67 Total: 1.58 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.84 Total: -0.17 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.47 Total: -52.92 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.10 Total: -16.41 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.50 -10.29 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042335423.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.301 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds