Wall clock time and date at job start Wed Apr 1 2020 02:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.47258 * 2 1 4 4 C 1.35652 * 116.99778 * 179.97438 * 3 2 1 5 5 C 1.38711 * 120.15397 * 0.23078 * 4 3 2 6 6 C 1.38058 * 120.08381 * 180.27660 * 5 4 3 7 7 C 1.38549 * 120.38967 * 359.74482 * 6 5 4 8 8 C 1.37791 * 120.30223 * 0.02562 * 7 6 5 9 9 C 1.39710 * 119.90424 * 359.97438 * 8 7 6 10 10 C 1.47540 * 120.18806 * 179.97438 * 9 8 7 11 11 O 1.21593 * 119.99469 * 233.63280 * 10 9 8 12 12 N 1.34779 * 120.00111 * 53.63161 * 10 9 8 13 13 C 1.47854 * 122.22455 * 355.01755 * 12 10 9 14 14 C 1.52714 * 111.05283 * 127.49525 * 13 12 10 15 15 C 1.53866 * 111.52705 * 48.53752 * 14 13 12 16 16 C 1.51083 * 107.34299 * 303.06723 * 15 14 13 17 17 H 1.09008 * 108.73274 * 309.15933 * 16 15 14 18 18 C 1.45725 * 122.22594 * 174.99907 * 12 10 9 19 19 H 1.08993 * 111.64298 * 119.16627 * 18 12 10 20 20 C 1.53435 * 116.37237 * 350.11857 * 18 12 10 21 21 C 1.55471 * 101.66973 * 207.27077 * 20 18 12 22 22 N 1.45019 * 119.20038 * 183.88896 * 16 15 14 23 23 C 1.36941 * 126.56009 * 28.75221 * 22 16 15 24 24 H 1.07997 * 120.00011 * 0.02562 * 23 22 16 25 25 C 1.38811 * 119.99913 * 180.02562 * 23 22 16 26 26 N 1.31614 * 120.00107 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99771 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47062 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47171 * 120.00120 * 27 25 23 30 30 H 1.48499 * 109.46913 * 239.99896 * 27 25 23 31 31 H 1.08993 * 109.47257 * 59.99496 * 1 2 3 32 32 H 1.09003 * 109.47235 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46700 * 299.99789 * 1 2 3 34 34 H 1.09002 * 109.47132 * 240.00349 * 2 1 3 35 35 H 1.09001 * 109.47096 * 119.99883 * 2 1 3 36 36 H 1.07993 * 119.95788 * 0.04604 * 5 4 3 37 37 H 1.07997 * 119.80139 * 179.76797 * 6 5 4 38 38 H 1.07996 * 119.84663 * 180.02562 * 7 6 5 39 39 H 1.07999 * 120.04857 * 179.97438 * 8 7 6 40 40 H 1.09003 * 109.15636 * 247.89448 * 13 12 10 41 41 H 1.08997 * 109.16113 * 7.13597 * 13 12 10 42 42 H 1.09002 * 109.06928 * 288.00078 * 14 13 12 43 43 H 1.09005 * 109.06501 * 169.05933 * 14 13 12 44 44 H 1.08999 * 109.88319 * 183.61096 * 15 14 13 45 45 H 1.08992 * 109.88799 * 62.52271 * 15 14 13 46 46 H 1.09004 * 110.98605 * 89.17392 * 20 18 12 47 47 H 1.08997 * 110.98974 * 325.37095 * 20 18 12 48 48 H 1.08998 * 109.95814 * 263.22042 * 21 20 18 49 49 H 1.08998 * 109.98893 * 142.00214 * 21 20 18 50 50 H 0.97007 * 120.00066 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3512 1.5250 0.0005 5 6 4.1990 0.4272 -0.0038 6 6 5.5675 0.6096 0.0026 7 6 6.1043 1.8869 0.0079 8 6 5.2769 2.9887 0.0075 9 6 3.8902 2.8185 0.0011 10 6 2.9985 3.9939 0.0012 11 8 2.1301 4.0980 0.8459 12 7 3.1465 4.9522 -0.9349 13 6 4.2511 4.9307 -1.9174 14 6 3.7200 5.0637 -3.3430 15 6 2.7202 6.2267 -3.4668 16 6 1.6125 5.9763 -2.4704 17 1 1.2435 4.9595 -2.6054 18 6 2.2282 6.0782 -1.0462 19 1 2.7395 7.0298 -0.9013 20 6 0.9504 6.0019 -0.2002 21 6 -0.0333 6.8667 -1.0377 22 7 0.4795 6.8806 -2.4300 23 6 -0.0209 7.6086 -3.4763 24 1 0.4377 7.5379 -4.4515 25 6 -1.1176 8.4374 -3.2836 26 7 -1.6763 8.5239 -2.0950 27 14 -1.8007 9.4298 -4.7111 28 1 -0.9996 9.1575 -5.9314 29 1 -3.2147 9.0442 -4.9504 30 1 -1.7305 10.8771 -4.3862 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.7882 -0.5715 -0.0083 37 1 6.2234 -0.2484 0.0030 38 1 7.1761 2.0195 0.0124 39 1 5.6997 3.9825 0.0121 40 1 4.9304 5.7576 -1.7101 41 1 4.7940 3.9900 -1.8249 42 1 3.2236 4.1355 -3.6262 43 1 4.5564 5.2396 -4.0196 44 1 2.3106 6.2575 -4.4765 45 1 3.2177 7.1692 -3.2388 46 1 1.1092 6.4364 0.7868 47 1 0.5960 4.9743 -0.1202 48 1 -0.0650 7.8821 -0.6426 49 1 -1.0303 6.4268 -1.0127 50 1 -2.4425 9.1034 -1.9602 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049876840.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:16 Heat of formation + Delta-G solvation = -25.103113 kcal Electronic energy + Delta-G solvation = -31755.986575 eV Core-core repulsion = 27748.788632 eV Total energy + Delta-G solvation = -4007.197943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.99017 -40.89939 -39.15347 -38.32483 -36.91458 -34.33190 -33.89667 -32.96526 -32.20842 -30.80316 -30.37679 -29.68518 -26.58423 -26.25887 -25.06092 -24.10790 -22.93391 -22.58529 -22.36332 -21.44425 -20.48260 -19.03517 -18.62742 -17.69697 -17.39374 -17.16020 -16.91427 -16.66836 -16.34990 -15.92354 -15.73378 -15.53129 -15.40986 -14.94332 -14.84737 -14.46482 -14.32867 -14.25040 -13.92931 -13.88911 -13.45309 -13.44344 -13.17029 -13.02822 -12.88757 -12.83793 -12.74804 -12.56118 -12.20881 -12.09263 -12.00339 -11.87750 -11.80030 -11.73976 -11.69768 -11.57677 -11.45561 -10.78994 -10.48703 -9.91481 -9.56624 -9.20036 -8.93467 -7.84967 -5.22701 0.05396 0.43690 1.45032 1.47052 1.57296 1.68202 2.00073 2.22510 2.49691 2.77345 3.30497 3.33536 3.54147 3.82842 3.87248 3.95732 3.99030 3.99141 4.03404 4.06787 4.18326 4.23301 4.26313 4.31150 4.33193 4.44338 4.51825 4.52808 4.55827 4.64404 4.77417 4.78377 4.84898 4.87188 4.92252 5.00762 5.07830 5.11347 5.14004 5.25006 5.27753 5.37191 5.41752 5.46817 5.50771 5.55742 5.59970 5.70274 5.82717 6.15784 6.39994 6.52984 7.03455 7.21007 7.73421 8.44280 9.27244 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003319 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.472931 B = 8434.120820 C = 9303.138197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.338 6.338 4 C 0.149 3.851 5 C -0.216 4.216 6 C -0.053 4.053 7 C -0.154 4.154 8 C -0.054 4.054 9 C -0.187 4.187 10 C 0.562 3.438 11 O -0.569 6.569 12 N -0.595 5.595 13 C 0.100 3.900 14 C -0.119 4.119 15 C -0.109 4.109 16 C 0.156 3.844 17 H -0.010 1.010 18 C 0.132 3.868 19 H 0.085 0.915 20 C -0.110 4.110 21 C 0.185 3.815 22 N -0.611 5.611 23 C -0.233 4.233 24 H 0.091 0.909 25 C -0.070 4.070 26 N -0.956 5.956 27 Si 0.982 3.018 28 H -0.260 1.260 29 H -0.296 1.296 30 H -0.291 1.291 31 H 0.048 0.952 32 H 0.110 0.890 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.153 0.847 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.053 0.947 43 H 0.115 0.885 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.029 0.971 49 H -0.003 1.003 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.079 -19.760 1.672 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.252 6.252 4 C 0.102 3.898 5 C -0.234 4.234 6 C -0.070 4.070 7 C -0.172 4.172 8 C -0.072 4.072 9 C -0.191 4.191 10 C 0.352 3.648 11 O -0.449 6.449 12 N -0.327 5.327 13 C -0.021 4.021 14 C -0.158 4.158 15 C -0.148 4.148 16 C 0.048 3.952 17 H 0.007 0.993 18 C 0.026 3.974 19 H 0.103 0.897 20 C -0.149 4.149 21 C 0.060 3.940 22 N -0.335 5.335 23 C -0.362 4.362 24 H 0.108 0.892 25 C -0.263 4.263 26 N -0.605 5.605 27 Si 0.810 3.190 28 H -0.184 1.184 29 H -0.223 1.223 30 H -0.218 1.218 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.171 0.829 37 H 0.183 0.817 38 H 0.183 0.817 39 H 0.167 0.833 40 H 0.112 0.888 41 H 0.128 0.872 42 H 0.072 0.928 43 H 0.133 0.867 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.047 0.953 49 H 0.015 0.985 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 20.290 -19.446 2.057 28.179 hybrid contribution -1.656 0.767 -0.298 1.849 sum 18.634 -18.679 1.759 26.443 Atomic orbital electron populations 1.21820 0.92857 1.04122 1.02238 1.23092 0.96164 0.80488 1.02861 1.86193 1.19614 1.31760 1.87643 1.19277 0.82943 0.93459 0.94132 1.21497 0.94957 0.97697 1.09265 1.21569 0.93753 0.98864 0.92864 1.21398 1.01473 0.91333 1.03014 1.21368 0.89280 1.01494 0.95072 1.19284 0.94955 0.90295 1.14584 1.18607 0.83429 0.82406 0.80397 1.90758 1.36346 1.78578 1.39213 1.47995 1.29449 1.23102 1.32151 1.22245 0.87804 1.04965 0.87066 1.21878 0.99599 0.97387 0.96899 1.21397 0.95305 0.99509 0.98569 1.20890 0.88203 0.91452 0.94703 0.99298 1.22004 0.89663 0.88864 0.96844 0.89696 1.22613 0.95012 0.99775 0.97460 1.21413 0.92972 0.96192 0.83436 1.44352 1.32092 1.50303 1.06795 1.19477 1.09687 1.17364 0.89643 0.89169 1.25737 0.99141 1.01826 0.99585 1.70200 1.24923 1.42679 1.22671 0.84958 0.77566 0.77744 0.78756 1.18417 1.22325 1.21787 0.93304 0.87113 0.93090 0.90025 0.90148 0.82916 0.81703 0.81716 0.83309 0.88770 0.87185 0.92820 0.86650 0.92413 0.91179 0.91820 0.92234 0.95266 0.98461 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 10.28 71.98 0.74 -2.41 16 2 C 0.05 0.97 5.46 71.98 0.39 1.36 16 3 O -0.34 -10.52 9.31 -85.67 -0.80 -11.32 16 4 C 0.15 3.96 6.68 22.84 0.15 4.11 16 5 C -0.22 -3.68 9.03 22.34 0.20 -3.47 16 6 C -0.05 -0.61 10.03 22.30 0.22 -0.39 16 7 C -0.15 -1.84 10.02 22.24 0.22 -1.62 16 8 C -0.05 -0.98 7.47 22.52 0.17 -0.81 16 9 C -0.19 -5.21 4.99 -20.01 -0.10 -5.31 16 10 C 0.56 20.57 6.81 86.70 0.59 21.16 16 11 O -0.57 -26.05 13.70 -0.01 0.00 -26.05 16 12 N -0.59 -20.02 2.91 -794.85 -2.31 -22.33 16 13 C 0.10 2.27 5.52 86.02 0.47 2.74 16 14 C -0.12 -2.87 5.92 30.79 0.18 -2.68 16 15 C -0.11 -3.75 5.45 30.26 0.16 -3.58 16 16 C 0.16 6.97 2.58 45.50 0.12 7.08 16 17 H -0.01 -0.52 8.04 -2.38 -0.02 -0.54 16 18 C 0.13 5.42 3.32 46.14 0.15 5.58 16 19 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 20 C -0.11 -5.32 4.94 31.59 0.16 -5.17 16 21 C 0.19 10.46 5.47 86.87 0.48 10.94 16 22 N -0.61 -33.73 3.35 -670.52 -2.25 -35.97 16 23 C -0.23 -13.45 9.94 84.03 0.84 -12.62 16 24 H 0.09 4.87 7.31 -2.91 -0.02 4.85 16 25 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 26 N -0.96 -60.57 10.46 21.65 0.23 -60.35 16 27 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 28 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 29 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 30 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.08 1.26 7.65 -2.39 -0.02 1.24 16 35 H 0.08 1.27 7.67 -2.39 -0.02 1.25 16 36 H 0.15 1.82 6.30 -2.91 -0.02 1.80 16 37 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 38 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 39 H 0.15 2.16 7.33 -2.91 -0.02 2.14 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.11 1.98 4.88 -2.39 -0.01 1.97 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.06 2.07 7.70 -2.39 -0.02 2.05 16 45 H 0.07 2.32 8.12 -2.39 -0.02 2.31 16 46 H 0.06 2.99 8.14 -2.38 -0.02 2.97 16 47 H 0.06 3.11 6.37 -2.39 -0.02 3.09 16 48 H 0.03 1.78 7.18 -2.39 -0.02 1.76 16 49 H 0.00 -0.18 7.81 -2.39 -0.02 -0.20 16 50 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -84.10 385.95 3.45 -80.65 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.93 Total: 15.08 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 5.62 Total: 11.23 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -4.33 Total: -118.65 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.80 Total: -37.37 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -84.10 3.45 -80.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876840.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.548 kcal (2) G-P(sol) polarization free energy of solvation -84.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds