Wall clock time and date at job start Wed Apr 1 2020 02:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.47258 * 2 1 4 4 C 1.35652 * 116.99778 * 179.97438 * 3 2 1 5 5 C 1.38711 * 120.15397 * 0.23078 * 4 3 2 6 6 C 1.38058 * 120.08381 * 180.27660 * 5 4 3 7 7 C 1.38549 * 120.38967 * 359.74482 * 6 5 4 8 8 C 1.37791 * 120.30223 * 0.02562 * 7 6 5 9 9 C 1.39710 * 119.90424 * 359.97438 * 8 7 6 10 10 C 1.47540 * 120.18806 * 179.97438 * 9 8 7 11 11 O 1.21593 * 119.99469 * 233.63280 * 10 9 8 12 12 N 1.34779 * 120.00111 * 53.63161 * 10 9 8 13 13 C 1.47854 * 122.22455 * 355.01755 * 12 10 9 14 14 C 1.52714 * 111.05283 * 127.49525 * 13 12 10 15 15 C 1.53866 * 111.52705 * 48.53752 * 14 13 12 16 16 C 1.51083 * 107.34299 * 303.06723 * 15 14 13 17 17 H 1.09008 * 108.73274 * 309.15933 * 16 15 14 18 18 C 1.45725 * 122.22594 * 174.99907 * 12 10 9 19 19 H 1.08993 * 111.64298 * 119.16627 * 18 12 10 20 20 C 1.53435 * 116.37237 * 350.11857 * 18 12 10 21 21 C 1.55471 * 101.66973 * 207.27077 * 20 18 12 22 22 N 1.45019 * 119.20038 * 183.88896 * 16 15 14 23 23 C 1.36941 * 126.56009 * 28.75221 * 22 16 15 24 24 H 1.07997 * 120.00011 * 0.02562 * 23 22 16 25 25 C 1.38811 * 119.99913 * 180.02562 * 23 22 16 26 26 N 1.31614 * 120.00107 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99771 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47062 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47171 * 120.00120 * 27 25 23 30 30 H 1.48499 * 109.46913 * 239.99896 * 27 25 23 31 31 H 1.08993 * 109.47257 * 59.99496 * 1 2 3 32 32 H 1.09003 * 109.47235 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46700 * 299.99789 * 1 2 3 34 34 H 1.09002 * 109.47132 * 240.00349 * 2 1 3 35 35 H 1.09001 * 109.47096 * 119.99883 * 2 1 3 36 36 H 1.07993 * 119.95788 * 0.04604 * 5 4 3 37 37 H 1.07997 * 119.80139 * 179.76797 * 6 5 4 38 38 H 1.07996 * 119.84663 * 180.02562 * 7 6 5 39 39 H 1.07999 * 120.04857 * 179.97438 * 8 7 6 40 40 H 1.09003 * 109.15636 * 247.89448 * 13 12 10 41 41 H 1.08997 * 109.16113 * 7.13597 * 13 12 10 42 42 H 1.09002 * 109.06928 * 288.00078 * 14 13 12 43 43 H 1.09005 * 109.06501 * 169.05933 * 14 13 12 44 44 H 1.08999 * 109.88319 * 183.61096 * 15 14 13 45 45 H 1.08992 * 109.88799 * 62.52271 * 15 14 13 46 46 H 1.09004 * 110.98605 * 89.17392 * 20 18 12 47 47 H 1.08997 * 110.98974 * 325.37095 * 20 18 12 48 48 H 1.08998 * 109.95814 * 263.22042 * 21 20 18 49 49 H 1.08998 * 109.98893 * 142.00214 * 21 20 18 50 50 H 0.97007 * 120.00066 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3512 1.5250 0.0005 5 6 4.1990 0.4272 -0.0038 6 6 5.5675 0.6096 0.0026 7 6 6.1043 1.8869 0.0079 8 6 5.2769 2.9887 0.0075 9 6 3.8902 2.8185 0.0011 10 6 2.9985 3.9939 0.0012 11 8 2.1301 4.0980 0.8459 12 7 3.1465 4.9522 -0.9349 13 6 4.2511 4.9307 -1.9174 14 6 3.7200 5.0637 -3.3430 15 6 2.7202 6.2267 -3.4668 16 6 1.6125 5.9763 -2.4704 17 1 1.2435 4.9595 -2.6054 18 6 2.2282 6.0782 -1.0462 19 1 2.7395 7.0298 -0.9013 20 6 0.9504 6.0019 -0.2002 21 6 -0.0333 6.8667 -1.0377 22 7 0.4795 6.8806 -2.4300 23 6 -0.0209 7.6086 -3.4763 24 1 0.4377 7.5379 -4.4515 25 6 -1.1176 8.4374 -3.2836 26 7 -1.6763 8.5239 -2.0950 27 14 -1.8007 9.4298 -4.7111 28 1 -0.9996 9.1575 -5.9314 29 1 -3.2147 9.0442 -4.9504 30 1 -1.7305 10.8771 -4.3862 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.7882 -0.5715 -0.0083 37 1 6.2234 -0.2484 0.0030 38 1 7.1761 2.0195 0.0124 39 1 5.6997 3.9825 0.0121 40 1 4.9304 5.7576 -1.7101 41 1 4.7940 3.9900 -1.8249 42 1 3.2236 4.1355 -3.6262 43 1 4.5564 5.2396 -4.0196 44 1 2.3106 6.2575 -4.4765 45 1 3.2177 7.1692 -3.2388 46 1 1.1092 6.4364 0.7868 47 1 0.5960 4.9743 -0.1202 48 1 -0.0650 7.8821 -0.6426 49 1 -1.0303 6.4268 -1.0127 50 1 -2.4425 9.1034 -1.9602 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049876840.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:17 Heat of formation + Delta-G solvation = -3.750350 kcal Electronic energy + Delta-G solvation = -31755.060650 eV Core-core repulsion = 27748.788632 eV Total energy + Delta-G solvation = -4006.272018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.82541 -39.70119 -37.83179 -37.25604 -35.32087 -32.52963 -32.41074 -32.06348 -31.13154 -29.75763 -28.73936 -28.11382 -25.08769 -24.41891 -24.23219 -22.96059 -21.87381 -21.33998 -20.84152 -19.67229 -19.19400 -18.07824 -16.95427 -16.39244 -16.28403 -16.14108 -15.46062 -15.28674 -14.93747 -14.63377 -14.51736 -14.09999 -13.99354 -13.66409 -13.59184 -13.39450 -13.19680 -12.73666 -12.66489 -12.37481 -12.24779 -12.15388 -12.10470 -11.79213 -11.73580 -11.48463 -11.18122 -11.06182 -10.92011 -10.82252 -10.62044 -10.43967 -10.34360 -10.02735 -9.91581 -9.76598 -9.55896 -9.23430 -8.91580 -8.54471 -8.38077 -8.10217 -6.76524 -5.64743 -2.98723 0.87127 1.19972 2.94098 3.01233 3.22333 3.43212 3.48165 3.50920 3.62187 4.44640 4.53962 4.58050 4.70722 4.74507 4.83487 4.92593 4.99655 5.04781 5.08940 5.19196 5.25251 5.35677 5.43766 5.51148 5.53405 5.57438 5.67425 5.67702 5.74245 5.85249 5.93900 5.94563 6.03891 6.05215 6.09215 6.17712 6.21432 6.34208 6.37575 6.47432 6.49760 6.64294 6.79627 6.87958 6.98540 7.23696 7.27960 7.64767 7.72260 7.81186 7.90771 8.30762 8.54775 9.24926 9.88868 10.57816 11.47314 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003319 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.472931 B = 8434.120820 C = 9303.138197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 O -0.295 6.295 4 C 0.177 3.823 5 C -0.217 4.217 6 C -0.064 4.064 7 C -0.166 4.166 8 C -0.053 4.053 9 C -0.155 4.155 10 C 0.568 3.432 11 O -0.517 6.517 12 N -0.594 5.594 13 C 0.105 3.895 14 C -0.129 4.129 15 C -0.115 4.115 16 C 0.159 3.841 17 H 0.017 0.983 18 C 0.117 3.883 19 H 0.080 0.920 20 C -0.128 4.128 21 C 0.173 3.827 22 N -0.593 5.593 23 C -0.224 4.224 24 H 0.079 0.921 25 C -0.008 4.008 26 N -0.919 5.919 27 Si 0.909 3.091 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.056 0.944 49 H 0.038 0.962 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.404 -17.755 3.242 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.207 6.207 4 C 0.129 3.871 5 C -0.235 4.235 6 C -0.083 4.083 7 C -0.184 4.184 8 C -0.072 4.072 9 C -0.159 4.159 10 C 0.355 3.645 11 O -0.392 6.392 12 N -0.327 5.327 13 C -0.018 4.018 14 C -0.168 4.168 15 C -0.153 4.153 16 C 0.050 3.950 17 H 0.034 0.966 18 C 0.013 3.987 19 H 0.098 0.902 20 C -0.166 4.166 21 C 0.048 3.952 22 N -0.317 5.317 23 C -0.352 4.352 24 H 0.097 0.903 25 C -0.204 4.204 26 N -0.567 5.567 27 Si 0.740 3.260 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.074 0.926 49 H 0.057 0.943 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.544 -17.408 3.666 23.624 hybrid contribution -0.229 0.273 -0.821 0.895 sum 15.314 -17.135 2.845 23.156 Atomic orbital electron populations 1.21773 0.92370 1.02629 1.04290 1.22850 0.96452 0.81725 1.01064 1.86240 1.18147 1.29238 1.87050 1.18916 0.82994 0.92538 0.92666 1.21202 0.94376 0.97865 1.10099 1.21045 0.94185 0.97444 0.95583 1.20957 0.99966 0.92146 1.05335 1.21151 0.90855 0.99711 0.95459 1.19382 0.94011 0.91738 1.10784 1.17892 0.83624 0.81674 0.81314 1.90804 1.33853 1.77510 1.37072 1.47899 1.29225 1.24323 1.31254 1.21885 0.88871 1.02295 0.88753 1.21895 0.99515 0.99928 0.95428 1.21419 0.96006 0.97201 1.00709 1.20749 0.88261 0.94055 0.91945 0.96575 1.22386 0.90035 0.87130 0.99178 0.90248 1.22917 0.94110 1.01961 0.97613 1.21737 0.93728 0.97565 0.82147 1.44092 1.30385 1.49980 1.07270 1.19038 1.09672 1.17780 0.88748 0.90340 1.24800 0.98533 1.00246 0.96870 1.69965 1.24534 1.41787 1.20384 0.86083 0.78712 0.79830 0.81367 1.20565 1.21835 1.21824 0.91192 0.90440 0.91144 0.92068 0.92018 0.85066 0.85555 0.85378 0.84786 0.91562 0.89875 0.91947 0.91007 0.91541 0.91774 0.92015 0.90342 0.92566 0.94333 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 2 C 0.05 0.55 5.46 37.16 0.20 0.76 16 3 O -0.29 -4.40 9.31 -22.84 -0.21 -4.61 16 4 C 0.18 2.41 6.68 -38.69 -0.26 2.15 16 5 C -0.22 -2.18 9.03 -39.47 -0.36 -2.54 16 6 C -0.06 -0.54 10.03 -39.53 -0.40 -0.94 16 7 C -0.17 -1.43 10.02 -39.63 -0.40 -1.82 16 8 C -0.05 -0.57 7.47 -39.20 -0.29 -0.87 16 9 C -0.16 -2.22 4.99 -104.84 -0.52 -2.75 16 10 C 0.57 10.13 6.81 -12.47 -0.08 10.04 16 11 O -0.52 -11.06 13.70 1.10 0.02 -11.05 16 12 N -0.59 -10.04 2.91 -165.21 -0.48 -10.52 16 13 C 0.10 1.34 5.52 -3.45 -0.02 1.33 16 14 C -0.13 -1.74 5.92 -26.43 -0.16 -1.89 16 15 C -0.11 -2.03 5.45 -27.24 -0.15 -2.18 16 16 C 0.16 3.45 2.58 -68.36 -0.18 3.27 16 17 H 0.02 0.40 8.04 -51.92 -0.42 -0.02 16 18 C 0.12 2.34 3.32 -66.80 -0.22 2.11 16 19 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 20 C -0.13 -2.85 4.94 -25.19 -0.12 -2.98 16 21 C 0.17 4.50 5.47 -1.69 -0.01 4.49 16 22 N -0.59 -15.57 3.35 -163.29 -0.55 -16.12 16 23 C -0.22 -6.29 9.94 -15.06 -0.15 -6.44 16 24 H 0.08 2.11 7.31 -52.49 -0.38 1.73 16 25 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 26 N -0.92 -27.64 10.46 55.49 0.58 -27.06 16 27 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.51 7.65 -51.93 -0.40 0.12 16 35 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 36 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 1.24 7.33 -52.49 -0.38 0.85 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.91 4.88 -51.93 -0.25 0.66 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 45 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 46 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.08 1.86 6.37 -51.93 -0.33 1.53 16 48 H 0.06 1.58 7.18 -51.93 -0.37 1.21 16 49 H 0.04 1.10 7.81 -51.93 -0.41 0.70 16 50 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -34.53 385.95 -10.54 -45.07 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.86 Total: 0.82 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.83 Total: 0.30 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.45 Total: -53.69 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.20 Total: -15.66 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.53 -10.54 -45.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876840.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.317 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds