Wall clock time and date at job start Wed Apr 1 2020 02:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47015 * 2 1 4 4 C 1.35709 * 117.00368 * 180.02562 * 3 2 1 5 5 C 1.38997 * 119.90911 * 359.72846 * 4 3 2 6 6 C 1.37707 * 120.08981 * 179.72787 * 5 4 3 7 7 C 1.39731 * 119.90398 * 0.52222 * 6 5 4 8 8 C 1.47599 * 120.08227 * 179.77242 * 7 6 5 9 9 O 1.21586 * 120.00081 * 309.46556 * 8 7 6 10 10 N 1.34777 * 120.00140 * 129.46664 * 8 7 6 11 11 C 1.47160 * 121.21542 * 3.21382 * 10 8 7 12 12 C 1.52343 * 108.24303 * 237.25473 * 11 10 8 13 13 C 1.53096 * 110.64811 * 302.87938 * 12 11 10 14 14 H 1.08997 * 113.06659 * 288.85809 * 13 12 11 15 15 C 1.56033 * 106.38491 * 164.43637 * 13 12 11 16 16 C 1.54501 * 102.61218 * 281.63151 * 15 13 12 17 17 N 1.46655 * 107.02638 * 337.73435 * 16 15 13 18 18 C 1.36935 * 125.63635 * 177.92353 * 17 16 15 19 19 H 1.08004 * 119.99914 * 179.41171 * 18 17 16 20 20 C 1.38811 * 120.00295 * 359.41877 * 18 17 16 21 21 N 1.31627 * 119.99839 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00280 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46882 * 59.99844 * 22 20 18 24 24 H 1.48498 * 109.47173 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47309 * 299.99977 * 22 20 18 26 26 C 1.46459 * 108.30018 * 357.42712 * 17 16 15 27 27 H 1.09003 * 108.42575 * 271.25621 * 26 17 16 28 28 C 1.46759 * 121.22298 * 183.49026 * 10 8 7 29 29 C 1.39735 * 119.82935 * 359.74823 * 7 6 5 30 30 C 1.37697 * 119.90725 * 0.02562 * 29 7 6 31 31 H 1.09005 * 109.47220 * 299.99616 * 1 2 3 32 32 H 1.09003 * 109.46856 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47706 * 59.99548 * 1 2 3 34 34 H 1.08994 * 109.47706 * 120.00452 * 2 1 3 35 35 H 1.09005 * 109.47220 * 240.00384 * 2 1 3 36 36 H 1.08003 * 119.95258 * 359.97438 * 5 4 3 37 37 H 1.07994 * 120.04438 * 180.24767 * 6 5 4 38 38 H 1.08995 * 109.76009 * 356.90211 * 11 10 8 39 39 H 1.09001 * 109.76073 * 117.66316 * 11 10 8 40 40 H 1.09002 * 109.32158 * 182.50871 * 12 11 10 41 41 H 1.09003 * 109.08670 * 63.09592 * 12 11 10 42 42 H 1.09005 * 110.78195 * 39.91215 * 15 13 12 43 43 H 1.08996 * 110.78268 * 163.15985 * 15 13 12 44 44 H 1.09007 * 109.90429 * 96.52680 * 16 15 13 45 45 H 1.08998 * 109.90254 * 217.58303 * 16 15 13 46 46 H 0.96998 * 119.99675 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.22850 * 247.79258 * 28 10 8 48 48 H 1.09003 * 109.22134 * 7.15153 * 28 10 8 49 49 H 1.07999 * 120.04603 * 179.97438 * 29 7 6 50 50 H 1.08002 * 119.95216 * 180.02562 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5252 -0.0005 5 6 4.1967 0.4217 0.0046 6 6 5.5625 0.5979 -0.0015 7 6 6.0984 1.8883 -0.0020 8 6 7.5617 2.0817 -0.0036 9 8 8.2529 1.4978 0.8085 10 7 8.1316 2.9056 -0.9052 11 6 7.3153 3.6792 -1.8543 12 6 7.7615 3.3239 -3.2670 13 6 9.2569 3.5986 -3.4460 14 1 9.4955 4.6617 -3.4733 15 6 9.6904 2.8466 -4.7426 16 6 9.8157 1.3846 -4.2587 17 7 10.0149 1.4285 -2.8064 18 6 10.1314 0.3400 -1.9838 19 1 10.2861 0.4782 -0.9239 20 6 10.0509 -0.9411 -2.5122 21 7 9.8620 -1.1096 -3.8039 22 14 10.2106 -2.4261 -1.3902 23 1 9.1345 -2.3915 -0.3673 24 1 10.0893 -3.6690 -2.1937 25 1 11.5340 -2.3981 -0.7174 26 6 10.0791 2.8321 -2.3933 27 1 11.1156 3.1633 -2.4579 28 6 9.5891 3.0596 -0.9803 29 6 5.2455 2.9952 -0.0015 30 6 3.8809 2.8104 0.0000 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5139 0.8899 35 1 1.8934 -0.5138 -0.8901 36 1 3.7816 -0.5754 0.0095 37 1 6.2183 -0.2601 -0.0015 38 1 6.2630 3.4253 -1.7275 39 1 7.4612 4.7455 -1.6820 40 1 7.1979 3.9209 -3.9840 41 1 7.5661 2.2668 -3.4472 42 1 8.9258 2.9343 -5.5145 43 1 10.6480 3.2205 -5.1047 44 1 8.8989 0.8395 -4.4834 45 1 10.6627 0.9033 -4.7477 46 1 9.8053 -2.0048 -4.1731 47 1 9.8605 4.0667 -0.6639 48 1 10.0612 2.3358 -0.3158 49 1 5.6559 3.9941 -0.0015 50 1 3.2210 3.6654 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042335423.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:04 Heat of formation + Delta-G solvation = -30.337917 kcal Electronic energy + Delta-G solvation = -31678.283132 eV Core-core repulsion = 27670.858190 eV Total energy + Delta-G solvation = -4007.424941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76888 -40.93240 -39.71675 -38.12707 -36.57791 -34.66765 -33.10181 -32.83982 -32.16444 -31.31876 -30.11687 -30.00033 -26.55065 -25.92864 -25.09885 -23.94397 -23.82028 -22.67342 -21.72759 -21.28203 -19.88243 -19.28230 -18.48083 -18.36672 -17.31243 -17.10774 -16.89265 -16.70796 -16.21647 -15.93852 -15.78160 -15.45416 -15.31487 -14.86661 -14.62998 -14.44265 -14.30745 -14.18384 -14.05935 -13.75786 -13.60098 -13.31213 -13.22640 -13.11764 -12.98813 -12.85191 -12.65526 -12.64546 -12.50234 -12.31094 -12.08346 -11.82186 -11.68946 -11.67748 -11.39835 -11.27626 -11.14367 -10.78088 -10.67290 -10.06959 -9.55207 -9.22019 -8.80982 -7.84537 -5.14747 0.02245 0.26143 1.32951 1.35445 1.43010 1.69455 2.13528 2.18621 2.45710 2.71250 3.33034 3.48411 3.67141 3.69441 3.80742 3.90203 3.95062 4.03527 4.11049 4.13151 4.18515 4.31142 4.34244 4.36620 4.47776 4.50070 4.52150 4.63107 4.68579 4.74196 4.84008 4.88845 4.90604 4.92104 4.94422 5.03642 5.08024 5.15834 5.16917 5.17889 5.27800 5.31411 5.38405 5.52351 5.58045 5.66973 5.72698 5.74251 5.83277 6.23678 6.32591 6.54171 7.15482 7.24705 7.84321 8.45566 9.24931 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.003939 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.292373 B = 7106.433774 C = 8263.496145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.040 3.960 3 O -0.317 6.317 4 C 0.146 3.854 5 C -0.213 4.213 6 C -0.052 4.052 7 C -0.174 4.174 8 C 0.558 3.442 9 O -0.592 6.592 10 N -0.586 5.586 11 C 0.098 3.902 12 C -0.119 4.119 13 C -0.083 4.083 14 H 0.126 0.874 15 C -0.131 4.131 16 C 0.188 3.812 17 N -0.604 5.604 18 C -0.206 4.206 19 H 0.064 0.936 20 C -0.061 4.061 21 N -0.947 5.947 22 Si 0.951 3.049 23 H -0.294 1.294 24 H -0.287 1.287 25 H -0.281 1.281 26 C 0.140 3.860 27 H 0.030 0.970 28 C 0.117 3.883 29 C -0.040 4.040 30 C -0.149 4.149 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.145 0.855 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.028 0.972 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.006 0.994 45 H -0.005 1.005 46 H 0.242 0.758 47 H 0.099 0.901 48 H 0.050 0.950 49 H 0.167 0.833 50 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.864 13.895 3.230 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 O -0.231 6.231 4 C 0.100 3.900 5 C -0.231 4.231 6 C -0.071 4.071 7 C -0.177 4.177 8 C 0.348 3.652 9 O -0.474 6.474 10 N -0.317 5.317 11 C -0.023 4.023 12 C -0.157 4.157 13 C -0.102 4.102 14 H 0.144 0.856 15 C -0.169 4.169 16 C 0.063 3.937 17 N -0.329 5.329 18 C -0.336 4.336 19 H 0.081 0.919 20 C -0.254 4.254 21 N -0.598 5.598 22 Si 0.782 3.218 23 H -0.221 1.221 24 H -0.213 1.213 25 H -0.208 1.208 26 C 0.034 3.966 27 H 0.047 0.953 28 C -0.006 4.006 29 C -0.058 4.058 30 C -0.167 4.167 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.047 0.953 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.024 0.976 45 H 0.014 0.986 46 H 0.052 0.948 47 H 0.117 0.883 48 H 0.068 0.932 49 H 0.184 0.816 50 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.657 13.505 3.623 22.523 hybrid contribution 0.954 -2.449 0.430 2.663 sum -16.703 11.056 4.053 20.437 Atomic orbital electron populations 1.21793 0.90829 1.04171 1.03567 1.23123 0.97356 0.80777 1.02188 1.86021 1.18054 1.31174 1.87831 1.19321 0.82659 0.94251 0.93814 1.21244 0.92713 0.99700 1.09463 1.20876 0.95264 0.95936 0.95006 1.19763 0.92220 0.95403 1.10334 1.18625 0.88247 0.77749 0.80585 1.90721 1.65451 1.49696 1.41547 1.47872 1.07146 1.43082 1.33551 1.22192 0.95836 0.96707 0.87532 1.21708 0.95766 1.00983 0.97264 1.22439 0.94700 0.99513 0.93565 0.85576 1.23044 1.01358 0.94873 0.97610 1.20808 0.96676 0.92982 0.83253 1.44278 1.84527 1.00434 1.03670 1.19041 1.39502 0.85018 0.90017 0.91863 1.25278 1.03867 0.99237 0.97026 1.70154 1.58586 1.20101 1.10930 0.85542 0.77829 0.80387 0.78052 1.22125 1.21301 1.20756 1.21063 0.97018 0.85158 0.93395 0.95251 1.21298 0.80184 1.01588 0.97561 1.21299 0.91978 0.98222 0.94348 1.20652 0.94730 0.95408 1.05919 0.91344 0.88519 0.91447 0.91310 0.91558 0.83722 0.88383 0.88407 0.86977 0.87939 0.95300 0.90175 0.91320 0.97590 0.98633 0.94843 0.88276 0.93191 0.81605 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 71.98 0.74 -0.84 16 2 C 0.04 0.63 5.45 71.98 0.39 1.02 16 3 O -0.32 -6.57 10.12 -90.30 -0.91 -7.48 16 4 C 0.15 3.45 6.70 22.63 0.15 3.60 16 5 C -0.21 -5.84 9.01 22.33 0.20 -5.64 16 6 C -0.05 -1.82 9.73 22.51 0.22 -1.60 16 7 C -0.17 -5.85 5.05 -20.08 -0.10 -5.95 16 8 C 0.56 22.81 7.24 86.71 0.63 23.44 16 9 O -0.59 -30.08 16.51 -3.99 -0.07 -30.15 16 10 N -0.59 -20.40 2.98 -827.70 -2.46 -22.87 16 11 C 0.10 2.39 5.45 86.04 0.47 2.86 16 12 C -0.12 -3.32 5.02 30.41 0.15 -3.16 16 13 C -0.08 -2.41 3.68 -9.37 -0.03 -2.45 16 14 H 0.13 2.57 8.14 -2.39 -0.02 2.56 16 15 C -0.13 -4.46 6.33 32.16 0.20 -4.26 16 16 C 0.19 9.32 4.59 86.86 0.40 9.72 16 17 N -0.60 -31.02 3.13 -676.07 -2.12 -33.14 16 18 C -0.21 -12.23 9.69 84.03 0.81 -11.42 16 19 H 0.06 3.92 6.53 -2.91 -0.02 3.90 16 20 C -0.06 -3.75 5.49 84.86 0.47 -3.29 16 21 N -0.95 -59.53 10.31 21.65 0.22 -59.31 16 22 Si 0.95 50.90 29.55 68.60 2.03 52.92 16 23 H -0.29 -16.01 7.11 99.48 0.71 -15.30 16 24 H -0.29 -14.97 7.11 99.48 0.71 -14.27 16 25 H -0.28 -14.66 7.11 99.48 0.71 -13.95 16 26 C 0.14 5.46 3.00 44.77 0.13 5.59 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 C 0.12 4.32 5.66 85.76 0.49 4.81 16 29 C -0.04 -0.93 7.35 22.50 0.17 -0.77 16 30 C -0.15 -3.04 9.97 22.32 0.22 -2.82 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 1.01 7.64 -2.39 -0.02 0.99 16 35 H 0.07 1.03 7.66 -2.38 -0.02 1.01 16 36 H 0.15 3.38 6.28 -2.91 -0.02 3.36 16 37 H 0.10 4.05 8.06 -2.91 -0.02 4.02 16 38 H 0.10 2.19 4.49 -2.39 -0.01 2.18 16 39 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.03 1.12 6.84 -2.39 -0.02 1.10 16 42 H 0.08 2.41 7.97 -2.38 -0.02 2.39 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.01 0.33 6.95 -2.38 -0.02 0.32 16 45 H 0.00 -0.26 7.59 -2.39 -0.02 -0.28 16 46 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 48 H 0.05 2.30 5.59 -2.39 -0.01 2.29 16 49 H 0.17 2.75 7.07 -2.91 -0.02 2.73 16 50 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -83.03 385.94 3.34 -79.69 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.94 Total: 11.47 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 5.71 Total: 8.85 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -4.36 Total: -115.31 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.98 Total: -37.63 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.03 Total: 52.92 kcal Total: -83.03 3.34 -79.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042335423.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.355 kcal (2) G-P(sol) polarization free energy of solvation -83.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds