Wall clock time and date at job start Wed Apr 1 2020 02:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47305 * 2 1 4 4 C 1.35651 * 117.00501 * 180.02562 * 3 2 1 5 5 C 1.38710 * 120.14361 * 0.02562 * 4 3 2 6 6 C 1.38061 * 120.07905 * 179.97438 * 5 4 3 7 7 C 1.38546 * 120.39220 * 359.97438 * 6 5 4 8 8 C 1.37788 * 120.30226 * 0.25266 * 7 6 5 9 9 C 1.39708 * 119.90283 * 359.51647 * 8 7 6 10 10 C 1.47538 * 120.19075 * 180.21231 * 9 8 7 11 11 O 1.21584 * 120.00293 * 127.38180 * 10 9 8 12 12 N 1.34781 * 119.99673 * 307.38524 * 10 9 8 13 13 C 1.45732 * 117.75791 * 194.76956 * 12 10 9 14 14 C 1.53049 * 109.55590 * 141.08423 * 13 12 10 15 15 C 1.52942 * 108.49266 * 53.80089 * 14 13 12 16 16 C 1.52927 * 109.79410 * 294.00324 * 15 14 13 17 17 H 1.08996 * 110.51394 * 292.90809 * 16 15 14 18 18 C 1.44188 * 117.75996 * 14.50728 * 12 10 9 19 19 H 1.08996 * 109.23161 * 333.41002 * 18 12 10 20 20 C 1.54571 * 111.47639 * 93.66288 * 18 12 10 21 21 C 1.54057 * 103.67068 * 153.28291 * 20 18 12 22 22 N 1.46891 * 107.70793 * 342.84331 * 21 20 18 23 23 C 1.36932 * 125.58192 * 177.04198 * 22 21 20 24 24 H 1.08007 * 119.99852 * 179.97438 * 23 22 21 25 25 C 1.38811 * 120.00231 * 359.97438 * 23 22 21 26 26 N 1.31618 * 120.00171 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99894 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47324 * 59.99774 * 27 25 23 29 29 H 1.48504 * 109.46959 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.46853 * 299.99337 * 27 25 23 31 31 H 1.08994 * 109.47226 * 299.99928 * 1 2 3 32 32 H 1.09002 * 109.47486 * 60.00005 * 1 2 3 33 33 H 1.09000 * 109.47513 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46948 * 240.00497 * 2 1 3 35 35 H 1.08997 * 109.47260 * 120.00402 * 2 1 3 36 36 H 1.08001 * 119.96500 * 359.97438 * 5 4 3 37 37 H 1.08008 * 119.80259 * 179.97438 * 6 5 4 38 38 H 1.07999 * 119.84759 * 179.97438 * 7 6 5 39 39 H 1.07995 * 120.04450 * 179.74506 * 8 7 6 40 40 H 1.09006 * 109.45503 * 261.11131 * 13 12 10 41 41 H 1.08996 * 109.46104 * 21.07506 * 13 12 10 42 42 H 1.09002 * 109.63609 * 173.49947 * 14 13 12 43 43 H 1.08995 * 109.63340 * 293.89935 * 14 13 12 44 44 H 1.08999 * 109.42240 * 54.11305 * 15 14 13 45 45 H 1.09007 * 109.41395 * 173.91053 * 15 14 13 46 46 H 1.09004 * 110.62759 * 34.73564 * 20 18 12 47 47 H 1.08998 * 110.71345 * 271.87150 * 20 18 12 48 48 H 1.09001 * 109.81248 * 223.29792 * 21 20 18 49 49 H 1.09002 * 109.81068 * 102.39468 * 21 20 18 50 50 H 0.97001 * 120.00291 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3511 1.5250 -0.0005 5 6 4.1989 0.4272 -0.0016 6 6 5.5674 0.6097 -0.0027 7 6 6.1042 1.8869 -0.0033 8 6 5.2769 2.9888 0.0025 9 6 3.8902 2.8186 -0.0013 10 6 2.9984 3.9939 0.0001 11 8 2.1237 4.0944 -0.8383 12 7 3.1535 4.9564 0.9308 13 6 2.0699 5.9156 1.1024 14 6 1.8948 6.2300 2.5900 15 6 3.2451 6.6748 3.1540 16 6 4.2325 5.5077 3.1148 17 1 3.9249 4.7236 3.8066 18 6 4.3778 4.9629 1.6925 19 1 4.7795 3.9506 1.7352 20 6 5.4360 5.8919 1.0550 21 6 6.3141 6.3160 2.2476 22 7 5.5663 6.0265 3.4783 23 6 6.0300 6.2082 4.7538 24 1 5.4006 5.9648 5.5971 25 6 7.3091 6.7052 4.9631 26 7 8.0764 7.0014 3.9356 27 14 7.9414 6.9538 6.7032 28 1 7.9398 5.6537 7.4209 29 1 9.3248 7.4915 6.6551 30 1 7.0620 7.9144 7.4169 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.7881 -0.5716 -0.0016 37 1 6.2234 -0.2484 -0.0031 38 1 7.1760 2.0195 -0.0037 39 1 5.6998 3.9825 0.0062 40 1 2.3078 6.8325 0.5630 41 1 1.1452 5.4929 0.7097 42 1 1.1654 7.0308 2.7118 43 1 1.5511 5.3386 3.1147 44 1 3.6340 7.4989 2.5559 45 1 3.1160 7.0057 4.1846 46 1 4.9602 6.7615 0.6014 47 1 6.0282 5.3518 0.3163 48 1 6.5282 7.3831 2.1878 49 1 7.2459 5.7504 2.2398 50 1 8.9703 7.3484 4.0818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049876838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:11 Heat of formation + Delta-G solvation = -2.034863 kcal Electronic energy + Delta-G solvation = -31941.893540 eV Core-core repulsion = 27935.695911 eV Total energy + Delta-G solvation = -4006.197629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.98231 -39.68571 -37.88353 -37.44995 -35.00988 -33.29570 -32.15552 -32.08785 -30.88330 -29.69476 -28.98412 -28.30053 -25.01791 -24.58876 -24.13765 -23.11118 -21.79549 -21.69904 -20.69700 -19.91878 -18.64133 -17.87382 -17.20999 -16.88475 -16.25391 -16.11644 -15.68532 -15.43075 -14.81080 -14.66340 -14.50489 -14.18915 -13.76979 -13.67955 -13.58505 -13.38039 -13.20670 -12.79548 -12.75710 -12.41080 -12.29402 -12.12596 -12.00305 -11.80666 -11.69715 -11.37480 -11.08283 -10.99233 -10.92588 -10.84276 -10.75702 -10.65365 -10.41137 -10.13565 -10.03216 -9.80318 -9.65349 -9.51834 -8.87466 -8.62513 -8.32482 -8.16346 -6.89590 -5.74579 -3.08923 1.02640 1.38083 2.86216 3.04279 3.26347 3.38670 3.43518 3.44170 3.75056 4.43533 4.57495 4.67534 4.70757 4.81213 4.93611 4.99919 5.11769 5.13713 5.26129 5.29468 5.31486 5.32282 5.36316 5.49827 5.52569 5.58275 5.58384 5.62677 5.74833 5.79045 5.84849 5.92137 6.06579 6.13619 6.19911 6.23356 6.25807 6.28638 6.34145 6.42742 6.50235 6.55325 6.70377 6.78514 7.00231 7.03480 7.29820 7.52550 7.55003 7.66825 7.78232 8.21197 8.41266 9.17880 9.77467 10.42083 11.36356 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.003593 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.416755 B = 7791.996385 C = 8631.676172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.300 6.300 4 C 0.173 3.827 5 C -0.219 4.219 6 C -0.061 4.061 7 C -0.160 4.160 8 C -0.060 4.060 9 C -0.162 4.162 10 C 0.566 3.434 11 O -0.533 6.533 12 N -0.585 5.585 13 C 0.122 3.878 14 C -0.132 4.132 15 C -0.130 4.130 16 C 0.163 3.837 17 H 0.055 0.945 18 C 0.121 3.879 19 H 0.095 0.905 20 C -0.163 4.163 21 C 0.180 3.820 22 N -0.595 5.595 23 C -0.227 4.227 24 H 0.077 0.923 25 C -0.005 4.005 26 N -0.921 5.921 27 Si 0.911 3.089 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.042 0.958 49 H 0.054 0.946 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.780 -12.565 -8.405 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.213 6.213 4 C 0.126 3.874 5 C -0.238 4.238 6 C -0.080 4.080 7 C -0.178 4.178 8 C -0.078 4.078 9 C -0.166 4.166 10 C 0.354 3.646 11 O -0.410 6.410 12 N -0.317 5.317 13 C 0.000 4.000 14 C -0.170 4.170 15 C -0.171 4.171 16 C 0.054 3.946 17 H 0.073 0.927 18 C 0.016 3.984 19 H 0.113 0.887 20 C -0.202 4.202 21 C 0.055 3.945 22 N -0.319 5.319 23 C -0.355 4.355 24 H 0.095 0.905 25 C -0.202 4.202 26 N -0.568 5.568 27 Si 0.742 3.258 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.169 0.831 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.189 -12.246 -8.708 18.156 hybrid contribution 0.633 -0.034 1.013 1.195 sum -9.556 -12.281 -7.695 17.359 Atomic orbital electron populations 1.21756 0.92661 1.02596 1.03829 1.22820 0.96126 0.82014 1.01265 1.86160 1.18507 1.29040 1.87552 1.18825 0.82623 0.92531 0.93432 1.21141 0.94394 0.97639 1.10643 1.21086 0.94164 0.97538 0.95166 1.21051 1.00415 0.92027 1.04345 1.21897 0.91002 1.01261 0.93647 1.19235 0.94041 0.91382 1.11922 1.18132 0.83432 0.81919 0.81143 1.90737 1.35393 1.78397 1.36475 1.46931 1.18309 1.29301 1.37114 1.21274 0.89755 0.92192 0.96823 1.21858 0.98898 1.01392 0.94876 1.22115 0.93735 1.00067 1.01143 1.20817 0.87916 0.94119 0.91749 0.92696 1.21536 0.83171 1.00999 0.92709 0.88730 1.23392 0.97804 0.99064 0.99902 1.21054 0.92496 0.99529 0.81391 1.44482 1.09854 1.75146 1.02455 1.18965 0.97378 1.37052 0.82132 0.90468 1.24775 0.96679 1.01289 0.97410 1.69938 1.09286 1.49704 1.27890 0.86212 0.77896 0.77901 0.83809 1.21162 1.21628 1.21204 0.91466 0.91349 0.90471 0.92006 0.92004 0.85178 0.85501 0.85045 0.83118 0.92204 0.90003 0.91140 0.91854 0.91944 0.91879 0.91800 0.91608 0.94025 0.92803 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.05 0.52 5.46 37.16 0.20 0.72 16 3 O -0.30 -4.37 9.30 -23.44 -0.22 -4.59 16 4 C 0.17 2.54 6.68 -38.70 -0.26 2.29 16 5 C -0.22 -2.58 9.03 -39.47 -0.36 -2.94 16 6 C -0.06 -0.68 10.03 -39.53 -0.40 -1.08 16 7 C -0.16 -1.99 10.02 -39.63 -0.40 -2.39 16 8 C -0.06 -0.88 7.37 -39.20 -0.29 -1.17 16 9 C -0.16 -2.61 4.97 -104.84 -0.52 -3.13 16 10 C 0.57 10.11 6.71 -12.47 -0.08 10.02 16 11 O -0.53 -10.77 16.13 0.50 0.01 -10.76 16 12 N -0.59 -9.90 2.79 -168.63 -0.47 -10.37 16 13 C 0.12 1.88 6.15 -4.43 -0.03 1.85 16 14 C -0.13 -1.92 6.10 -26.74 -0.16 -2.08 16 15 C -0.13 -2.33 5.31 -26.80 -0.14 -2.47 16 16 C 0.16 3.22 3.27 -67.34 -0.22 3.00 16 17 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 18 C 0.12 2.14 2.28 -68.34 -0.16 1.99 16 19 H 0.10 1.70 4.77 -51.93 -0.25 1.45 16 20 C -0.16 -2.96 6.04 -25.35 -0.15 -3.11 16 21 C 0.18 4.13 5.39 -3.28 -0.02 4.12 16 22 N -0.59 -14.26 2.93 -163.88 -0.48 -14.74 16 23 C -0.23 -6.03 10.27 -15.06 -0.15 -6.18 16 24 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 25 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 26 N -0.92 -25.97 10.29 55.49 0.57 -25.40 16 27 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 35 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 36 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 37 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.15 2.22 3.70 -52.49 -0.19 2.03 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.26 7.21 -51.93 -0.37 0.89 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.19 8.02 -51.93 -0.42 0.77 16 45 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 47 H 0.07 1.07 5.43 -51.93 -0.28 0.79 16 48 H 0.04 1.07 7.60 -51.93 -0.39 0.67 16 49 H 0.05 1.36 7.25 -51.93 -0.38 0.98 16 50 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -31.60 384.30 -10.28 -41.87 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.61 Total: 3.38 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.85 Total: -1.66 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.38 Total: -50.51 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.21 Total: -15.35 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.60 -10.28 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.840 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds