Wall clock time and date at job start Wed Apr 1 2020 02:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47511 * 2 1 4 4 C 1.35653 * 117.00222 * 180.02562 * 3 2 1 5 5 C 1.38712 * 120.15012 * 0.25081 * 4 3 2 6 6 C 1.38053 * 120.08126 * 180.27778 * 5 4 3 7 7 C 1.38543 * 120.39246 * 359.74903 * 6 5 4 8 8 C 1.37782 * 120.30173 * 359.97093 * 7 6 5 9 9 C 1.39707 * 119.90823 * 0.02859 * 8 7 6 10 10 C 1.47538 * 120.19297 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00261 * 133.40856 * 10 9 8 12 12 N 1.34773 * 120.00001 * 313.40606 * 10 9 8 13 13 C 1.47861 * 122.22755 * 354.68879 * 12 10 9 14 14 C 1.52714 * 111.06694 * 232.50216 * 13 12 10 15 15 C 1.53872 * 111.52274 * 311.47457 * 14 13 12 16 16 C 1.51076 * 107.40265 * 56.88636 * 15 14 13 17 17 H 1.08996 * 108.73680 * 51.49461 * 16 15 14 18 18 C 1.45729 * 122.23272 * 174.71295 * 12 10 9 19 19 H 1.09000 * 111.07172 * 240.50875 * 18 12 10 20 20 C 1.53434 * 116.36306 * 9.01049 * 18 12 10 21 21 C 1.55476 * 101.66623 * 152.71857 * 20 18 12 22 22 N 1.45440 * 120.14093 * 175.82156 * 16 15 14 23 23 C 1.36933 * 126.05717 * 331.09036 * 22 16 15 24 24 H 1.08003 * 120.00131 * 359.05368 * 23 22 16 25 25 C 1.38812 * 120.00260 * 179.05237 * 23 22 16 26 26 N 1.31618 * 119.99929 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00292 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46883 * 59.99772 * 27 25 23 29 29 H 1.48492 * 109.47041 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.46894 * 299.99935 * 27 25 23 31 31 H 1.09003 * 109.46651 * 299.99513 * 1 2 3 32 32 H 1.08994 * 109.47394 * 59.99635 * 1 2 3 33 33 H 1.08995 * 109.47352 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.46738 * 239.99754 * 2 1 3 35 35 H 1.08994 * 109.47394 * 120.00365 * 2 1 3 36 36 H 1.07996 * 119.95714 * 0.02562 * 5 4 3 37 37 H 1.08004 * 119.80090 * 179.76705 * 6 5 4 38 38 H 1.08000 * 119.85146 * 180.02562 * 7 6 5 39 39 H 1.08006 * 120.04909 * 180.02562 * 8 7 6 40 40 H 1.09006 * 109.15838 * 112.09212 * 13 12 10 41 41 H 1.09000 * 109.15911 * 352.91304 * 13 12 10 42 42 H 1.08994 * 109.06934 * 190.94807 * 14 13 12 43 43 H 1.08995 * 109.01240 * 71.96407 * 14 13 12 44 44 H 1.08997 * 109.88209 * 176.38480 * 15 14 13 45 45 H 1.09001 * 109.88363 * 297.39133 * 15 14 13 46 46 H 1.08995 * 110.99025 * 270.80973 * 20 18 12 47 47 H 1.08993 * 110.99087 * 34.62652 * 20 18 12 48 48 H 1.08995 * 109.96212 * 96.78393 * 21 20 18 49 49 H 1.09001 * 109.95763 * 217.98182 * 21 20 18 50 50 H 0.96992 * 120.00230 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3513 1.5249 -0.0005 5 6 4.1991 0.4271 -0.0063 6 6 5.5675 0.6095 -0.0011 7 6 6.1043 1.8867 0.0047 8 6 5.2770 2.9885 0.0047 9 6 3.8904 2.8185 -0.0005 10 6 2.9986 3.9939 0.0000 11 8 2.0573 4.0433 -0.7681 12 7 3.2274 5.0129 0.8518 13 6 4.2852 4.9559 1.8834 14 6 3.7232 5.2851 3.2647 15 6 2.8672 6.5634 3.2359 16 6 1.7740 6.3522 2.2147 17 1 1.2720 5.4088 2.4292 18 6 2.4484 6.2440 0.8180 19 1 3.0854 7.1054 0.6173 20 6 1.2137 6.2443 -0.0928 21 6 0.3024 7.2875 0.6131 22 7 0.7445 7.3624 2.0275 23 6 0.2849 8.2312 2.9809 24 1 0.6832 8.1921 3.9841 25 6 -0.6928 9.1622 2.6581 26 7 -1.1785 9.2095 1.4357 27 14 -1.3192 10.3479 3.9586 28 1 -0.1910 11.1721 4.4615 29 1 -2.3524 11.2336 3.3643 30 1 -1.9118 9.5807 5.0835 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.7881 -0.5716 -0.0108 37 1 6.2234 -0.2485 -0.0018 38 1 7.1761 2.0193 0.0084 39 1 5.6999 3.9824 0.0089 40 1 5.0666 5.6741 1.6346 41 1 4.7140 3.9540 1.9011 42 1 4.5498 5.4257 3.9612 43 1 3.1083 4.4523 3.6055 44 1 2.4283 6.7378 4.2182 45 1 3.4831 7.4157 2.9487 46 1 1.4719 6.5699 -1.1004 47 1 0.7415 5.2621 -0.1106 48 1 0.4134 8.2615 0.1365 49 1 -0.7380 6.9662 0.5644 50 1 -1.8619 9.8597 1.2103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049876837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:07 Heat of formation + Delta-G solvation = -23.543072 kcal Electronic energy + Delta-G solvation = -31661.867833 eV Core-core repulsion = 27654.737538 eV Total energy + Delta-G solvation = -4007.130295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.97695 -40.88327 -39.10325 -38.32011 -36.90662 -34.31538 -33.90302 -32.95231 -32.18918 -30.78725 -30.36278 -29.69367 -26.57208 -26.24320 -25.05458 -24.08783 -22.93779 -22.59108 -22.34690 -21.43162 -20.50572 -19.01238 -18.62062 -17.67574 -17.31336 -17.14530 -16.90860 -16.65396 -16.30933 -15.93009 -15.72536 -15.55210 -15.40969 -14.96434 -14.81875 -14.42080 -14.31257 -14.23643 -14.00244 -13.84059 -13.44510 -13.42961 -13.18922 -13.01638 -12.87414 -12.82268 -12.68345 -12.56150 -12.26008 -12.14788 -12.03197 -11.87714 -11.79146 -11.72158 -11.68378 -11.57280 -11.44536 -10.76811 -10.36351 -9.91554 -9.55877 -9.19550 -8.92285 -7.83987 -5.21659 0.02711 0.44411 1.44611 1.49191 1.55349 1.74217 1.99504 2.23654 2.50359 2.79489 3.30338 3.33963 3.54114 3.83294 3.88503 3.96661 3.99337 4.00173 4.04347 4.06802 4.19091 4.23398 4.27183 4.31946 4.34007 4.44473 4.52457 4.55069 4.57039 4.64140 4.77163 4.79372 4.86050 4.88298 4.92597 5.01616 5.07815 5.12155 5.15215 5.25482 5.27970 5.37759 5.42380 5.47272 5.51190 5.57450 5.61201 5.73076 5.83150 6.16762 6.40977 6.54811 7.04469 7.23803 7.74427 8.44564 9.27676 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.003215 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.724942 B = 8708.118113 C = 9581.192633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 O -0.335 6.335 4 C 0.152 3.848 5 C -0.217 4.217 6 C -0.051 4.051 7 C -0.156 4.156 8 C -0.051 4.051 9 C -0.190 4.190 10 C 0.560 3.440 11 O -0.567 6.567 12 N -0.597 5.597 13 C 0.102 3.898 14 C -0.119 4.119 15 C -0.109 4.109 16 C 0.154 3.846 17 H -0.012 1.012 18 C 0.133 3.867 19 H 0.086 0.914 20 C -0.118 4.118 21 C 0.187 3.813 22 N -0.612 5.612 23 C -0.237 4.237 24 H 0.089 0.911 25 C -0.070 4.070 26 N -0.956 5.956 27 Si 0.982 3.018 28 H -0.271 1.271 29 H -0.297 1.297 30 H -0.278 1.278 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.027 0.973 49 H -0.003 1.003 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.992 -21.713 -0.161 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.249 6.249 4 C 0.105 3.895 5 C -0.236 4.236 6 C -0.069 4.069 7 C -0.174 4.174 8 C -0.069 4.069 9 C -0.194 4.194 10 C 0.351 3.649 11 O -0.447 6.447 12 N -0.329 5.329 13 C -0.018 4.018 14 C -0.158 4.158 15 C -0.147 4.147 16 C 0.046 3.954 17 H 0.006 0.994 18 C 0.028 3.972 19 H 0.103 0.897 20 C -0.157 4.157 21 C 0.062 3.938 22 N -0.337 5.337 23 C -0.365 4.365 24 H 0.107 0.893 25 C -0.263 4.263 26 N -0.605 5.605 27 Si 0.810 3.190 28 H -0.196 1.196 29 H -0.223 1.223 30 H -0.204 1.204 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.171 0.829 37 H 0.183 0.817 38 H 0.182 0.818 39 H 0.166 0.834 40 H 0.113 0.887 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.046 0.954 49 H 0.015 0.985 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 19.162 -21.407 -0.541 28.736 hybrid contribution -1.542 0.946 0.225 1.823 sum 17.620 -20.461 -0.316 27.004 Atomic orbital electron populations 1.21814 0.92812 1.04089 1.02275 1.23097 0.96218 0.80550 1.02839 1.86213 1.19516 1.31639 1.87509 1.19300 0.82984 0.93473 0.93776 1.21501 0.94935 0.97734 1.09417 1.21574 0.93787 0.98837 0.92656 1.21393 1.01461 0.91364 1.03209 1.21395 0.89380 1.01449 0.94692 1.19312 0.94876 0.90293 1.14910 1.18640 0.84012 0.82518 0.79776 1.90741 1.31564 1.80064 1.42334 1.47974 1.36128 1.14912 1.33861 1.22207 0.88909 1.04562 0.86159 1.21883 1.00420 0.96129 0.97334 1.21387 0.95989 0.98963 0.98407 1.20978 0.89287 0.90310 0.94802 0.99443 1.22004 0.91966 0.86253 0.96955 0.89661 1.22765 0.95850 0.99601 0.97474 1.21390 0.93722 0.95067 0.83616 1.44472 1.41992 1.39367 1.07904 1.19413 1.16635 1.09039 0.91430 0.89306 1.25741 0.99970 1.01680 0.98891 1.70185 1.31988 1.38650 1.19653 0.85100 0.77702 0.78371 0.77852 1.19618 1.22302 1.20427 0.93182 0.93126 0.87167 0.90241 0.90001 0.82890 0.81713 0.81798 0.83421 0.88654 0.87452 0.86555 0.92921 0.92435 0.91104 0.91871 0.91084 0.95443 0.98498 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 10.28 71.98 0.74 -2.28 16 2 C 0.05 0.92 5.46 71.98 0.39 1.31 16 3 O -0.34 -10.23 9.12 -78.87 -0.72 -10.94 16 4 C 0.15 3.97 6.67 22.84 0.15 4.12 16 5 C -0.22 -3.62 9.03 22.34 0.20 -3.42 16 6 C -0.05 -0.58 10.03 22.30 0.22 -0.35 16 7 C -0.16 -1.85 10.02 22.23 0.22 -1.63 16 8 C -0.05 -0.92 7.55 22.52 0.17 -0.75 16 9 C -0.19 -5.23 4.97 -20.01 -0.10 -5.32 16 10 C 0.56 20.42 7.01 86.70 0.61 21.03 16 11 O -0.57 -25.94 13.14 6.81 0.09 -25.85 16 12 N -0.60 -19.92 2.92 -794.86 -2.32 -22.24 16 13 C 0.10 2.31 5.17 86.02 0.45 2.75 16 14 C -0.12 -2.87 5.93 30.79 0.18 -2.69 16 15 C -0.11 -3.73 5.50 30.26 0.17 -3.57 16 16 C 0.15 6.93 2.60 45.42 0.12 7.05 16 17 H -0.01 -0.60 8.06 -2.39 -0.02 -0.62 16 18 C 0.13 5.47 3.29 46.13 0.15 5.63 16 19 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 20 C -0.12 -5.71 5.16 31.59 0.16 -5.55 16 21 C 0.19 10.62 5.48 86.87 0.48 11.09 16 22 N -0.61 -34.04 3.36 -669.62 -2.25 -36.29 16 23 C -0.24 -13.75 9.95 84.03 0.84 -12.91 16 24 H 0.09 4.83 7.36 -2.91 -0.02 4.80 16 25 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 26 N -0.96 -60.83 10.46 21.65 0.23 -60.61 16 27 Si 0.98 47.23 29.55 68.60 2.03 49.25 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 29 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 30 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.22 7.65 -2.38 -0.02 1.20 16 35 H 0.08 1.20 7.67 -2.39 -0.02 1.18 16 36 H 0.15 1.76 6.30 -2.91 -0.02 1.74 16 37 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 38 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.15 2.18 7.21 -2.91 -0.02 2.16 16 40 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.11 1.95 5.25 -2.39 -0.01 1.94 16 42 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 2.06 7.74 -2.39 -0.02 2.04 16 45 H 0.07 2.34 8.12 -2.39 -0.02 2.32 16 46 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 47 H 0.07 3.72 5.97 -2.39 -0.01 3.71 16 48 H 0.03 1.68 7.19 -2.39 -0.02 1.66 16 49 H 0.00 -0.21 7.81 -2.39 -0.02 -0.23 16 50 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -84.44 385.35 3.60 -80.83 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.93 Total: 15.06 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 5.62 Total: 10.80 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -4.34 Total: -119.14 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.63 Total: -36.80 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -84.44 3.60 -80.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.290 kcal (2) G-P(sol) polarization free energy of solvation -84.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds