Wall clock time and date at job start Wed Apr 1 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47671 * 2 1 4 4 C 1.35912 * 117.00647 * 179.97438 * 3 2 1 5 5 C 1.38854 * 119.97763 * 359.97438 * 4 3 2 6 6 C 1.38247 * 120.23428 * 179.97438 * 5 4 3 7 7 C 1.38004 * 120.20726 * 359.75942 * 6 5 4 8 8 C 1.39568 * 119.96646 * 0.53953 * 7 6 5 9 9 C 1.47856 * 120.11928 * 179.71795 * 8 7 6 10 10 O 1.21552 * 119.99788 * 227.98204 * 9 8 7 11 11 N 1.34770 * 119.99911 * 47.98093 * 9 8 7 12 12 C 1.45230 * 116.99710 * 166.67530 * 11 9 8 13 13 C 1.53050 * 109.24282 * 218.44517 * 12 11 9 14 14 C 1.52935 * 108.49504 * 306.24781 * 13 12 11 15 15 C 1.52923 * 109.79811 * 65.99366 * 14 13 12 16 16 H 1.08998 * 111.27109 * 66.64256 * 15 14 13 17 17 C 1.44195 * 117.76443 * 345.96355 * 11 9 8 18 18 H 1.09002 * 109.21894 * 27.34800 * 17 11 9 19 19 C 1.54064 * 111.76438 * 266.44736 * 17 11 9 20 20 C 1.54053 * 103.74035 * 207.39821 * 19 17 11 21 21 N 1.46889 * 107.71094 * 17.13399 * 20 19 17 22 22 C 1.36928 * 125.58283 * 182.95957 * 21 20 19 23 23 H 1.08008 * 120.00057 * 180.02562 * 22 21 20 24 24 C 1.38818 * 120.00332 * 0.02623 * 22 21 20 25 25 N 1.31616 * 119.99282 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00031 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47023 * 179.97438 * 26 24 22 28 28 H 1.48493 * 109.47416 * 300.00212 * 26 24 22 29 29 H 1.48500 * 109.46848 * 60.00541 * 26 24 22 30 30 C 1.38451 * 119.98830 * 179.97438 * 4 3 2 31 31 H 1.08993 * 109.47546 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47002 * 300.00329 * 1 2 3 33 33 H 1.09001 * 109.46656 * 59.99851 * 1 2 3 34 34 H 1.09001 * 109.47316 * 239.99227 * 2 1 3 35 35 H 1.09002 * 109.46939 * 119.99682 * 2 1 3 36 36 H 1.08000 * 119.88446 * 359.97438 * 5 4 3 37 37 H 1.08002 * 119.89678 * 180.02562 * 6 5 4 38 38 H 1.08007 * 120.01718 * 180.27693 * 7 6 5 39 39 H 1.08995 * 109.56556 * 98.54042 * 12 11 9 40 40 H 1.09003 * 109.64765 * 338.39500 * 12 11 9 41 41 H 1.09002 * 109.63286 * 186.54323 * 13 12 11 42 42 H 1.09001 * 109.79977 * 66.04929 * 13 12 11 43 43 H 1.09002 * 109.41910 * 305.89377 * 14 13 12 44 44 H 1.09004 * 109.36530 * 186.05909 * 14 13 12 45 45 H 1.08996 * 110.56789 * 88.83961 * 19 17 11 46 46 H 1.09000 * 110.69672 * 326.02448 * 19 17 11 47 47 H 1.08999 * 109.81194 * 257.58224 * 20 19 17 48 48 H 1.09001 * 109.81200 * 136.68516 * 20 19 17 49 49 H 0.97004 * 119.99072 * 179.97438 * 25 24 22 50 50 H 1.07994 * 120.09961 * 359.97438 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3539 1.5253 0.0005 5 6 4.1993 0.4238 0.0016 6 6 5.5706 0.5988 0.0016 7 6 6.1084 1.8697 -0.0044 8 6 5.2666 2.9830 0.0008 9 6 5.8391 4.3462 0.0007 10 8 5.4280 5.1781 0.7858 11 7 6.8168 4.6663 -0.8699 12 6 7.1257 6.0769 -1.0250 13 6 7.4247 6.3689 -2.4973 14 6 8.5171 5.4087 -2.9702 15 6 7.9875 3.9742 -2.9560 16 1 7.2014 3.8355 -3.6982 17 6 7.4819 3.5884 -1.5592 18 1 6.8011 2.7411 -1.6417 19 6 8.7591 3.1412 -0.8227 20 6 9.6503 2.5770 -1.9454 21 7 9.1209 3.0668 -3.2251 22 6 9.6032 2.7402 -4.4643 23 1 9.1435 3.1548 -5.3492 24 6 10.6831 1.8760 -4.5832 25 7 11.2437 1.3711 -3.5047 26 14 11.3406 1.4299 -6.2738 27 1 12.4884 0.4988 -6.1286 28 1 10.2682 0.7749 -7.0650 29 1 11.7885 2.6619 -6.9715 30 6 3.8828 2.8048 0.0000 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5140 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.7841 -0.5732 0.0024 37 1 6.2232 -0.2618 0.0020 38 1 7.1802 2.0029 -0.0089 39 1 7.9972 6.3283 -0.4207 40 1 6.2745 6.6761 -0.7016 41 1 7.7696 7.3973 -2.6040 42 1 6.5241 6.2211 -3.0933 43 1 9.3780 5.4838 -2.3059 44 1 8.8175 5.6740 -3.9839 45 1 8.5281 2.3668 -0.0914 46 1 9.2428 3.9905 -0.3400 47 1 9.6225 1.4875 -1.9269 48 1 10.6753 2.9234 -1.8128 49 1 11.9980 0.7670 -3.5879 50 1 3.2262 3.6622 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049754442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:59 Heat of formation + Delta-G solvation = 0.764750 kcal Electronic energy + Delta-G solvation = -31331.570485 eV Core-core repulsion = 27325.494256 eV Total energy + Delta-G solvation = -4006.076228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.02704 -39.89913 -38.15186 -37.30853 -35.10166 -33.32631 -32.19592 -32.13975 -31.07968 -29.64581 -29.07633 -28.33011 -25.31467 -24.58838 -24.06343 -22.79628 -22.33739 -21.72860 -20.65305 -19.97886 -18.81963 -17.76918 -17.09628 -16.78674 -16.35455 -16.31673 -15.78400 -15.63156 -15.00694 -14.71729 -14.46532 -14.13449 -13.83420 -13.65705 -13.55385 -13.48153 -13.27420 -13.04859 -12.77833 -12.49254 -12.38936 -12.25191 -12.05909 -11.94009 -11.82055 -11.21114 -11.09403 -11.00300 -10.97103 -10.85132 -10.75730 -10.69146 -10.44820 -10.15870 -10.10487 -9.87666 -9.67876 -9.56608 -9.03086 -8.65097 -8.34363 -8.22011 -6.92521 -5.77092 -3.11431 0.94275 1.37747 2.68078 2.96295 3.26832 3.37145 3.42145 3.42662 3.72698 4.40021 4.52174 4.62535 4.63218 4.80952 4.88669 4.97316 5.06741 5.07858 5.17195 5.23701 5.26740 5.30120 5.37889 5.46307 5.48030 5.48231 5.53459 5.59788 5.70823 5.72297 5.85577 5.87486 6.00662 6.09146 6.15859 6.17785 6.19853 6.29687 6.31798 6.38185 6.46133 6.51246 6.61658 6.73936 6.91184 6.99856 7.26735 7.49667 7.50333 7.54968 7.75409 8.17966 8.25399 9.15347 9.74917 10.39206 11.33905 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011022 B = 0.003408 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.702616 B = 8213.376493 C = 9762.105780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.316 6.316 4 C 0.121 3.879 5 C -0.190 4.190 6 C -0.082 4.082 7 C -0.140 4.140 8 C -0.087 4.087 9 C 0.555 3.445 10 O -0.539 6.539 11 N -0.580 5.580 12 C 0.119 3.881 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.162 3.838 16 H 0.057 0.943 17 C 0.116 3.884 18 H 0.102 0.898 19 C -0.164 4.164 20 C 0.180 3.820 21 N -0.595 5.595 22 C -0.227 4.227 23 H 0.078 0.922 24 C -0.005 4.005 25 N -0.921 5.921 26 Si 0.912 3.088 27 H -0.290 1.290 28 H -0.285 1.285 29 H -0.285 1.285 30 C -0.104 4.104 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.154 0.846 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.042 0.958 49 H 0.253 0.747 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.213 -0.693 7.433 16.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.230 6.230 4 C 0.076 3.924 5 C -0.209 4.209 6 C -0.100 4.100 7 C -0.158 4.158 8 C -0.090 4.090 9 C 0.343 3.657 10 O -0.417 6.417 11 N -0.310 5.310 12 C -0.003 4.003 13 C -0.171 4.171 14 C -0.170 4.170 15 C 0.053 3.947 16 H 0.075 0.925 17 C 0.011 3.989 18 H 0.120 0.880 19 C -0.203 4.203 20 C 0.055 3.945 21 N -0.320 5.320 22 C -0.356 4.356 23 H 0.096 0.904 24 C -0.202 4.202 25 N -0.568 5.568 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.211 1.211 29 H -0.212 1.212 30 C -0.124 4.124 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.351 -0.259 7.705 17.179 hybrid contribution 0.651 -0.598 -0.930 1.283 sum -14.700 -0.857 6.776 16.209 Atomic orbital electron populations 1.21773 0.92761 1.02804 1.03568 1.22787 0.95859 0.82027 1.01482 1.86068 1.18834 1.29248 1.88888 1.18725 0.82379 0.93706 0.97636 1.21391 0.94508 0.97967 1.07070 1.20952 0.94233 0.97418 0.97375 1.22143 1.01968 0.91646 1.00068 1.19668 0.93243 0.93621 1.02480 1.18436 0.79368 0.87224 0.80664 1.90751 1.62236 1.50827 1.37885 1.46865 1.35163 1.07176 1.41832 1.21242 1.01441 0.80571 0.97081 1.21869 1.00221 0.99952 0.95040 1.22101 0.97424 0.95873 1.01615 1.20955 0.91198 0.90179 0.92368 0.92548 1.21765 0.94637 0.88837 0.93637 0.88017 1.23313 0.96826 1.00452 0.99678 1.21059 0.94081 0.97946 0.81369 1.44481 1.33238 1.51625 1.02622 1.18964 1.10901 1.22768 0.82922 0.90447 1.24779 0.98426 0.99669 0.97284 1.69938 1.25352 1.35442 1.26095 0.86207 0.78290 0.77956 0.83339 1.21627 1.21147 1.21198 1.20248 0.93512 0.95293 1.03318 0.90394 0.91530 0.91467 0.91900 0.92019 0.85312 0.84880 0.82900 0.92069 0.89742 0.91094 0.91752 0.91921 0.91790 0.91301 0.91710 0.92746 0.94000 0.93656 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.44 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.79 10.13 -19.46 -0.20 -3.99 16 4 C 0.12 1.58 6.68 -39.28 -0.26 1.31 16 5 C -0.19 -2.23 9.03 -39.35 -0.36 -2.58 16 6 C -0.08 -1.02 10.03 -39.66 -0.40 -1.41 16 7 C -0.14 -2.00 7.33 -39.17 -0.29 -2.29 16 8 C -0.09 -1.33 5.11 -104.99 -0.54 -1.87 16 9 C 0.56 9.31 7.09 -12.33 -0.09 9.22 16 10 O -0.54 -10.22 16.35 5.32 0.09 -10.13 16 11 N -0.58 -9.29 2.78 -168.92 -0.47 -9.76 16 12 C 0.12 1.74 6.12 -4.70 -0.03 1.71 16 13 C -0.13 -1.84 6.09 -26.74 -0.16 -2.00 16 14 C -0.13 -2.25 5.31 -26.80 -0.14 -2.40 16 15 C 0.16 3.11 3.29 -67.09 -0.22 2.89 16 16 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 17 C 0.12 1.97 2.27 -68.35 -0.16 1.82 16 18 H 0.10 1.75 4.62 -51.93 -0.24 1.51 16 19 C -0.16 -2.89 5.96 -25.63 -0.15 -3.05 16 20 C 0.18 4.06 5.39 -3.28 -0.02 4.04 16 21 N -0.60 -14.01 2.93 -163.60 -0.48 -14.49 16 22 C -0.23 -5.96 10.27 -15.06 -0.15 -6.12 16 23 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 24 C -0.01 -0.14 5.49 -17.43 -0.10 -0.23 16 25 N -0.92 -25.74 10.29 55.49 0.57 -25.17 16 26 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 30 C -0.10 -1.51 9.66 -39.02 -0.38 -1.89 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 35 H 0.06 0.44 7.65 -51.93 -0.40 0.05 16 36 H 0.13 1.16 6.28 -52.49 -0.33 0.83 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.15 2.22 3.20 -52.48 -0.17 2.06 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.21 7.14 -51.93 -0.37 0.84 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.16 8.01 -51.93 -0.42 0.75 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.07 1.09 5.50 -51.93 -0.29 0.80 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.05 1.35 7.25 -51.93 -0.38 0.97 16 48 H 0.04 1.06 7.60 -51.93 -0.39 0.66 16 49 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -30.37 384.66 -10.14 -40.50 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.57 Total: 3.70 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.85 Total: -2.78 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.38 Total: -49.42 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.11 Total: -14.12 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.37 -10.14 -40.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049754442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.269 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds