Wall clock time and date at job start Wed Apr 1 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47458 * 2 1 4 4 C 1.35709 * 117.00183 * 179.97438 * 3 2 1 5 5 C 1.39000 * 119.91165 * 179.97438 * 4 3 2 6 6 C 1.37696 * 120.08865 * 179.97438 * 5 4 3 7 7 C 1.39736 * 119.90972 * 0.02562 * 6 5 4 8 8 C 1.47609 * 120.08688 * 180.02562 * 7 6 5 9 9 O 1.21583 * 119.99664 * 325.46527 * 8 7 6 10 10 N 1.34770 * 120.00270 * 145.47040 * 8 7 6 11 11 C 1.47860 * 122.22541 * 354.40951 * 10 8 7 12 12 C 1.52718 * 111.04981 * 232.51168 * 11 10 8 13 13 C 1.53872 * 111.52477 * 311.45877 * 12 11 10 14 14 C 1.51080 * 107.34729 * 56.93381 * 13 12 11 15 15 H 1.09004 * 108.73146 * 51.47110 * 14 13 12 16 16 C 1.45716 * 122.23026 * 174.43238 * 10 8 7 17 17 H 1.09003 * 111.06597 * 241.36932 * 16 10 8 18 18 C 1.53435 * 116.37553 * 9.86336 * 16 10 8 19 19 C 1.55468 * 101.70558 * 152.71979 * 18 16 10 20 20 N 1.45020 * 119.19471 * 176.11556 * 14 13 12 21 21 C 1.36932 * 126.56434 * 331.22437 * 20 14 13 22 22 H 1.07998 * 119.99922 * 359.97438 * 21 20 14 23 23 C 1.38805 * 120.00102 * 180.02562 * 21 20 14 24 24 N 1.31625 * 120.00186 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00186 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47031 * 90.00002 * 25 23 21 27 27 H 1.48504 * 109.47317 * 209.99522 * 25 23 21 28 28 H 1.48501 * 109.47246 * 329.99726 * 25 23 21 29 29 C 1.39726 * 119.82748 * 0.27341 * 7 6 5 30 30 C 1.37708 * 119.91009 * 359.46719 * 29 7 6 31 31 H 1.09009 * 109.47125 * 60.00158 * 1 2 3 32 32 H 1.08997 * 109.47642 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47526 * 300.00173 * 1 2 3 34 34 H 1.09001 * 109.47024 * 239.99698 * 2 1 3 35 35 H 1.09005 * 109.46718 * 120.00145 * 2 1 3 36 36 H 1.08002 * 119.95451 * 0.02649 * 5 4 3 37 37 H 1.07995 * 120.04709 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.15828 * 352.91475 * 11 10 8 39 39 H 1.08992 * 109.16148 * 112.15661 * 11 10 8 40 40 H 1.08997 * 109.07377 * 71.98808 * 12 11 10 41 41 H 1.09001 * 109.06662 * 190.93649 * 12 11 10 42 42 H 1.08999 * 109.88010 * 176.39592 * 13 12 11 43 43 H 1.08999 * 109.88014 * 297.39823 * 13 12 11 44 44 H 1.09000 * 110.98778 * 270.83526 * 18 16 10 45 45 H 1.08999 * 110.98374 * 34.60622 * 18 16 10 46 46 H 1.09006 * 109.96442 * 96.79933 * 19 18 16 47 47 H 1.08999 * 109.96466 * 218.04223 * 19 18 16 48 48 H 0.97002 * 120.00329 * 180.02562 * 24 23 21 49 49 H 1.08001 * 120.04732 * 179.70125 * 29 7 6 50 50 H 1.07993 * 119.95940 * 180.25471 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 0.0005 5 6 3.8811 2.8103 0.0000 6 6 5.2456 2.9949 0.0011 7 6 6.0985 1.8880 0.0022 8 6 7.5619 2.0813 0.0039 9 8 8.0516 3.0209 -0.5925 10 7 8.3551 1.2164 0.6664 11 6 7.8080 0.1293 1.5061 12 6 8.4149 0.1600 2.9072 13 6 9.9484 0.2757 2.8558 14 6 10.2800 1.5210 2.0672 15 1 9.7196 2.3583 2.4832 16 6 9.8090 1.2907 0.6034 17 1 10.2296 0.3806 0.1755 18 6 10.3995 2.5400 -0.0635 19 6 11.7797 2.6522 0.6431 20 7 11.6664 1.9244 1.9320 21 6 12.6773 1.6812 2.8230 22 1 12.4748 1.1385 3.7345 23 6 13.9622 2.1331 2.5553 24 7 14.2089 2.7950 1.4446 25 14 15.3411 1.8020 3.7711 26 1 15.9938 0.5100 3.4394 27 1 16.3422 2.8962 3.6944 28 1 14.7838 1.7365 5.1460 29 6 5.5625 0.5976 -0.0036 30 6 4.1967 0.4214 0.0007 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 3.2212 3.6653 -0.0004 37 1 5.6562 3.9937 0.0003 38 1 6.7269 0.2453 1.5819 39 1 8.0330 -0.8302 1.0405 40 1 8.0114 1.0137 3.4515 41 1 8.1444 -0.7560 3.4326 42 1 10.3479 0.3596 3.8665 43 1 10.3699 -0.6001 2.3624 44 1 10.5212 2.3893 -1.1362 45 1 9.7851 3.4174 0.1382 46 1 12.5526 2.1955 0.0249 47 1 12.0200 3.6995 0.8263 48 1 15.1069 3.1105 1.2573 49 1 6.2184 -0.2604 -0.0077 50 1 3.7816 -0.5756 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049876844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:28 Heat of formation + Delta-G solvation = 0.282529 kcal Electronic energy + Delta-G solvation = -30730.101184 eV Core-core repulsion = 26724.004045 eV Total energy + Delta-G solvation = -4006.097139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.85741 -40.02399 -38.16533 -37.04155 -35.43761 -32.68208 -32.56435 -32.04822 -31.23422 -30.12952 -28.69763 -28.14297 -25.12530 -24.55061 -24.28143 -22.97479 -22.16310 -21.42614 -20.77646 -19.70338 -19.21080 -18.52809 -17.02750 -16.53175 -16.47260 -16.24171 -15.43451 -15.14511 -14.93683 -14.65249 -14.58582 -14.18533 -13.89360 -13.82419 -13.70962 -13.62490 -13.22203 -13.15426 -12.89170 -12.55951 -12.42573 -12.23588 -12.18445 -12.07886 -11.76286 -11.54507 -11.21302 -11.11462 -10.97154 -10.82804 -10.64829 -10.48673 -10.41975 -10.07159 -9.96121 -9.80790 -9.57856 -9.26792 -8.99616 -8.56230 -8.43714 -8.18613 -6.78966 -5.66622 -3.00802 0.83995 1.07710 2.77939 2.87833 3.16084 3.41988 3.46792 3.49099 3.66131 4.38100 4.45633 4.50864 4.53086 4.53968 4.63653 4.77602 4.85538 4.97718 5.05414 5.11187 5.19685 5.29080 5.31609 5.38822 5.42188 5.45481 5.56238 5.60726 5.64666 5.72011 5.79547 5.89200 5.90527 5.98467 6.02751 6.10492 6.20513 6.29611 6.32851 6.41651 6.43259 6.60149 6.75735 6.83033 6.94417 7.04023 7.23703 7.61939 7.68851 7.74167 7.88089 8.28615 8.44596 9.22712 9.86659 10.55357 11.45349 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027577 B = 0.002360 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.096666 B =11863.363746 C =12519.801834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.148 3.852 5 C -0.159 4.159 6 C -0.025 4.025 7 C -0.162 4.162 8 C 0.562 3.438 9 O -0.528 6.528 10 N -0.594 5.594 11 C 0.099 3.901 12 C -0.130 4.130 13 C -0.115 4.115 14 C 0.159 3.841 15 H 0.018 0.982 16 C 0.117 3.883 17 H 0.080 0.920 18 C -0.134 4.134 19 C 0.172 3.828 20 N -0.593 5.593 21 C -0.225 4.225 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.052 4.052 30 C -0.218 4.218 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.056 0.944 47 H 0.039 0.961 48 H 0.252 0.748 49 H 0.137 0.863 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.254 -8.416 -2.444 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.228 6.228 4 C 0.102 3.898 5 C -0.178 4.178 6 C -0.043 4.043 7 C -0.166 4.166 8 C 0.351 3.649 9 O -0.405 6.405 10 N -0.327 5.327 11 C -0.023 4.023 12 C -0.168 4.168 13 C -0.154 4.154 14 C 0.050 3.950 15 H 0.036 0.964 16 C 0.013 3.987 17 H 0.098 0.902 18 C -0.173 4.173 19 C 0.048 3.952 20 N -0.318 5.318 21 C -0.353 4.353 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.070 4.070 30 C -0.237 4.237 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.154 0.846 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.902 -7.705 -2.743 27.162 hybrid contribution 0.878 -0.574 0.669 1.245 sum -25.024 -8.279 -2.073 26.439 Atomic orbital electron populations 1.21783 0.92627 1.02956 1.03612 1.22835 0.95986 0.81802 1.01644 1.86039 1.19081 1.29589 1.88079 1.19216 0.82215 0.94187 0.94222 1.20381 0.94970 0.94911 1.07528 1.21049 0.91510 0.98979 0.92801 1.19980 0.93785 0.94061 1.08733 1.18140 0.85730 0.81967 0.79096 1.90783 1.75127 1.30140 1.44498 1.47877 1.07051 1.30975 1.46751 1.22127 0.98910 0.89869 0.91435 1.21914 0.96994 1.02191 0.95747 1.21429 0.93315 0.99148 1.01511 1.20750 0.87903 0.94176 0.92166 0.96422 1.22432 0.77016 0.99731 0.99563 0.90220 1.23051 0.98367 0.97069 0.98780 1.21756 0.91321 0.96574 0.85561 1.44108 1.02896 1.63646 1.21135 1.18978 0.86950 1.30424 0.98961 0.90401 1.24809 0.97414 1.00552 0.97709 1.69953 1.20039 1.42096 1.24592 0.86149 0.82182 0.77303 0.80290 1.21678 1.21720 1.20768 1.21318 0.94600 0.96594 0.94497 1.21154 0.93967 0.98190 1.10394 0.91473 0.90279 0.91443 0.91822 0.91775 0.84625 0.84205 0.89316 0.91551 0.91797 0.90952 0.91489 0.91797 0.92251 0.89420 0.92604 0.94252 0.93752 0.84552 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 10.28 37.16 0.38 -0.28 16 2 C 0.05 0.31 5.45 37.16 0.20 0.51 16 3 O -0.31 -2.88 10.12 -18.83 -0.19 -3.07 16 4 C 0.15 1.47 6.70 -39.02 -0.26 1.21 16 5 C -0.16 -1.66 9.97 -39.50 -0.39 -2.06 16 6 C -0.02 -0.30 9.60 -39.22 -0.38 -0.67 16 7 C -0.16 -2.12 5.36 -104.96 -0.56 -2.68 16 8 C 0.56 9.28 7.40 -12.44 -0.09 9.19 16 9 O -0.53 -10.51 13.53 5.29 0.07 -10.44 16 10 N -0.59 -9.45 2.91 -165.19 -0.48 -9.93 16 11 C 0.10 1.19 4.77 -3.44 -0.02 1.17 16 12 C -0.13 -1.66 5.93 -26.42 -0.16 -1.82 16 13 C -0.12 -1.98 5.45 -27.24 -0.15 -2.13 16 14 C 0.16 3.36 2.57 -68.37 -0.18 3.19 16 15 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 16 C 0.12 2.24 3.33 -66.81 -0.22 2.02 16 17 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 18 C -0.13 -2.90 5.11 -25.19 -0.13 -3.03 16 19 C 0.17 4.41 5.47 -1.65 -0.01 4.41 16 20 N -0.59 -15.35 3.35 -163.23 -0.55 -15.90 16 21 C -0.22 -6.24 9.94 -15.06 -0.15 -6.39 16 22 H 0.08 2.07 7.31 -52.49 -0.38 1.69 16 23 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 24 N -0.92 -27.46 10.46 55.49 0.58 -26.88 16 25 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 29 C -0.05 -0.53 7.41 -39.22 -0.29 -0.82 16 30 C -0.22 -1.96 9.01 -39.49 -0.36 -2.32 16 31 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 35 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 36 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.14 1.67 7.99 -52.49 -0.42 1.25 16 38 H 0.09 0.89 4.62 -51.93 -0.24 0.65 16 39 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 43 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.09 2.00 6.02 -51.93 -0.31 1.68 16 46 H 0.06 1.55 7.19 -51.93 -0.37 1.18 16 47 H 0.04 1.11 7.81 -51.93 -0.41 0.70 16 48 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.14 1.21 6.01 -52.49 -0.32 0.89 16 50 H 0.13 0.84 6.28 -52.49 -0.33 0.51 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -33.27 384.33 -10.40 -43.67 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.75 Total: 0.35 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -2.85 Total: -0.84 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.45 Total: -52.70 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.12 Total: -13.51 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.27 -10.40 -43.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.955 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds