Wall clock time and date at job start Wed Apr 1 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47284 * 2 1 4 4 C 1.35903 * 117.00115 * 180.02562 * 3 2 1 5 5 C 1.38858 * 119.98659 * 359.97438 * 4 3 2 6 6 C 1.38241 * 120.23850 * 180.02562 * 5 4 3 7 7 C 1.38007 * 120.20870 * 359.97438 * 6 5 4 8 8 C 1.39560 * 119.96748 * 359.97438 * 7 6 5 9 9 C 1.47859 * 120.11819 * 180.02562 * 8 7 6 10 10 O 1.21551 * 119.99713 * 185.60230 * 9 8 7 11 11 N 1.34777 * 119.99993 * 5.60047 * 9 8 7 12 12 C 1.46506 * 119.99690 * 184.71792 * 11 9 8 13 13 H 1.08997 * 109.32359 * 52.10922 * 12 11 9 14 14 C 1.53038 * 109.17971 * 292.55160 * 12 11 9 15 15 C 1.53968 * 108.82997 * 295.23983 * 14 12 11 16 16 H 1.09000 * 112.99408 * 168.09398 * 15 14 12 17 17 C 1.55424 * 106.41383 * 293.82463 * 15 14 12 18 18 C 1.55166 * 100.35867 * 73.37454 * 17 15 14 19 19 H 1.09000 * 113.05540 * 162.98842 * 18 17 15 20 20 C 1.52985 * 109.32194 * 171.75750 * 12 11 9 21 21 N 1.47786 * 104.25268 * 40.54706 * 18 17 15 22 22 C 1.36939 * 125.85579 * 153.57452 * 21 18 17 23 23 H 1.07992 * 120.00139 * 18.69199 * 22 21 18 24 24 C 1.38818 * 119.99890 * 198.68803 * 22 21 18 25 25 N 1.31615 * 119.99954 * 1.94573 * 24 22 21 26 26 Si 1.86803 * 119.99704 * 181.94061 * 24 22 21 27 27 H 1.48492 * 109.47225 * 5.29499 * 26 24 22 28 28 H 1.48504 * 109.46963 * 125.30134 * 26 24 22 29 29 H 1.48502 * 109.46938 * 245.29486 * 26 24 22 30 30 C 1.47085 * 108.29013 * 333.54548 * 21 18 17 31 31 C 1.38458 * 119.98693 * 180.25452 * 4 3 2 32 32 H 1.08998 * 109.47249 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47238 * 300.00573 * 1 2 3 34 34 H 1.09001 * 109.46993 * 59.99908 * 1 2 3 35 35 H 1.09000 * 109.47238 * 239.99427 * 2 1 3 36 36 H 1.08997 * 109.47055 * 119.99599 * 2 1 3 37 37 H 1.07996 * 119.87622 * 0.02562 * 5 4 3 38 38 H 1.08001 * 119.89498 * 179.97438 * 6 5 4 39 39 H 1.08003 * 120.01768 * 179.97438 * 7 6 5 40 40 H 0.96991 * 120.00021 * 4.71830 * 11 9 8 41 41 H 1.09002 * 109.57201 * 175.43494 * 14 12 11 42 42 H 1.09002 * 109.57530 * 55.04307 * 14 12 11 43 43 H 1.08999 * 111.23944 * 191.15513 * 17 15 14 44 44 H 1.09001 * 111.23673 * 315.59823 * 17 15 14 45 45 H 1.09002 * 109.53050 * 305.10882 * 20 12 11 46 46 H 1.08995 * 109.53231 * 184.88172 * 20 12 11 47 47 H 0.96999 * 119.99985 * 180.02562 * 25 24 22 48 48 H 1.09000 * 109.97460 * 241.73412 * 30 21 18 49 49 H 1.08995 * 109.97844 * 120.45076 * 30 21 18 50 50 H 1.08002 * 120.10368 * 0.02562 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1993 0.4239 -0.0005 6 6 5.5706 0.5990 -0.0005 7 6 6.1083 1.8700 -0.0011 8 6 5.2665 2.9831 -0.0022 9 6 5.8390 4.3463 -0.0034 10 8 5.1084 5.3124 0.0984 11 7 7.1710 4.5177 -0.1173 12 6 7.7481 5.8604 -0.0148 13 1 7.3940 6.3364 0.8995 14 6 7.3066 6.6910 -1.2220 15 6 7.9035 6.0695 -2.4979 16 1 7.4715 6.4766 -3.4121 17 6 9.4439 6.2493 -2.3948 18 6 9.7767 5.1887 -1.3121 19 1 10.8345 4.9276 -1.2814 20 6 9.2737 5.7538 0.0279 21 7 8.9202 4.0350 -1.6576 22 6 9.1806 2.7245 -1.3578 23 1 9.8925 2.4787 -0.5839 24 6 8.5292 1.7118 -2.0486 25 7 7.6902 2.0104 -3.0177 26 14 8.8438 -0.0748 -1.6029 27 1 9.7209 -0.1395 -0.4065 28 1 7.5525 -0.7459 -1.3071 29 1 9.5079 -0.7594 -2.7412 30 6 7.7397 4.5358 -2.3780 31 6 3.8827 2.8049 0.0048 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5139 -0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 3.7841 -0.5731 -0.0005 38 1 6.2231 -0.2616 -0.0001 39 1 7.1801 2.0032 -0.0007 40 1 7.7474 3.7522 -0.2672 41 1 7.6651 7.7144 -1.1119 42 1 6.2186 6.6882 -1.2889 43 1 9.9330 6.0152 -3.3403 44 1 9.7025 7.2529 -2.0570 45 1 9.5698 5.0878 0.8384 46 1 9.7036 6.7419 0.1912 47 1 7.2348 1.3028 -3.5002 48 1 6.8344 4.3006 -1.8184 49 1 7.6913 4.0878 -3.3705 50 1 3.2261 3.6624 0.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047154984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:17 Heat of formation + Delta-G solvation = 30.210143 kcal Electronic energy + Delta-G solvation = -32736.156180 eV Core-core repulsion = 28731.356800 eV Total energy + Delta-G solvation = -4004.799380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.83426 -39.76269 -38.09621 -36.63468 -33.69932 -33.25102 -31.92450 -30.99126 -30.70410 -30.14450 -29.13068 -27.71179 -25.27758 -24.33710 -23.19171 -22.69834 -21.96084 -21.22667 -19.81794 -19.48565 -18.69754 -18.16747 -16.96053 -16.18081 -16.02897 -15.76294 -15.47104 -15.22839 -14.84002 -14.56029 -14.19834 -13.81182 -13.48225 -13.25022 -13.14419 -13.04256 -12.68063 -12.52218 -12.46363 -12.27166 -11.91481 -11.81211 -11.70909 -11.63571 -11.63050 -11.45054 -11.24491 -10.93540 -10.89549 -10.64706 -10.59572 -10.51027 -10.10489 -9.90138 -9.71451 -9.59509 -9.38817 -8.99432 -8.79262 -8.57419 -7.83770 -7.45718 -6.86706 -5.87618 -3.37389 1.35164 1.88982 3.17588 3.28264 3.28764 3.30710 3.52187 4.12992 4.26734 4.45191 4.85151 4.89911 5.10543 5.16730 5.21732 5.23718 5.27820 5.33387 5.42300 5.49309 5.59515 5.65077 5.68562 5.80081 5.82707 5.85088 5.93380 5.93944 5.95939 6.04919 6.15304 6.19815 6.31448 6.32155 6.34870 6.47812 6.60984 6.65551 6.75602 6.85381 6.89533 6.92219 6.94793 6.99266 7.07096 7.45452 7.46712 7.62696 7.67789 7.81764 8.16519 8.62779 9.00064 9.19330 9.59047 10.32594 11.12026 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.004699 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.419261 B = 5956.886268 C = 7524.638961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.107 3.893 5 C -0.189 4.189 6 C -0.096 4.096 7 C -0.093 4.093 8 C -0.086 4.086 9 C 0.547 3.453 10 O -0.567 6.567 11 N -0.687 5.687 12 C 0.162 3.838 13 H 0.060 0.940 14 C -0.127 4.127 15 C -0.116 4.116 16 H 0.074 0.926 17 C -0.125 4.125 18 C 0.148 3.852 19 H 0.067 0.933 20 C -0.142 4.142 21 N -0.591 5.591 22 C -0.271 4.271 23 H 0.079 0.921 24 C 0.019 3.981 25 N -0.883 5.883 26 Si 0.882 3.118 27 H -0.275 1.275 28 H -0.275 1.275 29 H -0.288 1.288 30 C 0.133 3.867 31 C -0.097 4.097 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.436 0.564 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.256 0.744 48 H 0.061 0.939 49 H 0.064 0.936 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 -0.829 5.435 7.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.062 3.938 5 C -0.208 4.208 6 C -0.114 4.114 7 C -0.112 4.112 8 C -0.089 4.089 9 C 0.333 3.667 10 O -0.449 6.449 11 N -0.353 5.353 12 C 0.057 3.943 13 H 0.078 0.922 14 C -0.165 4.165 15 C -0.135 4.135 16 H 0.093 0.907 17 C -0.164 4.164 18 C 0.040 3.960 19 H 0.085 0.915 20 C -0.182 4.182 21 N -0.317 5.317 22 C -0.399 4.399 23 H 0.096 0.904 24 C -0.183 4.183 25 N -0.525 5.525 26 Si 0.711 3.289 27 H -0.200 1.200 28 H -0.202 1.202 29 H -0.215 1.215 30 C 0.009 3.991 31 C -0.117 4.117 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.165 0.835 40 H 0.292 0.708 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.584 -0.298 5.427 7.792 hybrid contribution 0.593 -1.663 -0.180 1.775 sum -4.990 -1.961 5.247 7.502 Atomic orbital electron populations 1.21762 0.93029 1.02526 1.03474 1.22712 0.95591 0.82549 1.01233 1.86044 1.19200 1.28637 1.89365 1.18691 0.81976 0.93832 0.99291 1.21280 0.94489 0.97551 1.07451 1.21021 0.94111 0.97713 0.98518 1.21698 1.01478 0.91396 0.96608 1.19757 0.92833 0.93837 1.02478 1.18168 0.83312 0.88028 0.77144 1.90646 1.60587 1.41373 1.52315 1.47529 1.07243 1.12170 1.68313 1.20627 0.92897 0.83585 0.97196 0.92236 1.22113 1.01803 0.97494 0.95079 1.22749 0.94900 0.99452 0.96430 0.90735 1.22938 0.96389 0.97795 0.99257 1.21649 0.94619 0.88161 0.91522 0.91514 1.22538 0.94341 1.00558 1.00740 1.44883 1.19611 1.01268 1.65960 1.19065 1.24595 0.80558 1.15675 0.90358 1.25052 0.99214 0.97538 0.96482 1.69915 1.28952 1.31081 1.22597 0.86634 0.78147 0.85857 0.78243 1.19976 1.20151 1.21507 1.22220 0.90954 0.87234 0.98713 1.20355 0.94171 0.94924 1.02260 0.90646 0.91617 0.91531 0.92197 0.92310 0.85978 0.85666 0.83547 0.70830 0.92565 0.90696 0.92134 0.92314 0.92109 0.91708 0.93262 0.92157 0.91773 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.05 0.63 5.46 37.16 0.20 0.83 16 3 O -0.32 -4.99 10.13 -19.43 -0.20 -5.19 16 4 C 0.11 1.87 6.68 -39.27 -0.26 1.61 16 5 C -0.19 -3.13 9.03 -39.35 -0.36 -3.48 16 6 C -0.10 -1.75 9.60 -39.66 -0.38 -2.13 16 7 C -0.09 -1.89 8.66 -39.17 -0.34 -2.23 16 8 C -0.09 -1.79 5.87 -104.99 -0.62 -2.41 16 9 C 0.55 11.94 5.89 -12.32 -0.07 11.86 16 10 O -0.57 -13.17 14.79 5.32 0.08 -13.09 16 11 N -0.69 -14.23 2.72 -54.73 -0.15 -14.38 16 12 C 0.16 3.00 2.77 -67.92 -0.19 2.81 16 13 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 14 C -0.13 -2.31 5.13 -26.21 -0.13 -2.44 16 15 C -0.12 -2.23 4.33 -87.93 -0.38 -2.61 16 16 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 17 C -0.13 -2.17 6.18 -24.30 -0.15 -2.32 16 18 C 0.15 2.77 4.30 -65.62 -0.28 2.49 16 19 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 20 C -0.14 -2.36 5.41 -26.28 -0.14 -2.51 16 21 N -0.59 -13.11 1.76 -161.37 -0.28 -13.39 16 22 C -0.27 -6.43 7.59 -15.06 -0.11 -6.54 16 23 H 0.08 1.82 7.83 -52.49 -0.41 1.41 16 24 C 0.02 0.45 3.86 -17.43 -0.07 0.38 16 25 N -0.88 -22.85 10.57 55.49 0.59 -22.26 16 26 Si 0.88 19.06 28.06 -169.99 -4.77 14.29 16 27 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 28 H -0.28 -5.67 5.45 56.52 0.31 -5.36 16 29 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 30 C 0.13 3.03 4.30 -2.82 -0.01 3.02 16 31 C -0.10 -1.90 9.53 -39.02 -0.37 -2.27 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 36 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 37 H 0.12 1.65 6.28 -52.49 -0.33 1.32 16 38 H 0.13 2.18 6.11 -52.49 -0.32 1.86 16 39 H 0.15 3.14 3.83 -52.48 -0.20 2.93 16 40 H 0.44 9.39 2.38 -40.82 -0.10 9.29 16 41 H 0.06 0.89 7.97 -51.93 -0.41 0.47 16 42 H 0.07 1.52 6.46 -51.93 -0.34 1.19 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 47 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 48 H 0.06 1.48 3.85 -59.24 -0.23 1.25 16 49 H 0.06 1.70 6.43 -51.93 -0.33 1.36 16 50 H 0.14 2.65 7.66 -52.49 -0.40 2.25 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -27.39 365.89 -9.80 -37.19 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -7.30 Total: 18.22 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -3.29 Total: -6.90 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.15 Total: -50.03 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.12 Total: -18.28 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.77 Total: 14.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.39 -9.80 -37.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047154984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.399 kcal (2) G-P(sol) polarization free energy of solvation -27.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds