Wall clock time and date at job start Wed Apr 1 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47458 * 2 1 4 4 C 1.35709 * 117.00183 * 179.97438 * 3 2 1 5 5 C 1.39000 * 119.91165 * 179.97438 * 4 3 2 6 6 C 1.37696 * 120.08865 * 179.97438 * 5 4 3 7 7 C 1.39736 * 119.90972 * 0.02562 * 6 5 4 8 8 C 1.47609 * 120.08688 * 180.02562 * 7 6 5 9 9 O 1.21583 * 119.99664 * 325.46527 * 8 7 6 10 10 N 1.34770 * 120.00270 * 145.47040 * 8 7 6 11 11 C 1.47860 * 122.22541 * 354.40951 * 10 8 7 12 12 C 1.52718 * 111.04981 * 232.51168 * 11 10 8 13 13 C 1.53872 * 111.52477 * 311.45877 * 12 11 10 14 14 C 1.51080 * 107.34729 * 56.93381 * 13 12 11 15 15 H 1.09004 * 108.73146 * 51.47110 * 14 13 12 16 16 C 1.45716 * 122.23026 * 174.43238 * 10 8 7 17 17 H 1.09003 * 111.06597 * 241.36932 * 16 10 8 18 18 C 1.53435 * 116.37553 * 9.86336 * 16 10 8 19 19 C 1.55468 * 101.70558 * 152.71979 * 18 16 10 20 20 N 1.45020 * 119.19471 * 176.11556 * 14 13 12 21 21 C 1.36932 * 126.56434 * 331.22437 * 20 14 13 22 22 H 1.07998 * 119.99922 * 359.97438 * 21 20 14 23 23 C 1.38805 * 120.00102 * 180.02562 * 21 20 14 24 24 N 1.31625 * 120.00186 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00186 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47031 * 90.00002 * 25 23 21 27 27 H 1.48504 * 109.47317 * 209.99522 * 25 23 21 28 28 H 1.48501 * 109.47246 * 329.99726 * 25 23 21 29 29 C 1.39726 * 119.82748 * 0.27341 * 7 6 5 30 30 C 1.37708 * 119.91009 * 359.46719 * 29 7 6 31 31 H 1.09009 * 109.47125 * 60.00158 * 1 2 3 32 32 H 1.08997 * 109.47642 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47526 * 300.00173 * 1 2 3 34 34 H 1.09001 * 109.47024 * 239.99698 * 2 1 3 35 35 H 1.09005 * 109.46718 * 120.00145 * 2 1 3 36 36 H 1.08002 * 119.95451 * 0.02649 * 5 4 3 37 37 H 1.07995 * 120.04709 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.15828 * 352.91475 * 11 10 8 39 39 H 1.08992 * 109.16148 * 112.15661 * 11 10 8 40 40 H 1.08997 * 109.07377 * 71.98808 * 12 11 10 41 41 H 1.09001 * 109.06662 * 190.93649 * 12 11 10 42 42 H 1.08999 * 109.88010 * 176.39592 * 13 12 11 43 43 H 1.08999 * 109.88014 * 297.39823 * 13 12 11 44 44 H 1.09000 * 110.98778 * 270.83526 * 18 16 10 45 45 H 1.08999 * 110.98374 * 34.60622 * 18 16 10 46 46 H 1.09006 * 109.96442 * 96.79933 * 19 18 16 47 47 H 1.08999 * 109.96466 * 218.04223 * 19 18 16 48 48 H 0.97002 * 120.00329 * 180.02562 * 24 23 21 49 49 H 1.08001 * 120.04732 * 179.70125 * 29 7 6 50 50 H 1.07993 * 119.95940 * 180.25471 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 0.0005 5 6 3.8811 2.8103 0.0000 6 6 5.2456 2.9949 0.0011 7 6 6.0985 1.8880 0.0022 8 6 7.5619 2.0813 0.0039 9 8 8.0516 3.0209 -0.5925 10 7 8.3551 1.2164 0.6664 11 6 7.8080 0.1293 1.5061 12 6 8.4149 0.1600 2.9072 13 6 9.9484 0.2757 2.8558 14 6 10.2800 1.5210 2.0672 15 1 9.7196 2.3583 2.4832 16 6 9.8090 1.2907 0.6034 17 1 10.2296 0.3806 0.1755 18 6 10.3995 2.5400 -0.0635 19 6 11.7797 2.6522 0.6431 20 7 11.6664 1.9244 1.9320 21 6 12.6773 1.6812 2.8230 22 1 12.4748 1.1385 3.7345 23 6 13.9622 2.1331 2.5553 24 7 14.2089 2.7950 1.4446 25 14 15.3411 1.8020 3.7711 26 1 15.9938 0.5100 3.4394 27 1 16.3422 2.8962 3.6944 28 1 14.7838 1.7365 5.1460 29 6 5.5625 0.5976 -0.0036 30 6 4.1967 0.4214 0.0007 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 3.2212 3.6653 -0.0004 37 1 5.6562 3.9937 0.0003 38 1 6.7269 0.2453 1.5819 39 1 8.0330 -0.8302 1.0405 40 1 8.0114 1.0137 3.4515 41 1 8.1444 -0.7560 3.4326 42 1 10.3479 0.3596 3.8665 43 1 10.3699 -0.6001 2.3624 44 1 10.5212 2.3893 -1.1362 45 1 9.7851 3.4174 0.1382 46 1 12.5526 2.1955 0.0249 47 1 12.0200 3.6995 0.8263 48 1 15.1069 3.1105 1.2573 49 1 6.2184 -0.2604 -0.0077 50 1 3.7816 -0.5756 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049876844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:27 Heat of formation + Delta-G solvation = -19.605921 kcal Electronic energy + Delta-G solvation = -30730.963612 eV Core-core repulsion = 26724.004045 eV Total energy + Delta-G solvation = -4006.959567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.98324 -40.97737 -39.44229 -38.07272 -36.96440 -34.30785 -33.94571 -32.91161 -32.02083 -31.33148 -30.27325 -29.60648 -26.53736 -26.25877 -25.04122 -23.96122 -23.07030 -22.79979 -22.12773 -21.44055 -20.43875 -19.22927 -18.67236 -17.78820 -17.33435 -17.05127 -16.93245 -16.65493 -16.28415 -15.86927 -15.79101 -15.59117 -15.19714 -15.05303 -14.57203 -14.46334 -14.31804 -14.20453 -14.18802 -13.91985 -13.61136 -13.37410 -13.16930 -13.10528 -12.98131 -12.82215 -12.70184 -12.62255 -12.29333 -12.09463 -11.98067 -11.79206 -11.72057 -11.68906 -11.62453 -11.50029 -11.42210 -10.77740 -10.38175 -10.05140 -9.60695 -9.21877 -8.91168 -7.83895 -5.21096 -0.04036 0.30502 1.45305 1.48160 1.56510 1.74466 1.94848 2.20307 2.50431 2.75145 3.31042 3.34404 3.55234 3.73089 3.86674 3.92167 3.99311 4.04161 4.08128 4.12157 4.15970 4.22280 4.26604 4.33315 4.39013 4.43525 4.54219 4.56375 4.58508 4.64721 4.77561 4.87220 4.91113 4.96513 4.99416 5.02193 5.08414 5.11771 5.14880 5.19135 5.28338 5.31657 5.36918 5.44537 5.48696 5.59367 5.60439 5.65353 5.73630 6.17665 6.39488 6.49383 7.04953 7.17941 7.75195 8.45787 9.27941 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027577 B = 0.002360 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.096666 B =11863.363746 C =12519.801834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 O -0.327 6.327 4 C 0.151 3.849 5 C -0.165 4.165 6 C -0.036 4.036 7 C -0.183 4.183 8 C 0.557 3.443 9 O -0.576 6.576 10 N -0.594 5.594 11 C 0.093 3.907 12 C -0.121 4.121 13 C -0.110 4.110 14 C 0.153 3.847 15 H -0.006 1.006 16 C 0.133 3.867 17 H 0.087 0.913 18 C -0.119 4.119 19 C 0.183 3.817 20 N -0.612 5.612 21 C -0.231 4.231 22 H 0.090 0.910 23 C -0.072 4.072 24 N -0.955 5.955 25 Si 0.981 3.019 26 H -0.283 1.283 27 H -0.299 1.299 28 H -0.267 1.267 29 C -0.044 4.044 30 C -0.208 4.208 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.115 0.885 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.027 0.973 47 H -0.002 1.002 48 H 0.246 0.754 49 H 0.158 0.842 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.414 -12.163 -1.307 31.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 O -0.240 6.240 4 C 0.104 3.896 5 C -0.184 4.184 6 C -0.055 4.055 7 C -0.186 4.186 8 C 0.348 3.652 9 O -0.457 6.457 10 N -0.326 5.326 11 C -0.027 4.027 12 C -0.159 4.159 13 C -0.149 4.149 14 C 0.045 3.955 15 H 0.012 0.988 16 C 0.028 3.972 17 H 0.104 0.896 18 C -0.157 4.157 19 C 0.058 3.942 20 N -0.337 5.337 21 C -0.360 4.360 22 H 0.107 0.893 23 C -0.265 4.265 24 N -0.604 5.604 25 Si 0.809 3.191 26 H -0.209 1.209 27 H -0.226 1.226 28 H -0.192 1.192 29 C -0.062 4.062 30 C -0.226 4.226 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.164 0.836 37 H 0.145 0.855 38 H 0.134 0.866 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.133 0.867 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.016 0.984 48 H 0.055 0.945 49 H 0.176 0.824 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -29.133 -11.501 -1.571 31.360 hybrid contribution 1.690 0.617 0.312 1.826 sum -27.442 -10.884 -1.259 29.549 Atomic orbital electron populations 1.21821 0.91779 1.04195 1.03097 1.23177 0.96767 0.80382 1.02978 1.86050 1.18437 1.31922 1.87626 1.19351 0.82975 0.94204 0.93049 1.20469 0.94299 0.96109 1.07482 1.21002 0.92325 0.98456 0.93705 1.19728 0.91243 0.95789 1.11862 1.18747 0.87296 0.81038 0.78122 1.90750 1.76269 1.32131 1.46538 1.47945 1.05249 1.32073 1.47312 1.22512 1.00236 0.89589 0.90361 1.21905 0.93143 1.04062 0.96810 1.21406 0.96875 0.96698 0.99911 1.20931 0.84943 0.95341 0.94285 0.98829 1.22032 0.79620 0.98215 0.97373 0.89558 1.22781 0.95919 0.98328 0.98676 1.21453 0.92876 0.93890 0.86029 1.44369 1.04681 1.63845 1.20771 1.19411 0.87521 1.29543 0.99530 0.89267 1.25731 1.00089 1.00953 0.99701 1.70191 1.20003 1.43611 1.26635 0.85039 0.78670 0.76788 0.78596 1.20937 1.22560 1.19165 1.21486 0.95528 0.95710 0.93460 1.21460 0.93098 0.99417 1.08608 0.92063 0.88157 0.91931 0.90539 0.90219 0.83633 0.85541 0.86601 0.88500 0.92540 0.86702 0.92570 0.91264 0.91840 0.90809 0.95439 0.98394 0.94497 0.82428 0.81625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 71.98 0.74 -0.11 16 2 C 0.04 0.32 5.45 71.98 0.39 0.71 16 3 O -0.33 -4.97 10.12 -90.30 -0.91 -5.88 16 4 C 0.15 2.54 6.70 22.63 0.15 2.70 16 5 C -0.17 -3.22 9.97 22.32 0.22 -2.99 16 6 C -0.04 -0.86 9.60 22.50 0.22 -0.64 16 7 C -0.18 -4.52 5.36 -20.08 -0.11 -4.63 16 8 C 0.56 18.32 7.40 86.72 0.64 18.97 16 9 O -0.58 -23.95 13.53 -3.98 -0.05 -24.00 16 10 N -0.59 -18.13 2.91 -794.80 -2.32 -20.45 16 11 C 0.09 1.86 4.77 86.02 0.41 2.27 16 12 C -0.12 -2.65 5.93 30.79 0.18 -2.46 16 13 C -0.11 -3.59 5.45 30.26 0.16 -3.43 16 14 C 0.15 6.55 2.57 45.50 0.12 6.67 16 15 H -0.01 -0.27 8.06 -2.39 -0.02 -0.29 16 16 C 0.13 5.13 3.33 46.14 0.15 5.28 16 17 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 18 C -0.12 -5.42 5.11 31.59 0.16 -5.26 16 19 C 0.18 10.03 5.47 86.85 0.48 10.51 16 20 N -0.61 -32.92 3.35 -670.35 -2.25 -35.17 16 21 C -0.23 -13.14 9.94 84.03 0.84 -12.30 16 22 H 0.09 4.74 7.31 -2.91 -0.02 4.72 16 23 C -0.07 -4.23 5.49 84.86 0.47 -3.76 16 24 N -0.96 -59.91 10.46 21.65 0.23 -59.68 16 25 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 27 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 C -0.04 -0.73 7.41 22.50 0.17 -0.57 16 30 C -0.21 -2.80 9.01 22.33 0.20 -2.60 16 31 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.42 7.65 -2.39 -0.02 0.40 16 35 H 0.08 0.40 7.65 -2.38 -0.02 0.38 16 36 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.13 3.23 7.99 -2.91 -0.02 3.21 16 38 H 0.12 1.76 4.62 -2.39 -0.01 1.75 16 39 H 0.10 1.44 8.05 -2.39 -0.02 1.42 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.06 1.94 7.70 -2.39 -0.02 1.92 16 43 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 44 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 45 H 0.07 3.61 6.02 -2.39 -0.01 3.59 16 46 H 0.03 1.64 7.19 -2.38 -0.02 1.62 16 47 H 0.00 -0.14 7.81 -2.39 -0.02 -0.15 16 48 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 49 H 0.16 1.96 6.01 -2.91 -0.02 1.94 16 50 H 0.17 1.10 6.28 -2.91 -0.02 1.09 16 Total: -1.00 -78.43 384.33 3.25 -75.18 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.94 Total: 12.97 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 5.59 Total: 8.35 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -4.34 Total: -115.30 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.97 Total: -29.89 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -78.43 3.25 -75.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.573 kcal (2) G-P(sol) polarization free energy of solvation -78.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds