Wall clock time and date at job start Wed Apr 1 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42890 * 109.47448 * 2 1 4 4 C 1.35712 * 117.00253 * 179.97438 * 3 2 1 5 5 C 1.38996 * 119.91405 * 179.97438 * 4 3 2 6 6 C 1.37707 * 120.08960 * 179.97438 * 5 4 3 7 7 C 1.39732 * 119.90904 * 0.02562 * 6 5 4 8 8 C 1.47598 * 120.08860 * 180.02562 * 7 6 5 9 9 O 1.21589 * 119.99709 * 27.57950 * 8 7 6 10 10 N 1.34771 * 120.00383 * 207.57267 * 8 7 6 11 11 C 1.47848 * 122.22841 * 5.86149 * 10 8 7 12 12 C 1.52721 * 111.01740 * 127.44048 * 11 10 8 13 13 C 1.53867 * 111.52163 * 48.56443 * 12 11 10 14 14 C 1.51084 * 107.34599 * 303.06989 * 13 12 11 15 15 H 1.08995 * 108.73633 * 308.53109 * 14 13 12 16 16 C 1.45710 * 122.21815 * 185.88171 * 10 8 7 17 17 H 1.09004 * 111.68567 * 119.22311 * 16 10 8 18 18 C 1.53219 * 115.85962 * 350.00933 * 16 10 8 19 19 C 1.55479 * 101.27648 * 206.67341 * 18 16 10 20 20 N 1.45029 * 119.19423 * 183.25633 * 14 13 12 21 21 C 1.36930 * 126.56149 * 28.75095 * 20 14 13 22 22 H 1.07996 * 119.99957 * 352.74298 * 21 20 14 23 23 C 1.38812 * 119.99822 * 172.75124 * 21 20 14 24 24 N 1.31614 * 120.00433 * 352.61621 * 23 21 20 25 25 Si 1.86804 * 120.00016 * 172.61960 * 23 21 20 26 26 H 1.48498 * 109.47211 * 94.98393 * 25 23 21 27 27 H 1.48505 * 109.46952 * 214.98804 * 25 23 21 28 28 H 1.48506 * 109.46948 * 334.98423 * 25 23 21 29 29 C 1.39730 * 119.82527 * 0.28450 * 7 6 5 30 30 C 1.37706 * 119.91063 * 359.39376 * 29 7 6 31 31 H 1.08998 * 109.47678 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47426 * 300.00639 * 1 2 3 33 33 H 1.09009 * 109.46898 * 60.00049 * 1 2 3 34 34 H 1.09000 * 109.46913 * 239.99423 * 2 1 3 35 35 H 1.09004 * 109.46441 * 119.99993 * 2 1 3 36 36 H 1.08004 * 119.95603 * 359.97438 * 5 4 3 37 37 H 1.07999 * 120.04280 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.16127 * 7.06117 * 11 10 8 39 39 H 1.09003 * 109.16529 * 247.82235 * 11 10 8 40 40 H 1.08994 * 109.07302 * 169.09314 * 12 11 10 41 41 H 1.09003 * 109.06790 * 288.04522 * 12 11 10 42 42 H 1.09004 * 109.88197 * 62.53015 * 13 12 11 43 43 H 1.09001 * 109.88495 * 183.61279 * 13 12 11 44 44 H 1.08995 * 110.77799 * 88.88456 * 18 16 10 45 45 H 1.09001 * 111.60373 * 324.81942 * 18 16 10 46 46 H 1.08995 * 109.96280 * 263.67757 * 19 18 16 47 47 H 1.09002 * 109.96220 * 142.43698 * 19 18 16 48 48 H 0.96997 * 120.00339 * 180.02562 * 24 23 21 49 49 H 1.08000 * 120.04501 * 179.71842 * 29 7 6 50 50 H 1.08007 * 119.95899 * 180.34386 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 0.0005 5 6 3.8811 2.8102 0.0000 6 6 5.2458 2.9948 0.0011 7 6 6.0986 1.8879 0.0022 8 6 7.5619 2.0811 0.0039 9 8 8.0417 3.0861 0.4920 10 7 8.3661 1.1437 -0.5353 11 6 7.8334 -0.0340 -1.2531 12 6 8.4698 -0.1671 -2.6351 13 6 10.0021 -0.0471 -2.5648 14 6 10.3208 1.2814 -1.9197 15 1 9.7719 2.0649 -2.4420 16 6 9.8185 1.2233 -0.4492 17 1 10.2380 0.3682 0.0808 18 6 10.3852 2.5457 0.0778 19 6 11.7871 2.5650 -0.5942 20 7 11.7061 1.6909 -1.7905 21 6 12.7412 1.3378 -2.6144 22 1 12.5879 0.6006 -3.3886 23 6 13.9877 1.9274 -2.4544 24 7 14.1398 2.9267 -1.6115 25 14 15.4494 1.3025 -3.4355 26 1 15.6107 2.1249 -4.6614 27 1 16.6789 1.4001 -2.6084 28 1 15.2204 -0.1145 -3.8166 29 6 5.5625 0.5975 -0.0039 30 6 4.1968 0.4213 0.0018 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5139 0.8901 36 1 3.2213 3.6652 -0.0012 37 1 5.6563 3.9937 0.0011 38 1 6.7545 0.0731 -1.3649 39 1 8.0455 -0.9324 -0.6736 40 1 8.2075 -1.1377 -3.0559 41 1 8.0805 0.6179 -3.2835 42 1 10.4103 -0.8589 -1.9628 43 1 10.4232 -0.0816 -3.5697 44 1 10.4733 2.5231 1.1640 45 1 9.7855 3.3966 -0.2455 46 1 12.5367 2.1807 0.0974 47 1 12.0426 3.5817 -0.8929 48 1 15.0107 3.3388 -1.4999 49 1 6.2184 -0.2605 -0.0077 50 1 3.7816 -0.5757 0.0027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049876841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:19 Heat of formation + Delta-G solvation = 9.000200 kcal Electronic energy + Delta-G solvation = -30748.013752 eV Core-core repulsion = 26742.294640 eV Total energy + Delta-G solvation = -4005.719113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.90262 -40.03517 -38.17300 -37.05716 -35.48467 -32.70308 -32.58357 -32.05260 -31.23451 -30.13640 -28.69911 -28.16068 -25.15306 -24.60419 -24.26450 -22.95903 -22.19905 -21.42528 -20.77218 -19.70944 -19.25232 -18.51249 -17.04052 -16.53455 -16.47594 -16.25243 -15.42304 -15.17174 -14.97475 -14.63718 -14.62274 -14.20133 -13.89555 -13.80649 -13.72540 -13.54508 -13.23904 -13.14728 -12.92095 -12.53987 -12.43240 -12.23696 -12.17408 -12.06270 -11.78095 -11.54342 -11.22166 -11.10972 -10.93489 -10.82836 -10.64253 -10.46891 -10.42320 -10.09166 -9.92894 -9.81080 -9.56413 -9.25275 -9.01509 -8.55526 -8.44914 -8.16828 -6.77093 -5.67469 -3.01731 0.81794 1.07465 2.77769 2.88965 3.16270 3.41940 3.46943 3.49176 3.69337 4.37318 4.45530 4.51054 4.52992 4.54057 4.63049 4.77511 4.84390 4.97492 5.03336 5.11633 5.19555 5.27779 5.31510 5.38755 5.41935 5.43876 5.56120 5.60262 5.63102 5.71589 5.79710 5.89189 5.90377 5.98146 6.01417 6.09411 6.20277 6.28848 6.32436 6.41943 6.43174 6.59124 6.74642 6.82566 6.94470 7.03908 7.23718 7.57272 7.70719 7.74952 7.86982 8.28424 8.45083 9.21855 9.86683 10.55867 11.44944 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.002370 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.534041 B =11813.096258 C =12524.818302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.148 3.852 5 C -0.160 4.160 6 C -0.023 4.023 7 C -0.163 4.163 8 C 0.562 3.438 9 O -0.528 6.528 10 N -0.594 5.594 11 C 0.089 3.911 12 C -0.130 4.130 13 C -0.115 4.115 14 C 0.158 3.842 15 H 0.019 0.981 16 C 0.116 3.884 17 H 0.081 0.919 18 C -0.132 4.132 19 C 0.170 3.830 20 N -0.592 5.592 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.917 5.917 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.281 1.281 29 C -0.060 4.060 30 C -0.219 4.219 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.090 0.910 46 H 0.037 0.963 47 H 0.054 0.946 48 H 0.252 0.748 49 H 0.145 0.855 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.201 -8.711 3.206 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.228 6.228 4 C 0.102 3.898 5 C -0.179 4.179 6 C -0.041 4.041 7 C -0.167 4.167 8 C 0.351 3.649 9 O -0.406 6.406 10 N -0.326 5.326 11 C -0.033 4.033 12 C -0.169 4.169 13 C -0.154 4.154 14 C 0.049 3.951 15 H 0.036 0.964 16 C 0.012 3.988 17 H 0.099 0.901 18 C -0.171 4.171 19 C 0.046 3.954 20 N -0.316 5.316 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.563 5.563 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.078 4.078 30 C -0.238 4.238 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.163 0.837 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.856 -7.964 3.444 27.273 hybrid contribution 0.943 -0.710 -0.557 1.305 sum -24.914 -8.674 2.887 26.538 Atomic orbital electron populations 1.21784 0.92625 1.02958 1.03613 1.22835 0.95989 0.81800 1.01648 1.86038 1.19092 1.29598 1.88054 1.19234 0.82213 0.94216 0.94097 1.20392 0.94989 0.94909 1.07590 1.21074 0.91471 0.99093 0.92499 1.19985 0.93768 0.94025 1.08909 1.18114 0.85684 0.82740 0.78359 1.90781 1.75659 1.27686 1.46483 1.47836 1.07077 1.23601 1.54115 1.22407 0.99501 0.87972 0.93420 1.21919 0.96887 1.01979 0.96076 1.21423 0.93393 0.98729 1.01860 1.20763 0.87858 0.94037 0.92484 0.96391 1.22421 0.77033 0.99727 0.99579 0.90121 1.23001 0.98286 0.96241 0.99555 1.21733 0.90803 0.95792 0.87097 1.44065 1.02076 1.55904 1.29600 1.18966 0.88067 1.18116 1.10383 0.90459 1.24816 0.97978 0.97897 0.99726 1.69959 1.22728 1.24533 1.39123 0.86161 0.82643 0.78174 0.79123 1.21710 1.21694 1.20693 1.21601 0.94746 0.97005 0.94462 1.21174 0.94006 0.98187 1.10421 0.90275 0.91474 0.91443 0.91770 0.91815 0.84622 0.84083 0.88528 0.91448 0.90952 0.91762 0.91846 0.91465 0.92318 0.89176 0.94434 0.92757 0.93759 0.83730 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 10.28 37.16 0.38 -0.28 16 2 C 0.05 0.31 5.45 37.16 0.20 0.51 16 3 O -0.31 -2.88 10.12 -18.84 -0.19 -3.07 16 4 C 0.15 1.48 6.70 -39.02 -0.26 1.22 16 5 C -0.16 -1.68 9.97 -39.49 -0.39 -2.07 16 6 C -0.02 -0.27 9.58 -39.22 -0.38 -0.65 16 7 C -0.16 -2.14 5.56 -104.96 -0.58 -2.72 16 8 C 0.56 9.28 7.48 -12.44 -0.09 9.19 16 9 O -0.53 -10.49 13.34 5.29 0.07 -10.42 16 10 N -0.59 -9.42 2.91 -165.31 -0.48 -9.90 16 11 C 0.09 1.06 4.70 -3.45 -0.02 1.04 16 12 C -0.13 -1.65 5.93 -26.42 -0.16 -1.81 16 13 C -0.12 -1.97 5.41 -27.24 -0.15 -2.12 16 14 C 0.16 3.33 2.59 -68.35 -0.18 3.16 16 15 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 16 C 0.12 2.23 3.32 -66.91 -0.22 2.01 16 17 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 18 C -0.13 -2.86 5.05 -25.30 -0.13 -2.99 16 19 C 0.17 4.36 5.45 -1.69 -0.01 4.35 16 20 N -0.59 -15.32 3.34 -163.27 -0.55 -15.87 16 21 C -0.23 -6.31 9.95 -15.06 -0.15 -6.46 16 22 H 0.08 2.06 7.30 -52.49 -0.38 1.67 16 23 C -0.01 -0.21 5.45 -17.43 -0.10 -0.31 16 24 N -0.92 -27.49 10.66 55.49 0.59 -26.90 16 25 Si 0.91 22.25 29.56 -169.99 -5.02 17.23 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 C -0.06 -0.61 7.50 -39.22 -0.29 -0.91 16 30 C -0.22 -1.96 9.01 -39.50 -0.36 -2.32 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 34 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 35 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 36 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.14 1.70 7.88 -52.49 -0.41 1.28 16 38 H 0.10 0.95 4.17 -51.93 -0.22 0.74 16 39 H 0.07 0.68 8.01 -51.93 -0.42 0.27 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 43 H 0.07 1.21 7.75 -51.93 -0.40 0.80 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 2.06 6.04 -51.93 -0.31 1.74 16 46 H 0.04 1.03 7.81 -51.93 -0.41 0.62 16 47 H 0.05 1.54 7.32 -51.93 -0.38 1.16 16 48 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.15 1.26 5.19 -52.49 -0.27 0.98 16 50 H 0.13 0.83 6.28 -52.48 -0.33 0.50 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -33.47 383.23 -10.36 -43.83 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.68 Total: 0.48 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.87 Total: -1.16 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.44 Total: -52.67 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.12 Total: -13.48 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.47 -10.36 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.830 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds