Wall clock time and date at job start Wed Apr 1 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47299 * 2 1 4 4 C 1.35709 * 117.00439 * 179.97438 * 3 2 1 5 5 C 1.38994 * 119.91324 * 179.97438 * 4 3 2 6 6 C 1.37703 * 120.08726 * 179.97438 * 5 4 3 7 7 C 1.39732 * 119.91207 * 0.27667 * 6 5 4 8 8 C 1.47598 * 120.08830 * 179.71905 * 7 6 5 9 9 O 1.21583 * 119.99992 * 33.68238 * 8 7 6 10 10 N 1.34776 * 120.00164 * 213.67553 * 8 7 6 11 11 C 1.46801 * 119.57782 * 5.35977 * 10 8 7 12 12 C 1.53465 * 107.59320 * 127.94325 * 11 10 8 13 13 C 1.52726 * 108.44425 * 58.07998 * 12 11 10 14 14 C 1.53013 * 110.80431 * 296.23287 * 13 12 11 15 15 H 1.08995 * 111.38670 * 290.27145 * 14 13 12 16 16 C 1.45122 * 119.58166 * 185.08505 * 10 8 7 17 17 H 1.09007 * 109.96698 * 348.07505 * 16 10 8 18 18 C 1.54423 * 111.60637 * 111.35337 * 16 10 8 19 19 C 1.54569 * 102.44638 * 156.58639 * 18 16 10 20 20 N 1.46011 * 107.33400 * 338.32382 * 19 18 16 21 21 C 1.36927 * 125.65270 * 177.31115 * 20 19 18 22 22 H 1.08004 * 120.00097 * 187.94287 * 21 20 19 23 23 C 1.38809 * 120.00251 * 7.93856 * 21 20 19 24 24 N 1.31619 * 120.00240 * 352.90054 * 23 21 20 25 25 Si 1.86805 * 120.00298 * 172.89758 * 23 21 20 26 26 H 1.48504 * 109.46862 * 94.97972 * 25 23 21 27 27 H 1.48495 * 109.47522 * 214.98115 * 25 23 21 28 28 H 1.48502 * 109.46917 * 334.98207 * 25 23 21 29 29 C 1.39733 * 119.82382 * 359.40403 * 7 6 5 30 30 C 1.37699 * 119.90820 * 0.61844 * 29 7 6 31 31 H 1.08992 * 109.47603 * 300.00278 * 1 2 3 32 32 H 1.09005 * 109.46924 * 60.00127 * 1 2 3 33 33 H 1.08997 * 109.47029 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47962 * 239.99668 * 2 1 3 35 35 H 1.09005 * 109.46924 * 119.99873 * 2 1 3 36 36 H 1.07999 * 119.95534 * 359.97438 * 5 4 3 37 37 H 1.07998 * 120.04316 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.83600 * 247.46140 * 11 10 8 39 39 H 1.09004 * 109.83246 * 8.35627 * 11 10 8 40 40 H 1.09005 * 109.64232 * 177.77314 * 12 11 10 41 41 H 1.09003 * 109.64291 * 298.39006 * 12 11 10 42 42 H 1.09004 * 109.21119 * 56.57617 * 13 12 11 43 43 H 1.09005 * 109.21048 * 175.93606 * 13 12 11 44 44 H 1.08998 * 110.81263 * 274.82750 * 18 16 10 45 45 H 1.09005 * 110.80978 * 38.35003 * 18 16 10 46 46 H 1.08999 * 109.88896 * 97.73853 * 19 18 16 47 47 H 1.08997 * 109.88871 * 218.76191 * 19 18 16 48 48 H 0.96995 * 120.00206 * 179.97438 * 24 23 21 49 49 H 1.08004 * 120.04880 * 180.32183 * 29 7 6 50 50 H 1.08006 * 119.95848 * 179.70656 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5251 0.0005 5 6 3.8810 2.8104 0.0000 6 6 5.2456 2.9950 0.0011 7 6 6.0985 1.8882 -0.0031 8 6 7.5617 2.0816 -0.0083 9 8 8.0517 3.0293 0.5749 10 7 8.3547 1.2077 -0.6592 11 6 7.7488 0.1352 -1.4578 12 6 8.3764 0.1876 -2.8572 13 6 9.8885 0.0270 -2.7150 14 6 10.4883 1.1975 -1.9330 15 1 10.4513 2.1215 -2.5099 16 6 9.7967 1.3424 -0.5667 17 1 10.0529 2.3032 -0.1201 18 6 10.4260 0.1822 0.2350 19 6 11.8805 0.1664 -0.2879 20 7 11.8815 0.8253 -1.5909 21 6 12.9863 1.0629 -2.3642 22 1 12.9026 1.6702 -3.2533 23 6 14.2138 0.5233 -2.0053 24 7 14.3480 -0.0979 -0.8527 25 14 15.6754 0.6786 -3.1582 26 1 16.4837 1.8643 -2.7757 27 1 16.5135 -0.5435 -3.0626 28 1 15.1910 0.8387 -4.5528 29 6 5.5625 0.5978 0.0042 30 6 4.1968 0.4216 0.0026 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.2211 3.6653 -0.0012 37 1 5.6560 3.9939 0.0011 38 1 7.9543 -0.8307 -0.9963 39 1 6.6721 0.2898 -1.5282 40 1 7.9777 -0.6223 -3.4682 41 1 8.1522 1.1469 -3.3237 42 1 10.1025 -0.9032 -2.1885 43 1 10.3401 -0.0101 -3.7064 44 1 10.4011 0.3921 1.3043 45 1 9.9241 -0.7594 0.0122 46 1 12.5282 0.7082 0.4013 47 1 12.2264 -0.8621 -0.3906 48 1 15.2057 -0.4753 -0.6021 49 1 6.2184 -0.2603 0.0062 50 1 3.7816 -0.5755 0.0034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049876843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:24 Heat of formation + Delta-G solvation = -23.336856 kcal Electronic energy + Delta-G solvation = -30673.341317 eV Core-core repulsion = 26666.219964 eV Total energy + Delta-G solvation = -4007.121353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.05460 -40.97642 -39.63929 -38.12374 -36.88033 -34.29076 -33.75952 -32.93215 -32.03387 -31.30782 -30.46450 -29.63241 -26.65187 -26.07258 -25.10571 -24.02108 -23.46975 -22.72037 -21.96460 -21.41850 -19.80295 -19.21009 -18.81069 -18.51630 -17.43244 -17.04662 -16.84638 -16.73605 -16.22827 -15.93123 -15.75501 -15.51926 -15.08055 -15.04801 -14.61062 -14.44056 -14.33198 -14.17175 -14.13409 -13.78055 -13.68373 -13.48051 -13.20945 -13.08803 -12.93900 -12.83057 -12.64246 -12.60182 -12.33964 -12.26825 -12.06689 -11.95613 -11.76324 -11.64412 -11.58338 -11.48797 -11.20347 -10.87927 -10.69636 -10.03478 -9.68244 -9.21405 -8.89106 -7.86477 -5.21673 -0.06174 0.30352 1.44907 1.46156 1.55683 1.70340 1.91442 2.20383 2.49039 2.73657 3.30309 3.43997 3.58198 3.71295 3.86626 3.87264 3.94473 4.02152 4.10544 4.11900 4.12654 4.17515 4.24233 4.34916 4.39992 4.44147 4.53455 4.56073 4.57651 4.66146 4.77536 4.82901 4.88268 4.95262 4.97583 4.99974 5.05831 5.10072 5.17060 5.20340 5.31990 5.35333 5.35910 5.41286 5.53986 5.60461 5.65106 5.66111 5.73245 6.18646 6.38522 6.40641 7.08843 7.11032 7.75027 8.40253 9.23829 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028003 B = 0.002286 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.652140 B =12244.722145 C =12539.981060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 O -0.326 6.326 4 C 0.153 3.847 5 C -0.164 4.164 6 C -0.033 4.033 7 C -0.184 4.184 8 C 0.554 3.446 9 O -0.589 6.589 10 N -0.584 5.584 11 C 0.089 3.911 12 C -0.124 4.124 13 C -0.117 4.117 14 C 0.150 3.850 15 H 0.045 0.955 16 C 0.146 3.854 17 H 0.068 0.932 18 C -0.132 4.132 19 C 0.192 3.808 20 N -0.616 5.616 21 C -0.239 4.239 22 H 0.079 0.921 23 C -0.063 4.063 24 N -0.949 5.949 25 Si 0.976 3.024 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.267 1.267 29 C -0.045 4.045 30 C -0.209 4.209 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.001 0.999 47 H 0.018 0.982 48 H 0.247 0.753 49 H 0.158 0.842 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.524 -4.514 -0.446 30.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 O -0.239 6.239 4 C 0.106 3.894 5 C -0.183 4.183 6 C -0.052 4.052 7 C -0.187 4.187 8 C 0.345 3.655 9 O -0.471 6.471 10 N -0.314 5.314 11 C -0.032 4.032 12 C -0.162 4.162 13 C -0.157 4.157 14 C 0.043 3.957 15 H 0.063 0.937 16 C 0.040 3.960 17 H 0.086 0.914 18 C -0.171 4.171 19 C 0.066 3.934 20 N -0.341 5.341 21 C -0.368 4.368 22 H 0.097 0.903 23 C -0.257 4.257 24 N -0.597 5.597 25 Si 0.805 3.195 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.192 1.192 29 C -0.063 4.063 30 C -0.227 4.227 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.166 0.834 37 H 0.148 0.852 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.019 0.981 47 H 0.037 0.963 48 H 0.056 0.944 49 H 0.175 0.825 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -30.194 -3.967 -0.164 30.454 hybrid contribution 1.908 0.274 -0.223 1.941 sum -28.285 -3.692 -0.387 28.528 Atomic orbital electron populations 1.21817 0.91765 1.04174 1.03125 1.23176 0.96778 0.80394 1.02973 1.86050 1.18433 1.31878 1.87572 1.19368 0.82956 0.94231 0.92845 1.20479 0.94307 0.96061 1.07433 1.21010 0.92254 0.98444 0.93469 1.19636 0.90952 0.95822 1.12312 1.18873 0.87612 0.81099 0.77888 1.90750 1.76974 1.32427 1.46963 1.47486 1.04893 1.30532 1.48458 1.22750 0.99605 0.90106 0.90715 1.21918 0.94078 1.03381 0.96872 1.21884 0.95668 0.98399 0.99781 1.21481 0.84330 0.96320 0.93550 0.93652 1.21183 0.79469 0.98804 0.96552 0.91414 1.22942 0.96410 0.98640 0.99152 1.20670 0.91315 0.95503 0.85876 1.44698 1.01818 1.68489 1.19065 1.19365 0.87024 1.25746 1.04620 0.90302 1.25653 1.00503 1.00582 0.98923 1.70188 1.24034 1.43443 1.22054 0.85097 0.79059 0.76544 0.78833 1.21781 1.21839 1.19191 1.21533 0.95599 0.95823 0.93323 1.21457 0.93067 0.99481 1.08681 0.92034 0.91879 0.88230 0.90222 0.90591 0.83434 0.85234 0.89126 0.85818 0.87614 0.91945 0.92627 0.93350 0.91503 0.89483 0.98107 0.96346 0.94356 0.82480 0.81719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 71.98 0.74 -0.09 16 2 C 0.04 0.31 5.45 71.98 0.39 0.70 16 3 O -0.33 -4.78 10.12 -90.30 -0.91 -5.69 16 4 C 0.15 2.47 6.70 22.63 0.15 2.63 16 5 C -0.16 -3.01 9.97 22.32 0.22 -2.78 16 6 C -0.03 -0.74 9.60 22.50 0.22 -0.52 16 7 C -0.18 -4.41 5.30 -20.08 -0.11 -4.51 16 8 C 0.55 17.88 7.36 86.71 0.64 18.51 16 9 O -0.59 -24.49 16.11 -3.98 -0.06 -24.55 16 10 N -0.58 -17.63 2.74 -798.77 -2.19 -19.82 16 11 C 0.09 1.84 4.43 86.48 0.38 2.23 16 12 C -0.12 -2.84 6.11 30.66 0.19 -2.65 16 13 C -0.12 -3.96 5.10 30.51 0.16 -3.81 16 14 C 0.15 6.28 3.58 44.94 0.16 6.44 16 15 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 16 C 0.15 5.64 3.12 46.01 0.14 5.78 16 17 H 0.07 3.11 6.93 -2.38 -0.02 3.09 16 18 C -0.13 -5.15 6.08 31.61 0.19 -4.96 16 19 C 0.19 9.78 5.16 87.01 0.45 10.23 16 20 N -0.62 -32.09 2.88 -670.56 -1.93 -34.02 16 21 C -0.24 -13.58 10.27 84.03 0.86 -12.71 16 22 H 0.08 4.33 7.84 -2.91 -0.02 4.31 16 23 C -0.06 -3.67 5.48 84.86 0.47 -3.20 16 24 N -0.95 -57.89 10.37 21.65 0.22 -57.66 16 25 Si 0.98 46.49 29.56 68.60 2.03 48.52 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 29 C -0.04 -0.74 7.31 22.50 0.16 -0.58 16 30 C -0.21 -2.77 9.01 22.32 0.20 -2.57 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.08 0.39 7.66 -2.39 -0.02 0.37 16 35 H 0.08 0.42 7.65 -2.38 -0.02 0.40 16 36 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.13 3.06 7.98 -2.91 -0.02 3.04 16 38 H 0.09 1.60 7.36 -2.39 -0.02 1.58 16 39 H 0.12 1.93 4.35 -2.39 -0.01 1.92 16 40 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.97 7.13 -2.39 -0.02 1.95 16 43 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.09 2.91 6.83 -2.38 -0.02 2.90 16 46 H 0.00 0.04 7.54 -2.39 -0.02 0.02 16 47 H 0.02 1.03 7.36 -2.39 -0.02 1.01 16 48 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 49 H 0.16 2.06 5.79 -2.91 -0.02 2.04 16 50 H 0.17 1.12 6.28 -2.91 -0.02 1.11 16 Total: -1.00 -76.19 385.59 3.71 -72.48 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.94 Total: 12.62 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.62 Total: 8.13 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -3.89 Total: -111.51 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.98 Total: -30.24 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -76.19 3.71 -72.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.141 kcal (2) G-P(sol) polarization free energy of solvation -76.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds