Wall clock time and date at job start Wed Apr 1 2020 03:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.47455 * 2 1 4 4 C 1.35911 * 117.00608 * 179.97438 * 3 2 1 5 5 C 1.38849 * 119.98037 * 0.02881 * 4 3 2 6 6 C 1.38247 * 120.23758 * 179.97438 * 5 4 3 7 7 C 1.37997 * 120.20801 * 359.76242 * 6 5 4 8 8 C 1.39570 * 119.96630 * 0.51306 * 7 6 5 9 9 C 1.47851 * 120.12051 * 179.74172 * 8 7 6 10 10 O 1.21557 * 120.00053 * 179.72490 * 9 8 7 11 11 N 1.34777 * 120.00433 * 359.72511 * 9 8 7 12 12 C 1.46499 * 120.00229 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.32350 * 34.64718 * 12 11 9 14 14 C 1.54490 * 109.19156 * 153.45695 * 12 11 9 15 15 C 1.53970 * 108.07794 * 175.05576 * 14 12 11 16 16 H 1.09002 * 112.99812 * 169.19031 * 15 14 12 17 17 C 1.55431 * 107.19885 * 294.58378 * 15 14 12 18 18 C 1.55168 * 100.35455 * 73.65866 * 17 15 14 19 19 H 1.08999 * 113.05006 * 162.98676 * 18 17 15 20 20 C 1.52978 * 109.32563 * 274.99961 * 12 11 9 21 21 N 1.47787 * 104.25640 * 40.54440 * 18 17 15 22 22 C 1.36937 * 125.85500 * 153.49810 * 21 18 17 23 23 H 1.07996 * 120.00155 * 0.03014 * 22 21 18 24 24 C 1.38814 * 119.99892 * 180.02562 * 22 21 18 25 25 N 1.31615 * 120.00043 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99797 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47359 * 60.00175 * 26 24 22 28 28 H 1.48495 * 109.46783 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46848 * 300.00137 * 26 24 22 30 30 C 1.47081 * 108.29001 * 333.54340 * 21 18 17 31 31 C 1.38449 * 119.98783 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.46414 * 299.99455 * 1 2 3 33 33 H 1.08995 * 109.47338 * 59.99629 * 1 2 3 34 34 H 1.08999 * 109.46881 * 179.97438 * 1 2 3 35 35 H 1.09011 * 109.47115 * 240.00710 * 2 1 3 36 36 H 1.09003 * 109.47891 * 120.00682 * 2 1 3 37 37 H 1.08001 * 119.88482 * 359.97438 * 5 4 3 38 38 H 1.08009 * 119.89682 * 180.02562 * 6 5 4 39 39 H 1.08003 * 120.02327 * 180.25952 * 7 6 5 40 40 H 0.97007 * 119.99210 * 0.02562 * 11 9 8 41 41 H 1.09005 * 109.79999 * 55.57363 * 14 12 11 42 42 H 1.09004 * 110.10633 * 294.71407 * 14 12 11 43 43 H 1.08999 * 111.23001 * 191.43461 * 17 15 14 44 44 H 1.08999 * 111.23373 * 315.87637 * 17 15 14 45 45 H 1.09000 * 109.53722 * 64.75452 * 20 12 11 46 46 H 1.09000 * 109.53799 * 304.52501 * 20 12 11 47 47 H 0.96999 * 119.99651 * 180.02562 * 25 24 22 48 48 H 1.08998 * 109.97960 * 241.73400 * 30 21 18 49 49 H 1.09002 * 109.97557 * 120.45016 * 30 21 18 50 50 H 1.08000 * 120.10179 * 0.05050 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1992 0.4240 0.0005 6 6 5.5706 0.5990 0.0005 7 6 6.1083 1.8699 -0.0044 8 6 5.2665 2.9831 0.0015 9 6 5.8389 4.3463 0.0021 10 8 5.1037 5.3143 0.0022 11 7 7.1760 4.5158 0.0026 12 6 7.7432 5.8665 0.0026 13 1 7.1025 6.5267 0.5871 14 6 9.1431 5.8295 0.6551 15 6 9.7659 7.2320 0.5297 16 1 10.6717 7.3504 1.1244 17 6 9.9883 7.5024 -0.9847 18 6 8.5263 7.7510 -1.4412 19 1 8.4601 8.2473 -2.4094 20 6 7.8238 6.3818 -1.4355 21 7 7.9370 8.5574 -0.3519 22 6 6.8946 9.4363 -0.4783 23 1 6.4288 9.5868 -1.4410 24 6 6.4365 10.1339 0.6310 25 7 7.0044 9.9508 1.8041 26 14 5.0140 11.3324 0.4586 27 1 3.8133 10.6086 -0.0309 28 1 4.7196 11.9442 1.7793 29 1 5.3788 12.3976 -0.5097 30 6 8.6628 8.2548 0.8910 31 6 3.8826 2.8049 0.0011 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 3.7841 -0.5731 0.0004 38 1 6.2232 -0.2616 0.0000 39 1 7.1801 2.0032 -0.0086 40 1 7.7627 3.7432 0.0021 41 1 9.7716 5.1032 0.1396 42 1 9.0587 5.5601 1.7080 43 1 10.6065 8.3863 -1.1411 44 1 10.4149 6.6317 -1.4827 45 1 6.8178 6.4866 -1.8420 46 1 8.3922 5.6781 -2.0436 47 1 6.6840 10.4380 2.5793 48 1 7.9815 7.8241 1.6248 49 1 9.1138 9.1636 1.2895 50 1 3.2260 3.6624 0.0019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047154979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:14 Heat of formation + Delta-G solvation = -39.462104 kcal Electronic energy + Delta-G solvation = -30510.370900 eV Core-core repulsion = 26502.550304 eV Total energy + Delta-G solvation = -4007.820596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74015 -41.09451 -40.08933 -38.17308 -36.15129 -34.73982 -32.95865 -32.49901 -32.28679 -31.25236 -30.53348 -29.54454 -27.19946 -25.71193 -24.92234 -24.01724 -23.43569 -22.58067 -21.43970 -21.16067 -20.32520 -19.45439 -18.91495 -17.69939 -17.55375 -17.09026 -17.04636 -16.60775 -16.45162 -16.17522 -15.93499 -15.53349 -15.25741 -14.77320 -14.46584 -14.39484 -14.30627 -14.12219 -13.80563 -13.47209 -13.39669 -13.38034 -13.25694 -13.07818 -12.99555 -12.91873 -12.65464 -12.59767 -12.52190 -12.16134 -11.93183 -11.89833 -11.67953 -11.64247 -11.40549 -11.18302 -11.03465 -10.81575 -10.67556 -10.20551 -9.93327 -9.30821 -8.82329 -7.83376 -5.14635 -0.24107 0.36253 1.36762 1.42739 1.46888 1.83455 1.95593 2.36868 2.48442 2.81300 3.34691 3.60882 3.67178 3.76178 3.83721 3.90182 4.00448 4.05363 4.10697 4.11394 4.15712 4.31414 4.35690 4.39152 4.44869 4.48453 4.53224 4.61765 4.68529 4.77594 4.80375 4.85208 4.89521 4.91903 5.10682 5.14060 5.20592 5.24419 5.28115 5.30584 5.32537 5.35605 5.40234 5.49326 5.50828 5.61680 5.69032 5.75837 5.85477 6.23894 6.39842 6.59624 7.14632 7.28894 7.83562 8.47038 9.26363 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012203 B = 0.002870 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.950135 B = 9752.998934 C =11502.142520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.044 3.956 3 O -0.342 6.342 4 C 0.114 3.886 5 C -0.177 4.177 6 C -0.074 4.074 7 C -0.116 4.116 8 C -0.105 4.105 9 C 0.541 3.459 10 O -0.588 6.588 11 N -0.699 5.699 12 C 0.152 3.848 13 H 0.044 0.956 14 C -0.099 4.099 15 C -0.108 4.108 16 H 0.111 0.889 17 C -0.108 4.108 18 C 0.140 3.860 19 H 0.062 0.938 20 C -0.123 4.123 21 N -0.615 5.615 22 C -0.229 4.229 23 H 0.070 0.930 24 C -0.067 4.067 25 N -0.948 5.948 26 Si 0.966 3.034 27 H -0.292 1.292 28 H -0.291 1.291 29 H -0.271 1.271 30 C 0.188 3.812 31 C -0.131 4.131 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.166 0.834 38 H 0.178 0.822 39 H 0.160 0.840 40 H 0.415 0.585 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.015 0.985 46 H 0.091 0.909 47 H 0.243 0.757 48 H 0.002 0.998 49 H 0.002 0.998 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 -29.227 -4.705 29.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.030 4.030 3 O -0.257 6.257 4 C 0.069 3.931 5 C -0.195 4.195 6 C -0.091 4.091 7 C -0.135 4.135 8 C -0.109 4.109 9 C 0.329 3.671 10 O -0.468 6.468 11 N -0.351 5.351 12 C 0.047 3.953 13 H 0.062 0.938 14 C -0.137 4.137 15 C -0.127 4.127 16 H 0.129 0.871 17 C -0.146 4.146 18 C 0.033 3.967 19 H 0.080 0.920 20 C -0.164 4.164 21 N -0.339 5.339 22 C -0.358 4.358 23 H 0.087 0.913 24 C -0.260 4.260 25 N -0.598 5.598 26 Si 0.795 3.205 27 H -0.219 1.219 28 H -0.217 1.217 29 H -0.197 1.197 30 C 0.063 3.937 31 C -0.151 4.151 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.183 0.817 38 H 0.196 0.804 39 H 0.178 0.822 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.128 0.872 45 H 0.034 0.966 46 H 0.109 0.891 47 H 0.052 0.948 48 H 0.020 0.980 49 H 0.020 0.980 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.364 -28.245 -4.567 28.644 hybrid contribution -1.495 1.313 0.330 2.017 sum -0.131 -26.932 -4.237 27.264 Atomic orbital electron populations 1.21835 0.92045 1.04311 1.02821 1.23159 0.96655 0.80279 1.02952 1.86103 1.18731 1.32143 1.88691 1.18867 0.83340 0.93478 0.97442 1.21829 0.94660 0.98449 1.04594 1.21395 0.94463 0.97654 0.95592 1.21557 1.00616 0.91218 1.00075 1.19638 0.93437 0.92660 1.05138 1.18879 0.83135 0.89095 0.75958 1.90857 1.60993 1.43654 1.51327 1.45828 1.05664 1.09758 1.73851 1.21176 0.95601 0.81726 0.96773 0.93759 1.22166 0.93256 0.97498 1.00734 1.22802 0.97962 0.94309 0.97627 0.87104 1.22916 0.94535 1.02299 0.94847 1.21892 0.93321 0.89797 0.91701 0.91958 1.22435 0.99252 0.98720 0.96009 1.44847 1.36479 1.47201 1.05376 1.19266 1.07470 1.14627 0.94486 0.91254 1.25488 1.02248 1.02694 0.95574 1.70153 1.44380 1.46110 0.99159 0.85330 0.79470 0.79159 0.76529 1.21888 1.21704 1.19674 1.21060 0.90872 0.94186 0.87539 1.20412 0.94572 0.95932 1.04142 0.92425 0.92348 0.87551 0.90165 0.90262 0.81692 0.80435 0.82209 0.74565 0.87181 0.91535 0.91811 0.87187 0.96640 0.89084 0.94802 0.98029 0.97999 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.04 0.57 5.46 71.98 0.39 0.96 16 3 O -0.34 -8.14 10.13 -92.55 -0.94 -9.08 16 4 C 0.11 2.77 6.68 22.47 0.15 2.92 16 5 C -0.18 -2.71 9.03 22.42 0.20 -2.51 16 6 C -0.07 -0.93 10.03 22.21 0.22 -0.71 16 7 C -0.12 -2.06 9.54 22.53 0.21 -1.84 16 8 C -0.11 -3.08 5.87 -20.10 -0.12 -3.20 16 9 C 0.54 20.54 7.74 86.79 0.67 21.21 16 10 O -0.59 -30.54 16.00 -3.90 -0.06 -30.60 16 11 N -0.70 -21.35 5.01 -443.03 -2.22 -23.57 16 12 C 0.15 5.70 2.09 45.49 0.09 5.79 16 13 H 0.04 2.36 5.36 -2.39 -0.01 2.35 16 14 C -0.10 -2.82 5.11 31.43 0.16 -2.66 16 15 C -0.11 -3.63 4.27 -9.05 -0.04 -3.67 16 16 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 17 C -0.11 -3.32 6.19 32.17 0.20 -3.12 16 18 C 0.14 5.72 4.30 45.79 0.20 5.92 16 19 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 20 C -0.12 -4.66 5.30 30.89 0.16 -4.49 16 21 N -0.61 -32.93 2.43 -664.46 -1.61 -34.55 16 22 C -0.23 -14.02 10.29 84.03 0.87 -13.15 16 23 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 24 C -0.07 -4.21 5.49 84.86 0.47 -3.74 16 25 N -0.95 -61.49 10.35 21.65 0.22 -61.26 16 26 Si 0.97 51.08 29.55 68.60 2.03 53.11 16 27 H -0.29 -15.61 7.11 99.48 0.71 -14.90 16 28 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 29 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 30 C 0.19 9.52 4.09 86.85 0.36 9.88 16 31 C -0.13 -4.15 9.53 22.63 0.22 -3.94 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 0.74 7.66 -2.38 -0.02 0.72 16 36 H 0.08 0.75 7.66 -2.39 -0.02 0.73 16 37 H 0.17 1.33 6.28 -2.91 -0.02 1.31 16 38 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 39 H 0.16 1.70 6.40 -2.91 -0.02 1.68 16 40 H 0.42 8.08 6.64 -92.70 -0.62 7.47 16 41 H 0.11 2.04 8.03 -2.38 -0.02 2.02 16 42 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.11 2.38 7.80 -2.39 -0.02 2.36 16 45 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.09 2.57 8.00 -2.39 -0.02 2.56 16 47 H 0.24 15.42 8.31 -92.71 -0.77 14.65 16 48 H 0.00 0.09 6.14 -2.39 -0.01 0.08 16 49 H 0.00 0.10 7.40 -2.39 -0.02 0.08 16 50 H 0.10 4.00 7.65 -2.91 -0.02 3.98 16 Total: -1.00 -91.37 390.41 2.91 -88.47 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.33 Total: 14.78 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 5.15 Total: 2.70 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -3.61 Total: -119.37 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.00 Total: -39.68 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.03 Total: 53.11 kcal Total: -91.37 2.91 -88.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047154979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.003 kcal (2) G-P(sol) polarization free energy of solvation -91.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds