Wall clock time and date at job start Wed Apr 1 2020 03:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.47455 * 2 1 4 4 C 1.35911 * 117.00608 * 179.97438 * 3 2 1 5 5 C 1.38849 * 119.98037 * 0.02881 * 4 3 2 6 6 C 1.38247 * 120.23758 * 179.97438 * 5 4 3 7 7 C 1.37997 * 120.20801 * 359.76242 * 6 5 4 8 8 C 1.39570 * 119.96630 * 0.51306 * 7 6 5 9 9 C 1.47851 * 120.12051 * 179.74172 * 8 7 6 10 10 O 1.21557 * 120.00053 * 179.72490 * 9 8 7 11 11 N 1.34777 * 120.00433 * 359.72511 * 9 8 7 12 12 C 1.46499 * 120.00229 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.32350 * 34.64718 * 12 11 9 14 14 C 1.54490 * 109.19156 * 153.45695 * 12 11 9 15 15 C 1.53970 * 108.07794 * 175.05576 * 14 12 11 16 16 H 1.09002 * 112.99812 * 169.19031 * 15 14 12 17 17 C 1.55431 * 107.19885 * 294.58378 * 15 14 12 18 18 C 1.55168 * 100.35455 * 73.65866 * 17 15 14 19 19 H 1.08999 * 113.05006 * 162.98676 * 18 17 15 20 20 C 1.52978 * 109.32563 * 274.99961 * 12 11 9 21 21 N 1.47787 * 104.25640 * 40.54440 * 18 17 15 22 22 C 1.36937 * 125.85500 * 153.49810 * 21 18 17 23 23 H 1.07996 * 120.00155 * 0.03014 * 22 21 18 24 24 C 1.38814 * 119.99892 * 180.02562 * 22 21 18 25 25 N 1.31615 * 120.00043 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99797 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47359 * 60.00175 * 26 24 22 28 28 H 1.48495 * 109.46783 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46848 * 300.00137 * 26 24 22 30 30 C 1.47081 * 108.29001 * 333.54340 * 21 18 17 31 31 C 1.38449 * 119.98783 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.46414 * 299.99455 * 1 2 3 33 33 H 1.08995 * 109.47338 * 59.99629 * 1 2 3 34 34 H 1.08999 * 109.46881 * 179.97438 * 1 2 3 35 35 H 1.09011 * 109.47115 * 240.00710 * 2 1 3 36 36 H 1.09003 * 109.47891 * 120.00682 * 2 1 3 37 37 H 1.08001 * 119.88482 * 359.97438 * 5 4 3 38 38 H 1.08009 * 119.89682 * 180.02562 * 6 5 4 39 39 H 1.08003 * 120.02327 * 180.25952 * 7 6 5 40 40 H 0.97007 * 119.99210 * 0.02562 * 11 9 8 41 41 H 1.09005 * 109.79999 * 55.57363 * 14 12 11 42 42 H 1.09004 * 110.10633 * 294.71407 * 14 12 11 43 43 H 1.08999 * 111.23001 * 191.43461 * 17 15 14 44 44 H 1.08999 * 111.23373 * 315.87637 * 17 15 14 45 45 H 1.09000 * 109.53722 * 64.75452 * 20 12 11 46 46 H 1.09000 * 109.53799 * 304.52501 * 20 12 11 47 47 H 0.96999 * 119.99651 * 180.02562 * 25 24 22 48 48 H 1.08998 * 109.97960 * 241.73400 * 30 21 18 49 49 H 1.09002 * 109.97557 * 120.45016 * 30 21 18 50 50 H 1.08000 * 120.10179 * 0.05050 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1992 0.4240 0.0005 6 6 5.5706 0.5990 0.0005 7 6 6.1083 1.8699 -0.0044 8 6 5.2665 2.9831 0.0015 9 6 5.8389 4.3463 0.0021 10 8 5.1037 5.3143 0.0022 11 7 7.1760 4.5158 0.0026 12 6 7.7432 5.8665 0.0026 13 1 7.1025 6.5267 0.5871 14 6 9.1431 5.8295 0.6551 15 6 9.7659 7.2320 0.5297 16 1 10.6717 7.3504 1.1244 17 6 9.9883 7.5024 -0.9847 18 6 8.5263 7.7510 -1.4412 19 1 8.4601 8.2473 -2.4094 20 6 7.8238 6.3818 -1.4355 21 7 7.9370 8.5574 -0.3519 22 6 6.8946 9.4363 -0.4783 23 1 6.4288 9.5868 -1.4410 24 6 6.4365 10.1339 0.6310 25 7 7.0044 9.9508 1.8041 26 14 5.0140 11.3324 0.4586 27 1 3.8133 10.6086 -0.0309 28 1 4.7196 11.9442 1.7793 29 1 5.3788 12.3976 -0.5097 30 6 8.6628 8.2548 0.8910 31 6 3.8826 2.8049 0.0011 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 3.7841 -0.5731 0.0004 38 1 6.2232 -0.2616 0.0000 39 1 7.1801 2.0032 -0.0086 40 1 7.7627 3.7432 0.0021 41 1 9.7716 5.1032 0.1396 42 1 9.0587 5.5601 1.7080 43 1 10.6065 8.3863 -1.1411 44 1 10.4149 6.6317 -1.4827 45 1 6.8178 6.4866 -1.8420 46 1 8.3922 5.6781 -2.0436 47 1 6.6840 10.4380 2.5793 48 1 7.9815 7.8241 1.6248 49 1 9.1138 9.1636 1.2895 50 1 3.2260 3.6624 0.0019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047154979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:15 Heat of formation + Delta-G solvation = -16.153724 kcal Electronic energy + Delta-G solvation = -30509.360172 eV Core-core repulsion = 26502.550304 eV Total energy + Delta-G solvation = -4006.809869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.57684 -39.85213 -38.72981 -37.18741 -34.52393 -32.81279 -32.30269 -31.37254 -30.64013 -30.00652 -29.17033 -28.09358 -25.24720 -24.81053 -23.11478 -23.04082 -22.57917 -21.33323 -20.11599 -19.41414 -19.01874 -18.20455 -16.97240 -16.63025 -16.41150 -16.32558 -15.94950 -15.42701 -14.71531 -14.61141 -14.34332 -14.12589 -13.78108 -13.58032 -13.51340 -13.47184 -12.99633 -12.80102 -12.68787 -12.28462 -12.23974 -11.95178 -11.90965 -11.77537 -11.68084 -11.52577 -11.17567 -11.12099 -11.05960 -10.67078 -10.60377 -10.47254 -9.93869 -9.85809 -9.70331 -9.62817 -9.41772 -9.25836 -9.17878 -8.55222 -8.47320 -8.44193 -6.71784 -5.58012 -2.90139 0.73969 1.21810 2.83915 3.00262 3.50791 3.52144 3.56356 3.58510 3.85896 4.47465 4.55158 4.58208 4.62989 4.71330 4.82924 4.87045 4.95720 5.11872 5.23653 5.28024 5.28957 5.37580 5.42451 5.48120 5.62973 5.68168 5.68378 5.75255 5.92340 5.94948 6.02512 6.08405 6.11164 6.12564 6.15526 6.17740 6.21158 6.27507 6.42305 6.61314 6.66597 6.73390 6.92049 6.93731 7.03688 7.12930 7.17065 7.66988 7.68688 7.85967 7.93896 8.37219 8.58299 9.34892 9.95294 10.61048 11.53959 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012203 B = 0.002870 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.950135 B = 9752.998934 C =11502.142520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.313 6.313 4 C 0.123 3.877 5 C -0.192 4.192 6 C -0.088 4.088 7 C -0.127 4.127 8 C -0.084 4.084 9 C 0.547 3.453 10 O -0.514 6.514 11 N -0.721 5.721 12 C 0.146 3.854 13 H 0.116 0.884 14 C -0.111 4.111 15 C -0.120 4.120 16 H 0.080 0.920 17 C -0.127 4.127 18 C 0.157 3.843 19 H 0.065 0.935 20 C -0.135 4.135 21 N -0.595 5.595 22 C -0.221 4.221 23 H 0.075 0.925 24 C -0.007 4.007 25 N -0.924 5.924 26 Si 0.909 3.091 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.287 1.287 30 C 0.180 3.820 31 C -0.095 4.095 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.390 0.610 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.043 0.957 47 H 0.251 0.749 48 H 0.046 0.954 49 H 0.044 0.956 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 -24.050 -3.458 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.227 6.227 4 C 0.077 3.923 5 C -0.211 4.211 6 C -0.106 4.106 7 C -0.146 4.146 8 C -0.088 4.088 9 C 0.332 3.668 10 O -0.389 6.389 11 N -0.371 5.371 12 C 0.043 3.957 13 H 0.134 0.866 14 C -0.149 4.149 15 C -0.140 4.140 16 H 0.099 0.901 17 C -0.166 4.166 18 C 0.049 3.951 19 H 0.083 0.917 20 C -0.176 4.176 21 N -0.319 5.319 22 C -0.349 4.349 23 H 0.093 0.907 24 C -0.202 4.202 25 N -0.572 5.572 26 Si 0.739 3.261 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.214 1.214 30 C 0.056 3.944 31 C -0.114 4.114 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.224 0.776 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.784 -23.007 -3.284 23.308 hybrid contribution -0.429 -0.176 -0.013 0.464 sum -2.213 -23.183 -3.297 23.521 Atomic orbital electron populations 1.21780 0.92641 1.02808 1.03798 1.22796 0.96040 0.81969 1.01292 1.86120 1.18733 1.29240 1.88654 1.18821 0.82540 0.93732 0.97165 1.21373 0.94460 0.98003 1.07266 1.20842 0.94276 0.97107 0.98394 1.21217 0.99599 0.91928 1.01847 1.19909 0.93244 0.93675 1.01930 1.18168 0.82866 0.88164 0.77556 1.90894 1.59246 1.40911 1.47854 1.46131 1.06037 1.09921 1.75051 1.21521 0.94852 0.81430 0.97862 0.86617 1.22214 0.95119 0.97647 0.99932 1.22838 0.99332 0.95324 0.96478 0.90126 1.22959 0.97599 1.00088 0.95907 1.21515 0.90585 0.89977 0.93074 0.91685 1.22600 1.01266 0.98491 0.95289 1.44606 1.36951 1.47219 1.03159 1.18962 1.06577 1.14560 0.94792 0.90674 1.24726 0.99566 1.00387 0.95564 1.69927 1.43159 1.45160 0.98908 0.86239 0.82536 0.80822 0.76459 1.21118 1.21744 1.21380 1.21311 0.90081 0.94352 0.88688 1.20543 0.94312 0.95575 1.00969 0.91366 0.91386 0.90382 0.92038 0.92021 0.85308 0.85247 0.85424 0.77624 0.92819 0.91968 0.91845 0.92254 0.92174 0.93810 0.93902 0.93585 0.93795 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.31 -3.67 10.13 -19.46 -0.20 -3.87 16 4 C 0.12 1.50 6.68 -39.28 -0.26 1.24 16 5 C -0.19 -1.84 9.03 -39.35 -0.36 -2.20 16 6 C -0.09 -0.79 10.03 -39.67 -0.40 -1.19 16 7 C -0.13 -1.35 9.54 -39.17 -0.37 -1.73 16 8 C -0.08 -1.21 5.87 -104.99 -0.62 -1.83 16 9 C 0.55 9.79 7.74 -12.33 -0.10 9.70 16 10 O -0.51 -11.92 16.00 5.32 0.09 -11.84 16 11 N -0.72 -11.28 5.01 -54.00 -0.27 -11.55 16 12 C 0.15 2.74 2.09 -67.16 -0.14 2.60 16 13 H 0.12 2.85 5.36 -51.93 -0.28 2.58 16 14 C -0.11 -1.77 5.11 -25.44 -0.13 -1.90 16 15 C -0.12 -2.16 4.27 -87.92 -0.38 -2.54 16 16 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.13 -2.18 6.19 -24.29 -0.15 -2.33 16 18 C 0.16 3.23 4.30 -65.61 -0.28 2.95 16 19 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 20 C -0.14 -2.58 5.30 -26.28 -0.14 -2.72 16 21 N -0.59 -15.13 2.43 -161.37 -0.39 -15.52 16 22 C -0.22 -6.33 10.29 -15.06 -0.16 -6.48 16 23 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 24 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 25 N -0.92 -27.89 10.35 55.49 0.57 -27.32 16 26 Si 0.91 23.40 29.55 -169.99 -5.02 18.37 16 27 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 C 0.18 4.34 4.09 -2.83 -0.01 4.33 16 31 C -0.09 -1.38 9.53 -39.02 -0.37 -1.76 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.38 7.66 -51.92 -0.40 -0.02 16 36 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 37 H 0.13 0.89 6.28 -52.49 -0.33 0.56 16 38 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.13 1.04 6.40 -52.48 -0.34 0.71 16 40 H 0.39 4.55 6.64 -40.82 -0.27 4.28 16 41 H 0.05 0.70 8.03 -51.93 -0.42 0.28 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.86 7.80 -51.93 -0.40 0.45 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.04 0.71 8.00 -51.93 -0.42 0.29 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.05 1.24 6.14 -51.93 -0.32 0.93 16 49 H 0.04 1.18 7.40 -51.93 -0.38 0.80 16 50 H 0.15 2.34 7.65 -52.49 -0.40 1.94 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -34.70 390.41 -10.41 -45.11 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.70 Total: 4.82 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.37 Total: -4.09 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.09 Total: -54.39 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.11 Total: -15.71 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.70 -10.41 -45.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047154979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.954 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds