Wall clock time and date at job start Wed Apr 1 2020 02:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47305 * 2 1 4 4 C 1.35651 * 117.00501 * 180.02562 * 3 2 1 5 5 C 1.38710 * 120.14361 * 0.02562 * 4 3 2 6 6 C 1.38061 * 120.07905 * 179.97438 * 5 4 3 7 7 C 1.38546 * 120.39220 * 359.97438 * 6 5 4 8 8 C 1.37788 * 120.30226 * 0.25266 * 7 6 5 9 9 C 1.39708 * 119.90283 * 359.51647 * 8 7 6 10 10 C 1.47538 * 120.19075 * 180.21231 * 9 8 7 11 11 O 1.21584 * 120.00293 * 127.38180 * 10 9 8 12 12 N 1.34781 * 119.99673 * 307.38524 * 10 9 8 13 13 C 1.45732 * 117.75791 * 194.76956 * 12 10 9 14 14 C 1.53049 * 109.55590 * 141.08423 * 13 12 10 15 15 C 1.52942 * 108.49266 * 53.80089 * 14 13 12 16 16 C 1.52927 * 109.79410 * 294.00324 * 15 14 13 17 17 H 1.08996 * 110.51394 * 292.90809 * 16 15 14 18 18 C 1.44188 * 117.75996 * 14.50728 * 12 10 9 19 19 H 1.08996 * 109.23161 * 333.41002 * 18 12 10 20 20 C 1.54571 * 111.47639 * 93.66288 * 18 12 10 21 21 C 1.54057 * 103.67068 * 153.28291 * 20 18 12 22 22 N 1.46891 * 107.70793 * 342.84331 * 21 20 18 23 23 C 1.36932 * 125.58192 * 177.04198 * 22 21 20 24 24 H 1.08007 * 119.99852 * 179.97438 * 23 22 21 25 25 C 1.38811 * 120.00231 * 359.97438 * 23 22 21 26 26 N 1.31618 * 120.00171 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99894 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47324 * 59.99774 * 27 25 23 29 29 H 1.48504 * 109.46959 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.46853 * 299.99337 * 27 25 23 31 31 H 1.08994 * 109.47226 * 299.99928 * 1 2 3 32 32 H 1.09002 * 109.47486 * 60.00005 * 1 2 3 33 33 H 1.09000 * 109.47513 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46948 * 240.00497 * 2 1 3 35 35 H 1.08997 * 109.47260 * 120.00402 * 2 1 3 36 36 H 1.08001 * 119.96500 * 359.97438 * 5 4 3 37 37 H 1.08008 * 119.80259 * 179.97438 * 6 5 4 38 38 H 1.07999 * 119.84759 * 179.97438 * 7 6 5 39 39 H 1.07995 * 120.04450 * 179.74506 * 8 7 6 40 40 H 1.09006 * 109.45503 * 261.11131 * 13 12 10 41 41 H 1.08996 * 109.46104 * 21.07506 * 13 12 10 42 42 H 1.09002 * 109.63609 * 173.49947 * 14 13 12 43 43 H 1.08995 * 109.63340 * 293.89935 * 14 13 12 44 44 H 1.08999 * 109.42240 * 54.11305 * 15 14 13 45 45 H 1.09007 * 109.41395 * 173.91053 * 15 14 13 46 46 H 1.09004 * 110.62759 * 34.73564 * 20 18 12 47 47 H 1.08998 * 110.71345 * 271.87150 * 20 18 12 48 48 H 1.09001 * 109.81248 * 223.29792 * 21 20 18 49 49 H 1.09002 * 109.81068 * 102.39468 * 21 20 18 50 50 H 0.97001 * 120.00291 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3511 1.5250 -0.0005 5 6 4.1989 0.4272 -0.0016 6 6 5.5674 0.6097 -0.0027 7 6 6.1042 1.8869 -0.0033 8 6 5.2769 2.9888 0.0025 9 6 3.8902 2.8186 -0.0013 10 6 2.9984 3.9939 0.0001 11 8 2.1237 4.0944 -0.8383 12 7 3.1535 4.9564 0.9308 13 6 2.0699 5.9156 1.1024 14 6 1.8948 6.2300 2.5900 15 6 3.2451 6.6748 3.1540 16 6 4.2325 5.5077 3.1148 17 1 3.9249 4.7236 3.8066 18 6 4.3778 4.9629 1.6925 19 1 4.7795 3.9506 1.7352 20 6 5.4360 5.8919 1.0550 21 6 6.3141 6.3160 2.2476 22 7 5.5663 6.0265 3.4783 23 6 6.0300 6.2082 4.7538 24 1 5.4006 5.9648 5.5971 25 6 7.3091 6.7052 4.9631 26 7 8.0764 7.0014 3.9356 27 14 7.9414 6.9538 6.7032 28 1 7.9398 5.6537 7.4209 29 1 9.3248 7.4915 6.6551 30 1 7.0620 7.9144 7.4169 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.7881 -0.5716 -0.0016 37 1 6.2234 -0.2484 -0.0031 38 1 7.1760 2.0195 -0.0037 39 1 5.6998 3.9825 0.0062 40 1 2.3078 6.8325 0.5630 41 1 1.1452 5.4929 0.7097 42 1 1.1654 7.0308 2.7118 43 1 1.5511 5.3386 3.1147 44 1 3.6340 7.4989 2.5559 45 1 3.1160 7.0057 4.1846 46 1 4.9602 6.7615 0.6014 47 1 6.0282 5.3518 0.3163 48 1 6.5282 7.3831 2.1878 49 1 7.2459 5.7504 2.2398 50 1 8.9703 7.3484 4.0818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049876838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:10 Heat of formation + Delta-G solvation = -19.097094 kcal Electronic energy + Delta-G solvation = -31942.633414 eV Core-core repulsion = 27935.695911 eV Total energy + Delta-G solvation = -4006.937503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.24521 -40.82949 -39.38057 -38.44216 -36.62633 -34.65750 -33.96807 -32.93695 -31.95623 -30.96134 -30.46427 -29.86187 -26.54653 -26.24102 -25.04879 -24.32425 -23.16045 -22.68601 -22.17353 -21.51157 -19.85595 -19.16752 -18.67064 -18.39573 -17.33899 -17.14296 -16.87712 -16.82794 -16.49194 -16.07152 -15.79396 -15.39526 -15.28731 -15.02254 -14.84092 -14.50503 -14.34706 -14.16291 -14.00012 -13.68927 -13.54301 -13.40877 -13.24022 -12.98094 -12.86800 -12.75091 -12.64552 -12.41924 -12.34088 -12.31442 -12.07841 -12.05246 -11.79864 -11.68137 -11.59818 -11.52889 -11.30373 -10.88311 -10.64181 -9.93611 -9.67175 -9.23146 -8.87148 -7.80632 -5.16375 -0.00299 0.39333 1.49308 1.51350 1.55786 1.57494 1.95397 2.18415 2.52154 2.72248 3.33624 3.36330 3.61833 3.75471 3.76445 3.85267 3.93700 4.00421 4.04636 4.08824 4.09800 4.18673 4.24112 4.32700 4.35277 4.36306 4.47286 4.54936 4.60138 4.64859 4.72039 4.79252 4.85478 4.88656 4.91850 4.99706 5.05263 5.10508 5.14388 5.24720 5.29747 5.33084 5.44552 5.49323 5.54962 5.61204 5.66708 5.75727 5.78372 6.19615 6.28212 6.41882 7.05219 7.13575 7.79172 8.43063 9.28749 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.003593 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.416755 B = 7791.996385 C = 8631.676172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.329 6.329 4 C 0.159 3.841 5 C -0.214 4.214 6 C -0.051 4.051 7 C -0.166 4.166 8 C -0.073 4.073 9 C -0.195 4.195 10 C 0.566 3.434 11 O -0.563 6.563 12 N -0.585 5.585 13 C 0.118 3.882 14 C -0.117 4.117 15 C -0.122 4.122 16 C 0.157 3.843 17 H 0.051 0.949 18 C 0.139 3.861 19 H 0.096 0.904 20 C -0.148 4.148 21 C 0.194 3.806 22 N -0.612 5.612 23 C -0.236 4.236 24 H 0.081 0.919 25 C -0.060 4.060 26 N -0.948 5.948 27 Si 0.974 3.026 28 H -0.277 1.277 29 H -0.296 1.296 30 H -0.280 1.280 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.088 0.912 48 H 0.006 0.994 49 H 0.026 0.974 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.546 -14.942 -8.283 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.242 6.242 4 C 0.112 3.888 5 C -0.232 4.232 6 C -0.069 4.069 7 C -0.184 4.184 8 C -0.091 4.091 9 C -0.198 4.198 10 C 0.356 3.644 11 O -0.443 6.443 12 N -0.315 5.315 13 C -0.004 4.004 14 C -0.155 4.155 15 C -0.162 4.162 16 C 0.050 3.950 17 H 0.069 0.931 18 C 0.033 3.967 19 H 0.114 0.886 20 C -0.187 4.187 21 C 0.068 3.932 22 N -0.336 5.336 23 C -0.364 4.364 24 H 0.099 0.901 25 C -0.253 4.253 26 N -0.597 5.597 27 Si 0.802 3.198 28 H -0.203 1.203 29 H -0.222 1.222 30 H -0.207 1.207 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.179 0.821 37 H 0.183 0.817 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.024 0.976 49 H 0.044 0.956 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.996 -14.637 -8.580 20.218 hybrid contribution 0.825 0.618 0.955 1.406 sum -10.171 -14.019 -7.625 18.924 Atomic orbital electron populations 1.21799 0.91887 1.04217 1.02719 1.23170 0.96833 0.80376 1.02793 1.86132 1.18634 1.31893 1.87577 1.19064 0.83260 0.92783 0.93685 1.21516 0.94422 0.98180 1.09099 1.21541 0.94460 0.98094 0.92778 1.21347 1.01143 0.92151 1.03738 1.21836 0.90778 1.01642 0.94840 1.19266 0.94373 0.91453 1.14744 1.18472 0.83215 0.82278 0.80475 1.90704 1.36904 1.79073 1.37572 1.46946 1.18193 1.29618 1.36747 1.21400 0.89467 0.92074 0.97432 1.21774 0.97386 1.02498 0.93890 1.21937 0.95017 0.98577 1.00631 1.20997 0.86541 0.94663 0.92834 0.93056 1.21227 0.83403 1.00676 0.91355 0.88600 1.23237 0.97460 0.99550 0.98419 1.20732 0.92495 0.96870 0.83069 1.44688 1.11606 1.75264 1.02065 1.19309 0.97516 1.36174 0.83436 0.90102 1.25537 0.97105 1.01809 1.00851 1.70146 1.09156 1.50804 1.29561 0.85227 0.76789 0.77947 0.79794 1.20316 1.22249 1.20654 0.92463 0.92551 0.87443 0.90364 0.90364 0.82067 0.81748 0.83336 0.84142 0.91792 0.89702 0.88266 0.91346 0.93375 0.92711 0.91509 0.89404 0.97587 0.95623 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.04 0.74 5.46 71.98 0.39 1.13 16 3 O -0.33 -9.28 9.30 -85.08 -0.79 -10.07 16 4 C 0.16 4.48 6.68 22.84 0.15 4.63 16 5 C -0.21 -4.38 9.03 22.34 0.20 -4.18 16 6 C -0.05 -0.95 10.03 22.30 0.22 -0.73 16 7 C -0.17 -3.79 10.02 22.24 0.22 -3.57 16 8 C -0.07 -2.09 7.37 22.52 0.17 -1.92 16 9 C -0.19 -6.20 4.97 -20.01 -0.10 -6.30 16 10 C 0.57 20.27 6.71 86.70 0.58 20.85 16 11 O -0.56 -22.98 16.13 0.60 0.01 -22.97 16 12 N -0.58 -19.65 2.79 -805.68 -2.25 -21.90 16 13 C 0.12 3.54 6.15 86.54 0.53 4.07 16 14 C -0.12 -3.24 6.10 30.59 0.19 -3.05 16 15 C -0.12 -4.31 5.31 30.55 0.16 -4.15 16 16 C 0.16 6.26 3.27 44.74 0.15 6.41 16 17 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 18 C 0.14 4.94 2.28 45.95 0.10 5.04 16 19 H 0.10 3.46 4.77 -2.39 -0.01 3.44 16 20 C -0.15 -5.46 6.04 31.49 0.19 -5.27 16 21 C 0.19 9.24 5.39 86.66 0.47 9.70 16 22 N -0.61 -30.02 2.93 -672.40 -1.97 -32.00 16 23 C -0.24 -12.70 10.27 84.03 0.86 -11.84 16 24 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 25 C -0.06 -3.29 5.49 84.86 0.47 -2.83 16 26 N -0.95 -55.18 10.29 21.65 0.22 -54.96 16 27 Si 0.97 44.71 29.55 68.60 2.03 46.73 16 28 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 29 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 30 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.08 7.66 -2.38 -0.02 1.06 16 35 H 0.08 1.08 7.66 -2.39 -0.02 1.06 16 36 H 0.16 2.20 6.30 -2.91 -0.02 2.18 16 37 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.14 4.14 3.70 -2.91 -0.01 4.13 16 40 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.08 2.54 7.21 -2.39 -0.02 2.53 16 42 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.84 8.02 -2.39 -0.02 1.82 16 45 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.09 2.88 5.43 -2.39 -0.01 2.86 16 48 H 0.01 0.32 7.60 -2.39 -0.02 0.30 16 49 H 0.03 1.35 7.25 -2.39 -0.02 1.33 16 50 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -71.01 384.30 3.89 -67.12 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.94 Total: 21.52 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.70 Total: 6.52 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -4.00 Total: -108.85 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.78 Total: -33.04 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -71.01 3.89 -67.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.021 kcal (2) G-P(sol) polarization free energy of solvation -71.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds