Wall clock time and date at job start Wed Apr 1 2020 03:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21275 * 120.00555 * 2 1 4 4 N 1.34783 * 119.99690 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00081 * 180.02562 * 4 2 1 6 6 H 1.09008 * 109.32003 * 325.36021 * 5 4 2 7 7 C 1.53025 * 109.32402 * 84.99655 * 5 4 2 8 8 C 1.53963 * 108.84003 * 175.70875 * 7 5 4 9 9 H 1.09000 * 112.97098 * 168.20978 * 8 7 5 10 10 C 1.55410 * 107.21446 * 293.54614 * 8 7 5 11 11 C 1.55173 * 100.42245 * 73.57361 * 10 8 7 12 12 H 1.09002 * 113.06343 * 163.03218 * 11 10 8 13 13 C 1.52985 * 109.32641 * 205.89086 * 5 4 2 14 14 N 1.48209 * 104.22117 * 40.59593 * 11 10 8 15 15 C 1.46894 * 110.99951 * 211.58903 * 14 11 10 16 16 C 1.50701 * 109.47438 * 275.55376 * 15 14 11 17 17 C 1.38299 * 119.92999 * 95.61848 * 16 15 14 18 18 C 1.38102 * 120.06929 * 180.02562 * 17 16 15 19 19 C 1.38878 * 119.92914 * 0.02562 * 18 17 16 20 20 O 1.35749 * 120.07217 * 179.97438 * 19 18 17 21 21 C 1.34830 * 116.99719 * 5.58439 * 20 19 18 22 22 H 1.08003 * 120.00250 * 354.95066 * 21 20 19 23 23 C 1.38663 * 120.00047 * 174.94428 * 21 20 19 24 24 N 1.31552 * 119.99899 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99735 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47199 * 269.99845 * 25 23 21 27 27 H 1.48499 * 109.46808 * 150.00385 * 25 23 21 28 28 H 1.48499 * 109.47526 * 30.00142 * 25 23 21 29 29 C 1.38883 * 119.86486 * 0.25025 * 19 18 17 30 30 C 1.38103 * 119.92589 * 359.49602 * 29 19 18 31 31 C 1.47501 * 108.15291 * 333.58309 * 14 11 10 32 32 H 1.09001 * 109.47553 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47304 * 300.00616 * 1 2 3 34 34 H 1.09001 * 109.47286 * 59.99884 * 1 2 3 35 35 H 0.96998 * 120.00137 * 0.02562 * 4 2 1 36 36 H 1.09003 * 109.57392 * 55.90624 * 7 5 4 37 37 H 1.08991 * 109.68812 * 295.57967 * 7 5 4 38 38 H 1.08999 * 111.22975 * 191.36570 * 10 8 7 39 39 H 1.09003 * 111.22210 * 315.78536 * 10 8 7 40 40 H 1.08993 * 109.53581 * 304.47558 * 13 5 4 41 41 H 1.09002 * 109.53070 * 64.70822 * 13 5 4 42 42 H 1.08999 * 109.47221 * 155.55527 * 15 14 11 43 43 H 1.09007 * 109.47585 * 35.55292 * 15 14 11 44 44 H 1.07994 * 119.96963 * 0.02562 * 17 16 15 45 45 H 1.08003 * 120.03762 * 179.97438 * 18 17 16 46 46 H 0.96995 * 120.00139 * 359.97438 * 24 23 21 47 47 H 1.07999 * 120.03751 * 179.72216 * 29 19 18 48 48 H 1.08001 * 119.96386 * 180.22917 * 30 29 19 49 49 H 1.09002 * 109.97942 * 120.37466 * 31 14 11 50 50 H 1.08997 * 109.98264 * 241.63450 * 31 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1674 0.0011 6 1 4.0067 -0.3212 -0.5837 7 6 4.1516 -1.0412 1.4398 8 6 5.6873 -1.1509 1.4383 9 1 6.1349 -0.8685 2.3912 10 6 6.0446 -2.5987 1.0008 11 6 5.7186 -2.5226 -0.5144 12 1 6.1649 -3.3345 -1.0886 13 6 4.1523 -2.4663 -0.6288 14 7 6.2228 -1.1919 -0.9289 15 6 5.4085 -0.6362 -2.0179 16 6 5.8985 -1.1753 -3.3371 17 6 5.2859 -2.2792 -3.9019 18 6 5.7330 -2.7759 -5.1104 19 6 6.7992 -2.1660 -5.7584 20 8 7.2414 -2.6522 -6.9463 21 6 6.5310 -3.6558 -7.4994 22 1 5.7024 -4.0916 -6.9609 23 6 6.8642 -4.1284 -8.7597 24 7 7.8737 -3.5979 -9.4155 25 14 5.8795 -5.5184 -9.5263 26 1 6.4858 -6.8208 -9.1500 27 1 5.8904 -5.3761 -11.0044 28 1 4.4795 -5.4635 -9.0340 29 6 7.4160 -1.0612 -5.1860 30 6 6.9609 -0.5660 -3.9797 31 6 6.2043 -0.3058 0.2501 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.6958 -2.0073 0.0005 36 1 3.7289 -1.8416 2.0471 37 1 3.8549 -0.0760 1.8500 38 1 7.1005 -2.8121 1.1669 39 1 5.4124 -3.3303 1.5040 40 1 3.7239 -3.3184 -0.1012 41 1 3.8591 -2.5010 -1.6781 42 1 5.4920 0.4505 -2.0160 43 1 4.3661 -0.9208 -1.8739 44 1 4.4571 -2.7533 -3.3973 45 1 5.2545 -3.6382 -5.5508 46 1 8.3847 -2.8759 -9.0176 47 1 8.2483 -0.5875 -5.6853 48 1 7.4376 0.2954 -3.5358 49 1 7.2109 0.0557 0.4602 50 1 5.5357 0.5365 0.0725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046998728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:17 Heat of formation + Delta-G solvation = -34.487773 kcal Electronic energy + Delta-G solvation = -30878.514137 eV Core-core repulsion = 26870.909244 eV Total energy + Delta-G solvation = -4007.604893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.55222 -40.82573 -40.22305 -38.45453 -36.00767 -34.73637 -34.01015 -32.38731 -31.85720 -31.54356 -30.56225 -29.31252 -27.14934 -26.24496 -25.37230 -23.70637 -23.24411 -22.37431 -21.88648 -20.67752 -20.57066 -20.17294 -18.75171 -18.02339 -17.82919 -17.07082 -16.79192 -16.21402 -16.13619 -16.09086 -15.68075 -15.61314 -15.34269 -15.10780 -14.96507 -14.59413 -14.41206 -14.33965 -14.06324 -13.64161 -13.38408 -13.29113 -13.22696 -13.08883 -12.98042 -12.88134 -12.68841 -12.55152 -12.28497 -12.18522 -12.07004 -11.92640 -11.87097 -11.65660 -11.46971 -11.29349 -11.11553 -10.87030 -10.74911 -10.08602 -9.84075 -9.17797 -8.97187 -8.92070 -6.23860 0.53528 0.62481 1.48322 1.62067 1.62516 1.77383 2.21184 2.36208 2.73817 3.04665 3.23561 3.35297 3.47861 3.58101 3.74781 3.88944 3.95518 3.97585 4.02854 4.04609 4.11103 4.16399 4.31109 4.34910 4.44355 4.49588 4.52905 4.56250 4.59587 4.63963 4.66400 4.70289 4.76729 4.92713 4.98442 5.01015 5.05754 5.07957 5.16267 5.22581 5.22777 5.24217 5.25672 5.30352 5.49018 5.54192 5.70269 5.75032 6.03254 6.10135 6.12852 6.30057 6.56560 6.87446 7.25894 7.64204 8.51144 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.002621 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.017115 B =10679.136721 C =11445.716724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.501 3.499 3 O -0.600 6.600 4 N -0.715 5.715 5 C 0.120 3.880 6 H 0.081 0.919 7 C -0.115 4.115 8 C -0.100 4.100 9 H 0.109 0.891 10 C -0.112 4.112 11 C 0.073 3.927 12 H 0.094 0.906 13 C -0.154 4.154 14 N -0.530 5.530 15 C 0.087 3.913 16 C -0.140 4.140 17 C -0.060 4.060 18 C -0.236 4.236 19 C 0.116 3.884 20 O -0.254 6.254 21 C -0.486 4.486 22 H 0.092 0.908 23 C -0.046 4.046 24 N -0.920 5.920 25 Si 1.148 2.852 26 H -0.263 1.263 27 H -0.274 1.274 28 H -0.258 1.258 29 C -0.204 4.204 30 C -0.053 4.053 31 C 0.039 3.961 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.416 0.584 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.138 0.862 45 H 0.118 0.882 46 H 0.259 0.741 47 H 0.111 0.889 48 H 0.137 0.863 49 H 0.076 0.924 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.815 0.979 26.975 30.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.290 3.710 3 O -0.482 6.482 4 N -0.367 5.367 5 C 0.015 3.985 6 H 0.099 0.901 7 C -0.153 4.153 8 C -0.120 4.120 9 H 0.127 0.873 10 C -0.150 4.150 11 C -0.035 4.035 12 H 0.112 0.888 13 C -0.192 4.192 14 N -0.254 5.254 15 C -0.040 4.040 16 C -0.142 4.142 17 C -0.078 4.078 18 C -0.255 4.255 19 C 0.066 3.934 20 O -0.162 6.162 21 C -0.562 4.562 22 H 0.109 0.891 23 C -0.242 4.242 24 N -0.555 5.555 25 Si 0.963 3.037 26 H -0.188 1.188 27 H -0.199 1.199 28 H -0.182 1.182 29 C -0.224 4.224 30 C -0.071 4.071 31 C -0.088 4.088 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.253 0.747 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.156 0.844 45 H 0.136 0.864 46 H 0.068 0.932 47 H 0.129 0.871 48 H 0.155 0.845 49 H 0.094 0.906 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.831 0.807 25.290 28.836 hybrid contribution -0.283 1.121 1.026 1.545 sum -14.114 1.928 26.316 29.924 Atomic orbital electron populations 1.21878 0.88451 1.06362 1.05725 1.21602 0.92254 0.83006 0.74094 1.90711 1.72060 1.33300 1.52091 1.46167 1.06782 1.09243 1.74487 1.21581 0.80335 0.99182 0.97391 0.90084 1.22087 0.95361 1.02074 0.95814 1.22735 0.94726 0.95679 0.98857 0.87262 1.22911 1.02479 0.96325 0.93263 1.23677 0.91428 0.91775 0.96628 0.88803 1.23104 0.97310 0.97419 1.01417 1.63651 1.51945 1.02942 1.06819 1.21517 0.96746 0.98028 0.87699 1.19611 0.98746 0.98233 0.97577 1.20895 0.98642 0.95033 0.93248 1.21224 1.01127 1.04152 0.99035 1.19768 0.93834 0.93395 0.86395 1.83648 1.51246 1.49378 1.31958 1.22618 1.16220 1.13339 1.04016 0.89061 1.28420 0.98836 1.04463 0.92474 1.70677 1.19173 1.25354 1.40273 0.82549 0.74280 0.71093 0.75746 1.18818 1.19909 1.18175 1.20430 1.04347 0.98189 0.99391 1.20796 0.95186 0.98917 0.92236 1.23065 1.01082 0.95145 0.89517 0.87559 0.87994 0.88605 0.74704 0.89755 0.93106 0.90595 0.88489 0.88253 0.91261 0.91517 0.90310 0.84445 0.86377 0.93224 0.87101 0.84500 0.90583 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.39 71.23 0.74 -0.69 16 2 C 0.50 8.94 7.90 87.65 0.69 9.63 16 3 O -0.60 -17.14 16.75 -3.02 -0.05 -17.19 16 4 N -0.71 -9.53 5.06 -442.51 -2.24 -11.77 16 5 C 0.12 1.99 1.57 44.99 0.07 2.06 16 6 H 0.08 1.88 3.03 -2.38 -0.01 1.87 16 7 C -0.11 -1.68 5.07 30.93 0.16 -1.52 16 8 C -0.10 -1.44 4.26 -9.06 -0.04 -1.48 16 9 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 10 C -0.11 -1.53 6.19 32.17 0.20 -1.33 16 11 C 0.07 1.37 4.40 46.87 0.21 1.58 16 12 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 13 C -0.15 -2.32 4.40 32.05 0.14 -2.18 16 14 N -0.53 -12.24 5.05 -854.40 -4.31 -16.56 16 15 C 0.09 2.27 3.54 85.56 0.30 2.57 16 16 C -0.14 -4.62 5.33 -19.83 -0.11 -4.73 16 17 C -0.06 -2.08 9.58 22.25 0.21 -1.87 16 18 C -0.24 -10.48 9.17 22.39 0.21 -10.28 16 19 C 0.12 5.91 6.65 22.58 0.15 6.06 16 20 O -0.25 -15.50 9.16 -22.72 -0.21 -15.70 16 21 C -0.49 -28.87 9.49 67.92 0.64 -28.22 16 22 H 0.09 5.03 5.20 -2.91 -0.02 5.01 16 23 C -0.05 -2.69 5.49 84.84 0.47 -2.23 16 24 N -0.92 -58.58 13.70 21.62 0.30 -58.28 16 25 Si 1.15 48.49 29.92 68.60 2.05 50.54 16 26 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 28 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 29 C -0.20 -9.09 9.99 22.39 0.22 -8.87 16 30 C -0.05 -1.92 9.71 22.25 0.22 -1.71 16 31 C 0.04 0.78 5.86 86.77 0.51 1.29 16 32 H 0.11 0.25 7.91 -2.39 -0.02 0.23 16 33 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.42 2.72 8.44 -92.71 -0.78 1.93 16 36 H 0.08 0.92 8.01 -2.39 -0.02 0.91 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 0.93 7.83 -2.39 -0.02 0.91 16 40 H 0.10 0.99 8.04 -2.39 -0.02 0.97 16 41 H 0.07 1.23 4.74 -2.39 -0.01 1.21 16 42 H 0.07 1.80 7.55 -2.39 -0.02 1.79 16 43 H 0.08 1.92 3.16 -2.38 -0.01 1.91 16 44 H 0.14 3.80 6.05 -2.91 -0.02 3.78 16 45 H 0.12 5.34 5.64 -2.91 -0.02 5.33 16 46 H 0.26 17.28 7.97 -92.71 -0.74 16.54 16 47 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 48 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 49 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.05 1.07 6.07 -2.39 -0.01 1.05 16 Total: -1.00 -79.96 382.71 0.76 -79.20 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.23 Total: 31.66 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 4.99 Total: -41.90 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -6.26 Total: -86.61 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.26 Total: -32.89 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.05 Total: 50.54 kcal Total: -79.96 0.76 -79.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046998728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.715 kcal (2) G-P(sol) polarization free energy of solvation -79.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds