Wall clock time and date at job start Wed Apr 1 2020 02:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47511 * 2 1 4 4 C 1.35653 * 117.00222 * 180.02562 * 3 2 1 5 5 C 1.38712 * 120.15012 * 0.25081 * 4 3 2 6 6 C 1.38053 * 120.08126 * 180.27778 * 5 4 3 7 7 C 1.38543 * 120.39246 * 359.74903 * 6 5 4 8 8 C 1.37782 * 120.30173 * 359.97093 * 7 6 5 9 9 C 1.39707 * 119.90823 * 0.02859 * 8 7 6 10 10 C 1.47538 * 120.19297 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00261 * 133.40856 * 10 9 8 12 12 N 1.34773 * 120.00001 * 313.40606 * 10 9 8 13 13 C 1.47861 * 122.22755 * 354.68879 * 12 10 9 14 14 C 1.52714 * 111.06694 * 232.50216 * 13 12 10 15 15 C 1.53872 * 111.52274 * 311.47457 * 14 13 12 16 16 C 1.51076 * 107.40265 * 56.88636 * 15 14 13 17 17 H 1.08996 * 108.73680 * 51.49461 * 16 15 14 18 18 C 1.45729 * 122.23272 * 174.71295 * 12 10 9 19 19 H 1.09000 * 111.07172 * 240.50875 * 18 12 10 20 20 C 1.53434 * 116.36306 * 9.01049 * 18 12 10 21 21 C 1.55476 * 101.66623 * 152.71857 * 20 18 12 22 22 N 1.45440 * 120.14093 * 175.82156 * 16 15 14 23 23 C 1.36933 * 126.05717 * 331.09036 * 22 16 15 24 24 H 1.08003 * 120.00131 * 359.05368 * 23 22 16 25 25 C 1.38812 * 120.00260 * 179.05237 * 23 22 16 26 26 N 1.31618 * 119.99929 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00292 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46883 * 59.99772 * 27 25 23 29 29 H 1.48492 * 109.47041 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.46894 * 299.99935 * 27 25 23 31 31 H 1.09003 * 109.46651 * 299.99513 * 1 2 3 32 32 H 1.08994 * 109.47394 * 59.99635 * 1 2 3 33 33 H 1.08995 * 109.47352 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.46738 * 239.99754 * 2 1 3 35 35 H 1.08994 * 109.47394 * 120.00365 * 2 1 3 36 36 H 1.07996 * 119.95714 * 0.02562 * 5 4 3 37 37 H 1.08004 * 119.80090 * 179.76705 * 6 5 4 38 38 H 1.08000 * 119.85146 * 180.02562 * 7 6 5 39 39 H 1.08006 * 120.04909 * 180.02562 * 8 7 6 40 40 H 1.09006 * 109.15838 * 112.09212 * 13 12 10 41 41 H 1.09000 * 109.15911 * 352.91304 * 13 12 10 42 42 H 1.08994 * 109.06934 * 190.94807 * 14 13 12 43 43 H 1.08995 * 109.01240 * 71.96407 * 14 13 12 44 44 H 1.08997 * 109.88209 * 176.38480 * 15 14 13 45 45 H 1.09001 * 109.88363 * 297.39133 * 15 14 13 46 46 H 1.08995 * 110.99025 * 270.80973 * 20 18 12 47 47 H 1.08993 * 110.99087 * 34.62652 * 20 18 12 48 48 H 1.08995 * 109.96212 * 96.78393 * 21 20 18 49 49 H 1.09001 * 109.95763 * 217.98182 * 21 20 18 50 50 H 0.96992 * 120.00230 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3513 1.5249 -0.0005 5 6 4.1991 0.4271 -0.0063 6 6 5.5675 0.6095 -0.0011 7 6 6.1043 1.8867 0.0047 8 6 5.2770 2.9885 0.0047 9 6 3.8904 2.8185 -0.0005 10 6 2.9986 3.9939 0.0000 11 8 2.0573 4.0433 -0.7681 12 7 3.2274 5.0129 0.8518 13 6 4.2852 4.9559 1.8834 14 6 3.7232 5.2851 3.2647 15 6 2.8672 6.5634 3.2359 16 6 1.7740 6.3522 2.2147 17 1 1.2720 5.4088 2.4292 18 6 2.4484 6.2440 0.8180 19 1 3.0854 7.1054 0.6173 20 6 1.2137 6.2443 -0.0928 21 6 0.3024 7.2875 0.6131 22 7 0.7445 7.3624 2.0275 23 6 0.2849 8.2312 2.9809 24 1 0.6832 8.1921 3.9841 25 6 -0.6928 9.1622 2.6581 26 7 -1.1785 9.2095 1.4357 27 14 -1.3192 10.3479 3.9586 28 1 -0.1910 11.1721 4.4615 29 1 -2.3524 11.2336 3.3643 30 1 -1.9118 9.5807 5.0835 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.7881 -0.5716 -0.0108 37 1 6.2234 -0.2485 -0.0018 38 1 7.1761 2.0193 0.0084 39 1 5.6999 3.9824 0.0089 40 1 5.0666 5.6741 1.6346 41 1 4.7140 3.9540 1.9011 42 1 4.5498 5.4257 3.9612 43 1 3.1083 4.4523 3.6055 44 1 2.4283 6.7378 4.2182 45 1 3.4831 7.4157 2.9487 46 1 1.4719 6.5699 -1.1004 47 1 0.7415 5.2621 -0.1106 48 1 0.4134 8.2615 0.1365 49 1 -0.7380 6.9662 0.5644 50 1 -1.8619 9.8597 1.2103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049876837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:08 Heat of formation + Delta-G solvation = -2.409435 kcal Electronic energy + Delta-G solvation = -31660.951410 eV Core-core repulsion = 27654.737538 eV Total energy + Delta-G solvation = -4006.213871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.82653 -39.69727 -37.80925 -37.24106 -35.31070 -32.52901 -32.41524 -32.06733 -31.10907 -29.76040 -28.72329 -28.12342 -25.08394 -24.39002 -24.25078 -22.95242 -21.88087 -21.35233 -20.82928 -19.66567 -19.22733 -18.08285 -16.92025 -16.38591 -16.29196 -16.12369 -15.43208 -15.23999 -14.92233 -14.65369 -14.51089 -14.09032 -14.02061 -13.66501 -13.60240 -13.39980 -13.13628 -12.75582 -12.75285 -12.36794 -12.22463 -12.15760 -12.10014 -11.81536 -11.72475 -11.48324 -11.17618 -11.06785 -10.92978 -10.78871 -10.63860 -10.46062 -10.37333 -10.05694 -9.90534 -9.75051 -9.55027 -9.21246 -8.83845 -8.50411 -8.37774 -8.10551 -6.74626 -5.62864 -2.96768 0.84356 1.19566 2.95164 3.01152 3.22403 3.44729 3.48783 3.50377 3.65014 4.44006 4.54873 4.57160 4.71089 4.73031 4.82485 4.91621 4.98555 5.03531 5.08141 5.18981 5.24838 5.35195 5.44711 5.49729 5.52295 5.57106 5.65788 5.68215 5.74286 5.85110 5.91980 5.95070 6.02419 6.05006 6.08337 6.17272 6.21071 6.35010 6.37442 6.48578 6.49425 6.64888 6.80807 6.88400 7.00247 7.23610 7.31551 7.65362 7.74875 7.81467 7.92234 8.32768 8.56658 9.26879 9.90447 10.59011 11.48990 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.003215 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.724942 B = 8708.118113 C = 9581.192633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.292 6.292 4 C 0.178 3.822 5 C -0.218 4.218 6 C -0.063 4.063 7 C -0.167 4.167 8 C -0.051 4.051 9 C -0.158 4.158 10 C 0.567 3.433 11 O -0.514 6.514 12 N -0.596 5.596 13 C 0.107 3.893 14 C -0.128 4.128 15 C -0.114 4.114 16 C 0.158 3.842 17 H 0.018 0.982 18 C 0.119 3.881 19 H 0.078 0.922 20 C -0.135 4.135 21 C 0.175 3.825 22 N -0.593 5.593 23 C -0.226 4.226 24 H 0.077 0.923 25 C -0.008 4.008 26 N -0.920 5.920 27 Si 0.909 3.091 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.090 0.910 48 H 0.054 0.946 49 H 0.039 0.961 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.404 -19.586 -1.810 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.204 6.204 4 C 0.130 3.870 5 C -0.237 4.237 6 C -0.081 4.081 7 C -0.185 4.185 8 C -0.069 4.069 9 C -0.162 4.162 10 C 0.355 3.645 11 O -0.390 6.390 12 N -0.329 5.329 13 C -0.016 4.016 14 C -0.167 4.167 15 C -0.153 4.153 16 C 0.049 3.951 17 H 0.035 0.965 18 C 0.015 3.985 19 H 0.096 0.904 20 C -0.173 4.173 21 C 0.051 3.949 22 N -0.318 5.318 23 C -0.354 4.354 24 H 0.095 0.905 25 C -0.204 4.204 26 N -0.568 5.568 27 Si 0.740 3.260 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.108 0.892 48 H 0.072 0.928 49 H 0.057 0.943 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.507 -19.244 -2.233 24.203 hybrid contribution -0.132 0.424 0.758 0.879 sum 14.375 -18.820 -1.475 23.728 Atomic orbital electron populations 1.21767 0.92395 1.02593 1.04261 1.22849 0.96445 0.81813 1.01055 1.86259 1.18102 1.29092 1.86958 1.18946 0.83004 0.92583 0.92425 1.21205 0.94379 0.97877 1.10259 1.21052 0.94193 0.97452 0.95410 1.20961 0.99990 0.92150 1.05442 1.21198 0.90926 0.99741 0.95062 1.19430 0.93982 0.91718 1.11092 1.17921 0.84182 0.81691 0.80751 1.90785 1.29041 1.78981 1.40202 1.47886 1.35832 1.16339 1.32857 1.21852 0.89723 1.02032 0.87979 1.21892 0.99961 0.99110 0.95768 1.21405 0.97030 0.96195 1.00676 1.20827 0.89174 0.93176 0.91966 0.96453 1.22389 0.92589 0.84078 0.99482 0.90434 1.23054 0.95042 1.02147 0.97087 1.21711 0.94981 0.95605 0.82625 1.44217 1.40427 1.38920 1.08276 1.18958 1.16742 1.09164 0.90553 0.90492 1.24798 0.99424 0.99537 0.96662 1.69940 1.31423 1.37926 1.17467 0.86240 0.78298 0.80850 0.80608 1.21249 1.21660 1.21267 0.91259 0.91117 0.90470 0.92024 0.92103 0.85076 0.85558 0.85383 0.84758 0.91659 0.90017 0.90947 0.91910 0.91533 0.91819 0.92306 0.89211 0.92771 0.94268 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.05 0.53 5.46 37.16 0.20 0.73 16 3 O -0.29 -4.30 9.12 -29.97 -0.27 -4.57 16 4 C 0.18 2.40 6.67 -38.69 -0.26 2.14 16 5 C -0.22 -2.17 9.03 -39.47 -0.36 -2.52 16 6 C -0.06 -0.52 10.03 -39.54 -0.40 -0.92 16 7 C -0.17 -1.43 10.02 -39.64 -0.40 -1.83 16 8 C -0.05 -0.54 7.55 -39.20 -0.30 -0.84 16 9 C -0.16 -2.25 4.97 -104.84 -0.52 -2.77 16 10 C 0.57 10.06 7.01 -12.47 -0.09 9.98 16 11 O -0.51 -10.98 13.14 -6.02 -0.08 -11.06 16 12 N -0.60 -10.01 2.92 -165.21 -0.48 -10.49 16 13 C 0.11 1.37 5.17 -3.44 -0.02 1.35 16 14 C -0.13 -1.73 5.93 -26.42 -0.16 -1.89 16 15 C -0.11 -2.02 5.50 -27.25 -0.15 -2.17 16 16 C 0.16 3.43 2.60 -68.15 -0.18 3.25 16 17 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 18 C 0.12 2.37 3.29 -66.80 -0.22 2.15 16 19 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 20 C -0.13 -3.02 5.16 -25.19 -0.13 -3.15 16 21 C 0.18 4.58 5.48 -1.69 -0.01 4.57 16 22 N -0.59 -15.68 3.36 -163.00 -0.55 -16.23 16 23 C -0.23 -6.37 9.95 -15.06 -0.15 -6.52 16 24 H 0.08 2.07 7.36 -52.48 -0.39 1.69 16 25 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 26 N -0.92 -27.77 10.46 55.49 0.58 -27.19 16 27 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.51 7.65 -51.92 -0.40 0.11 16 35 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 36 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 37 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 1.25 7.21 -52.48 -0.38 0.88 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.90 5.25 -51.93 -0.27 0.63 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.22 7.74 -51.93 -0.40 0.82 16 45 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.09 2.14 5.97 -51.93 -0.31 1.83 16 48 H 0.05 1.53 7.19 -51.93 -0.37 1.16 16 49 H 0.04 1.12 7.81 -51.93 -0.41 0.72 16 50 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -34.61 385.35 -10.71 -45.31 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.86 Total: 0.80 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -2.83 Total: 0.18 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.45 Total: -53.91 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.35 Total: -15.63 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.61 -10.71 -45.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.905 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds