Wall clock time and date at job start Wed Apr 1 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21275 * 120.00555 * 2 1 4 4 N 1.34783 * 119.99690 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00081 * 180.02562 * 4 2 1 6 6 H 1.09008 * 109.32003 * 325.36021 * 5 4 2 7 7 C 1.53025 * 109.32402 * 84.99655 * 5 4 2 8 8 C 1.53963 * 108.84003 * 175.70875 * 7 5 4 9 9 H 1.09000 * 112.97098 * 168.20978 * 8 7 5 10 10 C 1.55410 * 107.21446 * 293.54614 * 8 7 5 11 11 C 1.55173 * 100.42245 * 73.57361 * 10 8 7 12 12 H 1.09002 * 113.06343 * 163.03218 * 11 10 8 13 13 C 1.52985 * 109.32641 * 205.89086 * 5 4 2 14 14 N 1.48209 * 104.22117 * 40.59593 * 11 10 8 15 15 C 1.46894 * 110.99951 * 211.58903 * 14 11 10 16 16 C 1.50701 * 109.47438 * 275.55376 * 15 14 11 17 17 C 1.38299 * 119.92999 * 95.61848 * 16 15 14 18 18 C 1.38102 * 120.06929 * 180.02562 * 17 16 15 19 19 C 1.38878 * 119.92914 * 0.02562 * 18 17 16 20 20 O 1.35749 * 120.07217 * 179.97438 * 19 18 17 21 21 C 1.34830 * 116.99719 * 5.58439 * 20 19 18 22 22 H 1.08003 * 120.00250 * 354.95066 * 21 20 19 23 23 C 1.38663 * 120.00047 * 174.94428 * 21 20 19 24 24 N 1.31552 * 119.99899 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99735 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47199 * 269.99845 * 25 23 21 27 27 H 1.48499 * 109.46808 * 150.00385 * 25 23 21 28 28 H 1.48499 * 109.47526 * 30.00142 * 25 23 21 29 29 C 1.38883 * 119.86486 * 0.25025 * 19 18 17 30 30 C 1.38103 * 119.92589 * 359.49602 * 29 19 18 31 31 C 1.47501 * 108.15291 * 333.58309 * 14 11 10 32 32 H 1.09001 * 109.47553 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47304 * 300.00616 * 1 2 3 34 34 H 1.09001 * 109.47286 * 59.99884 * 1 2 3 35 35 H 0.96998 * 120.00137 * 0.02562 * 4 2 1 36 36 H 1.09003 * 109.57392 * 55.90624 * 7 5 4 37 37 H 1.08991 * 109.68812 * 295.57967 * 7 5 4 38 38 H 1.08999 * 111.22975 * 191.36570 * 10 8 7 39 39 H 1.09003 * 111.22210 * 315.78536 * 10 8 7 40 40 H 1.08993 * 109.53581 * 304.47558 * 13 5 4 41 41 H 1.09002 * 109.53070 * 64.70822 * 13 5 4 42 42 H 1.08999 * 109.47221 * 155.55527 * 15 14 11 43 43 H 1.09007 * 109.47585 * 35.55292 * 15 14 11 44 44 H 1.07994 * 119.96963 * 0.02562 * 17 16 15 45 45 H 1.08003 * 120.03762 * 179.97438 * 18 17 16 46 46 H 0.96995 * 120.00139 * 359.97438 * 24 23 21 47 47 H 1.07999 * 120.03751 * 179.72216 * 29 19 18 48 48 H 1.08001 * 119.96386 * 180.22917 * 30 29 19 49 49 H 1.09002 * 109.97942 * 120.37466 * 31 14 11 50 50 H 1.08997 * 109.98264 * 241.63450 * 31 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1674 0.0011 6 1 4.0067 -0.3212 -0.5837 7 6 4.1516 -1.0412 1.4398 8 6 5.6873 -1.1509 1.4383 9 1 6.1349 -0.8685 2.3912 10 6 6.0446 -2.5987 1.0008 11 6 5.7186 -2.5226 -0.5144 12 1 6.1649 -3.3345 -1.0886 13 6 4.1523 -2.4663 -0.6288 14 7 6.2228 -1.1919 -0.9289 15 6 5.4085 -0.6362 -2.0179 16 6 5.8985 -1.1753 -3.3371 17 6 5.2859 -2.2792 -3.9019 18 6 5.7330 -2.7759 -5.1104 19 6 6.7992 -2.1660 -5.7584 20 8 7.2414 -2.6522 -6.9463 21 6 6.5310 -3.6558 -7.4994 22 1 5.7024 -4.0916 -6.9609 23 6 6.8642 -4.1284 -8.7597 24 7 7.8737 -3.5979 -9.4155 25 14 5.8795 -5.5184 -9.5263 26 1 6.4858 -6.8208 -9.1500 27 1 5.8904 -5.3761 -11.0044 28 1 4.4795 -5.4635 -9.0340 29 6 7.4160 -1.0612 -5.1860 30 6 6.9609 -0.5660 -3.9797 31 6 6.2043 -0.3058 0.2501 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.6958 -2.0073 0.0005 36 1 3.7289 -1.8416 2.0471 37 1 3.8549 -0.0760 1.8500 38 1 7.1005 -2.8121 1.1669 39 1 5.4124 -3.3303 1.5040 40 1 3.7239 -3.3184 -0.1012 41 1 3.8591 -2.5010 -1.6781 42 1 5.4920 0.4505 -2.0160 43 1 4.3661 -0.9208 -1.8739 44 1 4.4571 -2.7533 -3.3973 45 1 5.2545 -3.6382 -5.5508 46 1 8.3847 -2.8759 -9.0176 47 1 8.2483 -0.5875 -5.6853 48 1 7.4376 0.2954 -3.5358 49 1 7.2109 0.0557 0.4602 50 1 5.5357 0.5365 0.0725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046998728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:18 Heat of formation + Delta-G solvation = -11.024019 kcal Electronic energy + Delta-G solvation = -30877.496672 eV Core-core repulsion = 26870.909244 eV Total energy + Delta-G solvation = -4006.587428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.69210 -39.48101 -38.95686 -36.72467 -35.16728 -33.46880 -32.16768 -31.58536 -30.78789 -30.13150 -29.37372 -28.51220 -25.49089 -24.96570 -24.14688 -22.63333 -21.86173 -21.11689 -20.83901 -19.83586 -19.61343 -18.31595 -17.32202 -17.10030 -16.75968 -15.91886 -15.43754 -15.33900 -15.05212 -14.87937 -14.17134 -13.98841 -13.95441 -13.72740 -13.64979 -13.49837 -13.41212 -13.06442 -12.93986 -12.78352 -12.73025 -12.49727 -12.39267 -12.06118 -12.00811 -11.53660 -11.41984 -11.13512 -11.03964 -10.83918 -10.71157 -10.66996 -10.55007 -10.43052 -10.31282 -10.16895 -10.07513 -9.36285 -9.32954 -8.74011 -8.20219 -8.13880 -7.19194 -6.74559 -4.03563 2.21042 2.29137 2.35956 2.87252 3.23544 3.29900 3.43392 3.95559 4.13041 4.22386 4.34492 4.44951 4.61930 4.66148 4.75506 4.80048 4.84477 4.89537 5.02357 5.05973 5.11965 5.16356 5.18839 5.22277 5.23511 5.42365 5.44021 5.47747 5.52175 5.65677 5.67069 5.73222 5.79500 5.82670 5.87710 5.93335 5.95452 6.03221 6.09744 6.19733 6.20637 6.41643 6.68701 6.86694 6.95736 7.08892 7.17544 7.19169 7.30469 7.40727 7.59647 7.78587 7.93353 8.43181 8.95188 9.65206 10.69714 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.002621 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.017115 B =10679.136721 C =11445.716724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.509 3.491 3 O -0.546 6.546 4 N -0.726 5.726 5 C 0.120 3.880 6 H 0.110 0.890 7 C -0.123 4.123 8 C -0.108 4.108 9 H 0.093 0.907 10 C -0.122 4.122 11 C 0.083 3.917 12 H 0.108 0.892 13 C -0.163 4.163 14 N -0.515 5.515 15 C 0.079 3.921 16 C -0.166 4.166 17 C -0.067 4.067 18 C -0.230 4.230 19 C 0.157 3.843 20 O -0.205 6.205 21 C -0.471 4.471 22 H 0.083 0.917 23 C 0.009 3.991 24 N -0.884 5.884 25 Si 1.098 2.902 26 H -0.281 1.281 27 H -0.276 1.276 28 H -0.283 1.283 29 C -0.196 4.196 30 C -0.053 4.053 31 C 0.039 3.961 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.399 0.601 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.102 0.898 45 H 0.126 0.874 46 H 0.282 0.718 47 H 0.113 0.887 48 H 0.110 0.890 49 H 0.075 0.925 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.079 2.290 23.453 26.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.423 6.423 4 N -0.378 5.378 5 C 0.016 3.984 6 H 0.128 0.872 7 C -0.162 4.162 8 C -0.128 4.128 9 H 0.111 0.889 10 C -0.160 4.160 11 C -0.025 4.025 12 H 0.126 0.874 13 C -0.202 4.202 14 N -0.239 5.239 15 C -0.047 4.047 16 C -0.167 4.167 17 C -0.086 4.086 18 C -0.249 4.249 19 C 0.104 3.896 20 O -0.109 6.109 21 C -0.547 4.547 22 H 0.100 0.900 23 C -0.196 4.196 24 N -0.516 5.516 25 Si 0.923 3.077 26 H -0.207 1.207 27 H -0.201 1.201 28 H -0.209 1.209 29 C -0.215 4.215 30 C -0.072 4.072 31 C -0.089 4.089 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.233 0.767 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.120 0.880 45 H 0.143 0.857 46 H 0.092 0.908 47 H 0.132 0.868 48 H 0.128 0.872 49 H 0.094 0.906 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.068 2.130 21.694 24.447 hybrid contribution -1.093 0.515 1.761 2.136 sum -12.162 2.645 23.454 26.552 Atomic orbital electron populations 1.21858 0.91733 1.04173 1.05353 1.20841 0.90623 0.83569 0.75332 1.90732 1.70712 1.31366 1.49513 1.46252 1.07287 1.08713 1.75551 1.21738 0.79393 1.00170 0.97120 0.87213 1.22169 0.95346 1.02251 0.96385 1.22736 0.94812 0.96101 0.99138 0.88923 1.22941 1.02002 0.96022 0.95013 1.23609 0.90382 0.93354 0.95185 0.87401 1.23206 0.98489 0.96630 1.01851 1.63775 1.52000 1.01776 1.06332 1.21591 0.95936 0.98268 0.88932 1.19095 1.00850 0.99966 0.96814 1.20574 0.98134 0.95153 0.94742 1.21110 1.01697 1.04280 0.97832 1.19230 0.91902 0.91747 0.86680 1.83668 1.49484 1.47980 1.29778 1.22214 1.15922 1.13103 1.03487 0.89966 1.26513 0.98712 1.02502 0.91896 1.70533 1.17069 1.24291 1.39678 0.83059 0.74409 0.73674 0.76579 1.20734 1.20070 1.20891 1.20201 1.04301 0.98653 0.98340 1.20447 0.94989 0.98344 0.93437 1.23079 1.01158 0.95405 0.89246 0.90635 0.88827 0.88619 0.76709 0.91777 0.91438 0.90452 0.90782 0.91065 0.90053 0.91293 0.91553 0.88034 0.85678 0.90767 0.86844 0.87165 0.90626 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.39 36.00 0.37 -0.62 16 2 C 0.51 5.08 7.90 -10.98 -0.09 4.99 16 3 O -0.55 -7.97 16.75 5.56 0.09 -7.87 16 4 N -0.73 -6.01 5.06 -53.80 -0.27 -6.28 16 5 C 0.12 1.17 1.57 -67.92 -0.11 1.06 16 6 H 0.11 1.37 3.03 -51.92 -0.16 1.22 16 7 C -0.12 -1.10 5.07 -26.22 -0.13 -1.23 16 8 C -0.11 -0.95 4.26 -87.94 -0.38 -1.32 16 9 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 10 C -0.12 -1.06 6.19 -24.30 -0.15 -1.21 16 11 C 0.08 0.91 4.40 -63.59 -0.28 0.63 16 12 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.16 -1.53 4.40 -24.49 -0.11 -1.64 16 14 N -0.52 -6.52 5.05 -221.41 -1.12 -7.64 16 15 C 0.08 1.11 3.54 -4.98 -0.02 1.09 16 16 C -0.17 -2.87 5.33 -104.58 -0.56 -3.43 16 17 C -0.07 -1.23 9.58 -39.61 -0.38 -1.61 16 18 C -0.23 -5.06 9.17 -39.39 -0.36 -5.42 16 19 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 20 O -0.20 -5.86 9.16 0.05 0.00 -5.86 16 21 C -0.47 -13.40 9.49 30.89 0.29 -13.11 16 22 H 0.08 2.20 5.20 -52.48 -0.27 1.93 16 23 C 0.01 0.25 5.49 -17.51 -0.10 0.15 16 24 N -0.88 -26.69 13.70 55.48 0.76 -25.93 16 25 Si 1.10 23.89 29.92 -169.99 -5.09 18.80 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 29 C -0.20 -4.23 9.99 -39.39 -0.39 -4.62 16 30 C -0.05 -0.99 9.71 -39.61 -0.38 -1.38 16 31 C 0.04 0.42 5.86 -2.60 -0.02 0.41 16 32 H 0.07 0.25 7.91 -51.93 -0.41 -0.16 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.40 2.17 8.44 -40.82 -0.34 1.82 16 36 H 0.06 0.50 8.01 -51.93 -0.42 0.09 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.55 7.83 -51.93 -0.41 0.14 16 40 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 41 H 0.08 0.88 4.74 -51.93 -0.25 0.63 16 42 H 0.07 0.99 7.55 -51.93 -0.39 0.60 16 43 H 0.07 0.89 3.16 -51.92 -0.16 0.73 16 44 H 0.10 1.57 6.05 -52.49 -0.32 1.25 16 45 H 0.13 2.79 5.64 -52.48 -0.30 2.50 16 46 H 0.28 8.73 7.97 -40.82 -0.33 8.41 16 47 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 48 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.06 0.70 6.07 -51.93 -0.32 0.38 16 LS Contribution 382.71 15.07 5.77 5.77 Total: -1.00 -33.70 382.71 -9.98 -43.68 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.08 Total: 8.99 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -3.04 Total: -23.65 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.63 Total: -39.85 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.09 Total: 18.80 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.70 -9.98 -43.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046998728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.654 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds