Wall clock time and date at job start Wed Apr 1 2020 02:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47299 * 2 1 4 4 C 1.35709 * 117.00439 * 179.97438 * 3 2 1 5 5 C 1.38994 * 119.91324 * 179.97438 * 4 3 2 6 6 C 1.37703 * 120.08726 * 179.97438 * 5 4 3 7 7 C 1.39732 * 119.91207 * 0.27667 * 6 5 4 8 8 C 1.47598 * 120.08830 * 179.71905 * 7 6 5 9 9 O 1.21583 * 119.99992 * 33.68238 * 8 7 6 10 10 N 1.34776 * 120.00164 * 213.67553 * 8 7 6 11 11 C 1.46801 * 119.57782 * 5.35977 * 10 8 7 12 12 C 1.53465 * 107.59320 * 127.94325 * 11 10 8 13 13 C 1.52726 * 108.44425 * 58.07998 * 12 11 10 14 14 C 1.53013 * 110.80431 * 296.23287 * 13 12 11 15 15 H 1.08995 * 111.38670 * 290.27145 * 14 13 12 16 16 C 1.45122 * 119.58166 * 185.08505 * 10 8 7 17 17 H 1.09007 * 109.96698 * 348.07505 * 16 10 8 18 18 C 1.54423 * 111.60637 * 111.35337 * 16 10 8 19 19 C 1.54569 * 102.44638 * 156.58639 * 18 16 10 20 20 N 1.46011 * 107.33400 * 338.32382 * 19 18 16 21 21 C 1.36927 * 125.65270 * 177.31115 * 20 19 18 22 22 H 1.08004 * 120.00097 * 187.94287 * 21 20 19 23 23 C 1.38809 * 120.00251 * 7.93856 * 21 20 19 24 24 N 1.31619 * 120.00240 * 352.90054 * 23 21 20 25 25 Si 1.86805 * 120.00298 * 172.89758 * 23 21 20 26 26 H 1.48504 * 109.46862 * 94.97972 * 25 23 21 27 27 H 1.48495 * 109.47522 * 214.98115 * 25 23 21 28 28 H 1.48502 * 109.46917 * 334.98207 * 25 23 21 29 29 C 1.39733 * 119.82382 * 359.40403 * 7 6 5 30 30 C 1.37699 * 119.90820 * 0.61844 * 29 7 6 31 31 H 1.08992 * 109.47603 * 300.00278 * 1 2 3 32 32 H 1.09005 * 109.46924 * 60.00127 * 1 2 3 33 33 H 1.08997 * 109.47029 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47962 * 239.99668 * 2 1 3 35 35 H 1.09005 * 109.46924 * 119.99873 * 2 1 3 36 36 H 1.07999 * 119.95534 * 359.97438 * 5 4 3 37 37 H 1.07998 * 120.04316 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.83600 * 247.46140 * 11 10 8 39 39 H 1.09004 * 109.83246 * 8.35627 * 11 10 8 40 40 H 1.09005 * 109.64232 * 177.77314 * 12 11 10 41 41 H 1.09003 * 109.64291 * 298.39006 * 12 11 10 42 42 H 1.09004 * 109.21119 * 56.57617 * 13 12 11 43 43 H 1.09005 * 109.21048 * 175.93606 * 13 12 11 44 44 H 1.08998 * 110.81263 * 274.82750 * 18 16 10 45 45 H 1.09005 * 110.80978 * 38.35003 * 18 16 10 46 46 H 1.08999 * 109.88896 * 97.73853 * 19 18 16 47 47 H 1.08997 * 109.88871 * 218.76191 * 19 18 16 48 48 H 0.96995 * 120.00206 * 179.97438 * 24 23 21 49 49 H 1.08004 * 120.04880 * 180.32183 * 29 7 6 50 50 H 1.08006 * 119.95848 * 179.70656 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5251 0.0005 5 6 3.8810 2.8104 0.0000 6 6 5.2456 2.9950 0.0011 7 6 6.0985 1.8882 -0.0031 8 6 7.5617 2.0816 -0.0083 9 8 8.0517 3.0293 0.5749 10 7 8.3547 1.2077 -0.6592 11 6 7.7488 0.1352 -1.4578 12 6 8.3764 0.1876 -2.8572 13 6 9.8885 0.0270 -2.7150 14 6 10.4883 1.1975 -1.9330 15 1 10.4513 2.1215 -2.5099 16 6 9.7967 1.3424 -0.5667 17 1 10.0529 2.3032 -0.1201 18 6 10.4260 0.1822 0.2350 19 6 11.8805 0.1664 -0.2879 20 7 11.8815 0.8253 -1.5909 21 6 12.9863 1.0629 -2.3642 22 1 12.9026 1.6702 -3.2533 23 6 14.2138 0.5233 -2.0053 24 7 14.3480 -0.0979 -0.8527 25 14 15.6754 0.6786 -3.1582 26 1 16.4837 1.8643 -2.7757 27 1 16.5135 -0.5435 -3.0626 28 1 15.1910 0.8387 -4.5528 29 6 5.5625 0.5978 0.0042 30 6 4.1968 0.4216 0.0026 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.2211 3.6653 -0.0012 37 1 5.6560 3.9939 0.0011 38 1 7.9543 -0.8307 -0.9963 39 1 6.6721 0.2898 -1.5282 40 1 7.9777 -0.6223 -3.4682 41 1 8.1522 1.1469 -3.3237 42 1 10.1025 -0.9032 -2.1885 43 1 10.3401 -0.0101 -3.7064 44 1 10.4011 0.3921 1.3043 45 1 9.9241 -0.7594 0.0122 46 1 12.5282 0.7082 0.4013 47 1 12.2264 -0.8621 -0.3906 48 1 15.2057 -0.4753 -0.6021 49 1 6.2184 -0.2603 0.0062 50 1 3.7816 -0.5755 0.0034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049876843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:25 Heat of formation + Delta-G solvation = -4.578743 kcal Electronic energy + Delta-G solvation = -30672.527904 eV Core-core repulsion = 26666.219964 eV Total energy + Delta-G solvation = -4006.307940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.93975 -40.04652 -38.31805 -37.15953 -35.37027 -32.68834 -32.37694 -32.11235 -31.26231 -30.16069 -28.87704 -28.14505 -25.19339 -24.56779 -24.23197 -23.04662 -22.36855 -21.77899 -20.41340 -19.94777 -18.75319 -18.17000 -17.39538 -16.90024 -16.53698 -16.38863 -15.72806 -15.00376 -14.82916 -14.72985 -14.43748 -14.24709 -13.96545 -13.85473 -13.70922 -13.52710 -13.32686 -13.07318 -12.89670 -12.67706 -12.41104 -12.24130 -12.10670 -11.98755 -11.91123 -11.41414 -11.19510 -11.14887 -10.99914 -10.85320 -10.74122 -10.64720 -10.45139 -10.09265 -10.08093 -9.67065 -9.59270 -9.55420 -9.25634 -8.59754 -8.49592 -8.21776 -6.84245 -5.72309 -3.05516 0.80718 1.05795 2.76803 2.82664 3.15404 3.40393 3.46122 3.47870 3.62358 4.37301 4.45628 4.48765 4.51204 4.53159 4.62948 4.77585 4.90130 4.98971 5.07739 5.13701 5.21196 5.28573 5.31540 5.39496 5.40741 5.47374 5.55810 5.59194 5.64913 5.68034 5.70692 5.86117 5.90615 5.97216 6.00972 6.12896 6.15844 6.23320 6.33308 6.36849 6.39418 6.51327 6.62026 6.76432 6.99373 7.02694 7.08315 7.54892 7.63045 7.64402 7.83199 8.25309 8.36023 9.22253 9.81102 10.47474 11.39144 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028003 B = 0.002286 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.652140 B =12244.722145 C =12539.981060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.149 3.851 5 C -0.160 4.160 6 C -0.024 4.024 7 C -0.163 4.163 8 C 0.556 3.444 9 O -0.540 6.540 10 N -0.586 5.586 11 C 0.092 3.908 12 C -0.134 4.134 13 C -0.129 4.129 14 C 0.156 3.844 15 H 0.059 0.941 16 C 0.130 3.870 17 H 0.103 0.897 18 C -0.151 4.151 19 C 0.181 3.819 20 N -0.596 5.596 21 C -0.228 4.228 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.919 5.919 25 Si 0.910 3.090 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.281 1.281 29 C -0.050 4.050 30 C -0.219 4.219 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.044 0.956 47 H 0.046 0.954 48 H 0.252 0.748 49 H 0.140 0.860 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.980 -2.466 0.721 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.228 6.228 4 C 0.103 3.897 5 C -0.179 4.179 6 C -0.043 4.043 7 C -0.167 4.167 8 C 0.345 3.655 9 O -0.418 6.418 10 N -0.317 5.317 11 C -0.030 4.030 12 C -0.173 4.173 13 C -0.169 4.169 14 C 0.047 3.953 15 H 0.077 0.923 16 C 0.026 3.974 17 H 0.121 0.879 18 C -0.191 4.191 19 C 0.055 3.945 20 N -0.320 5.320 21 C -0.356 4.356 22 H 0.095 0.905 23 C -0.202 4.202 24 N -0.566 5.566 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.206 1.206 29 C -0.069 4.069 30 C -0.238 4.238 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.158 0.842 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -26.581 -1.905 1.039 26.669 hybrid contribution 0.956 -0.412 -0.598 1.201 sum -25.624 -2.317 0.441 25.733 Atomic orbital electron populations 1.21781 0.92614 1.02979 1.03597 1.22844 0.95996 0.81755 1.01701 1.86038 1.19058 1.29646 1.88029 1.19224 0.82240 0.94183 0.94023 1.20371 0.94936 0.94921 1.07678 1.21033 0.91521 0.98906 0.92825 1.19875 0.93507 0.94122 1.09169 1.18266 0.86089 0.82117 0.79045 1.90779 1.75821 1.30319 1.44876 1.47483 1.06664 1.29507 1.48030 1.22390 0.98218 0.90544 0.91893 1.21950 0.97774 1.01953 0.95574 1.22107 0.92433 1.00850 1.01525 1.21286 0.86077 0.95536 0.92402 0.92282 1.21705 0.76959 1.00673 0.98034 0.87930 1.23133 0.99681 0.97196 0.99057 1.20981 0.88882 0.97996 0.86597 1.44442 1.00326 1.68405 1.18874 1.19019 0.85880 1.26193 1.04515 0.90472 1.24830 0.97763 1.00198 0.97418 1.69977 1.23848 1.42236 1.20492 0.86139 0.82592 0.77051 0.80229 1.21679 1.21680 1.20641 1.21398 0.94689 0.96708 0.94073 1.21170 0.93941 0.98257 1.10382 0.91469 0.91457 0.90258 0.91733 0.91777 0.84614 0.84246 0.91202 0.88824 0.91338 0.91779 0.91856 0.92086 0.92061 0.92261 0.93795 0.93617 0.93741 0.84244 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 37.15 0.38 -0.27 16 2 C 0.05 0.30 5.45 37.15 0.20 0.50 16 3 O -0.31 -2.82 10.12 -18.83 -0.19 -3.01 16 4 C 0.15 1.46 6.70 -39.02 -0.26 1.20 16 5 C -0.16 -1.62 9.97 -39.50 -0.39 -2.01 16 6 C -0.02 -0.28 9.60 -39.22 -0.38 -0.66 16 7 C -0.16 -2.09 5.30 -104.96 -0.56 -2.65 16 8 C 0.56 9.05 7.36 -12.44 -0.09 8.96 16 9 O -0.54 -10.77 16.11 5.29 0.09 -10.69 16 10 N -0.59 -9.19 2.74 -166.44 -0.46 -9.64 16 11 C 0.09 1.13 4.43 -3.64 -0.02 1.11 16 12 C -0.13 -1.76 6.11 -26.63 -0.16 -1.92 16 13 C -0.13 -2.25 5.10 -26.87 -0.14 -2.39 16 14 C 0.16 3.18 3.58 -66.56 -0.24 2.94 16 15 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 16 C 0.13 2.48 3.12 -67.50 -0.21 2.27 16 17 H 0.10 2.22 6.93 -51.93 -0.36 1.86 16 18 C -0.15 -2.92 6.08 -25.16 -0.15 -3.08 16 19 C 0.18 4.38 5.16 -3.48 -0.02 4.37 16 20 N -0.60 -14.93 2.88 -163.30 -0.47 -15.40 16 21 C -0.23 -6.27 10.27 -15.06 -0.15 -6.43 16 22 H 0.08 2.07 7.84 -52.48 -0.41 1.65 16 23 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 24 N -0.92 -26.88 10.37 55.49 0.58 -26.31 16 25 Si 0.91 22.08 29.56 -169.99 -5.02 17.06 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 C -0.05 -0.52 7.31 -39.22 -0.29 -0.80 16 30 C -0.22 -1.95 9.01 -39.50 -0.36 -2.31 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 35 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 36 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.14 1.59 7.98 -52.49 -0.42 1.17 16 38 H 0.07 0.80 7.36 -51.93 -0.38 0.41 16 39 H 0.09 0.96 4.35 -51.93 -0.23 0.73 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.17 7.13 -51.93 -0.37 0.80 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.04 6.83 -51.93 -0.35 0.69 16 46 H 0.04 1.19 7.54 -51.93 -0.39 0.80 16 47 H 0.05 1.21 7.36 -51.93 -0.38 0.83 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.14 1.27 5.79 -52.48 -0.30 0.97 16 50 H 0.13 0.85 6.28 -52.48 -0.33 0.52 16 LS Contribution 385.59 15.07 5.81 5.81 Total: -1.00 -32.56 385.59 -10.26 -42.81 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.66 Total: 0.79 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.92 Total: -1.42 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.35 Total: -51.35 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.11 Total: -13.70 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.56 -10.26 -42.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.236 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds