Wall clock time and date at job start Wed Apr 1 2020 03:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 119.99967 * 2 1 4 4 N 1.34775 * 120.00102 * 180.02562 * 2 1 3 5 5 C 1.45107 * 116.62124 * 3.68655 * 4 2 1 6 6 C 1.53035 * 110.42071 * 152.99668 * 5 4 2 7 7 C 1.53311 * 107.66024 * 52.05440 * 6 5 4 8 8 C 1.51369 * 108.73692 * 291.40355 * 7 6 5 9 9 H 1.08999 * 109.24584 * 178.30383 * 8 7 6 10 10 C 1.54061 * 110.39950 * 299.74227 * 8 7 6 11 11 N 1.47386 * 106.11256 * 150.17233 * 10 8 7 12 12 C 1.46909 * 110.99899 * 219.21312 * 11 10 8 13 13 C 1.50697 * 109.46986 * 191.39690 * 12 11 10 14 14 C 1.38300 * 119.93235 * 89.99884 * 13 12 11 15 15 C 1.38097 * 120.06879 * 179.97438 * 14 13 12 16 16 C 1.38876 * 119.93175 * 0.02922 * 15 14 13 17 17 O 1.35757 * 120.07062 * 179.97438 * 16 15 14 18 18 C 1.34830 * 116.99603 * 5.48549 * 17 16 15 19 19 H 1.07998 * 120.00445 * 354.95035 * 18 17 16 20 20 C 1.38657 * 119.99706 * 174.95223 * 18 17 16 21 21 N 1.31555 * 120.00252 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00081 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47159 * 89.99998 * 22 20 18 24 24 H 1.48501 * 109.47320 * 210.00475 * 22 20 18 25 25 H 1.48501 * 109.47167 * 330.00090 * 22 20 18 26 26 C 1.38880 * 119.86152 * 0.26927 * 16 15 14 27 27 C 1.38094 * 119.93028 * 359.40910 * 26 16 15 28 28 C 1.47231 * 109.10350 * 341.83736 * 11 10 8 29 29 C 1.44273 * 116.62029 * 183.67385 * 4 2 1 30 30 H 1.09005 * 109.30536 * 71.02943 * 29 4 2 31 31 H 1.09001 * 109.46916 * 264.46460 * 1 2 3 32 32 H 1.08998 * 109.47182 * 24.47203 * 1 2 3 33 33 H 1.09008 * 109.46868 * 144.47101 * 1 2 3 34 34 H 1.09005 * 109.31722 * 273.29469 * 5 4 2 35 35 H 1.09001 * 109.30832 * 32.70930 * 5 4 2 36 36 H 1.08995 * 109.82600 * 171.58996 * 6 5 4 37 37 H 1.09001 * 109.82311 * 292.51703 * 6 5 4 38 38 H 1.09002 * 109.52433 * 51.48498 * 7 6 5 39 39 H 1.08996 * 109.52259 * 171.61062 * 7 6 5 40 40 H 1.09004 * 110.12322 * 31.01168 * 10 8 7 41 41 H 1.08998 * 110.12650 * 269.33319 * 10 8 7 42 42 H 1.08995 * 109.46805 * 71.39412 * 12 11 10 43 43 H 1.09004 * 109.46872 * 311.39696 * 12 11 10 44 44 H 1.08000 * 119.96379 * 0.02562 * 14 13 12 45 45 H 1.08002 * 120.03185 * 180.02562 * 15 14 13 46 46 H 0.96995 * 120.00209 * 179.97438 * 21 20 18 47 47 H 1.08004 * 120.03432 * 179.72447 * 26 16 15 48 48 H 1.08002 * 119.97133 * 180.31938 * 27 26 16 49 49 H 1.09005 * 109.84190 * 119.73186 * 28 11 10 50 50 H 1.08993 * 109.85058 * 240.75862 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.3849 -2.3775 -0.0845 6 6 2.1943 -3.5053 -0.7287 7 6 3.5222 -3.6164 0.0294 8 6 4.3504 -2.3822 -0.2570 9 1 5.2844 -2.4385 0.3022 10 6 4.6376 -2.2665 -1.7661 11 7 4.7563 -0.8253 -2.0506 12 6 4.1286 -0.4889 -3.3356 13 6 4.5065 0.9166 -3.7265 14 6 5.6411 1.1406 -4.4850 15 6 5.9896 2.4273 -4.8452 16 6 5.1999 3.4971 -4.4445 17 8 5.5402 4.7633 -4.7966 18 6 6.5908 4.9055 -5.6297 19 1 7.1701 4.0417 -5.9207 20 6 6.9276 6.1608 -6.1127 21 7 6.2224 7.2131 -5.7578 22 14 8.3836 6.3580 -7.2662 23 1 7.9251 6.2138 -8.6712 24 1 8.9861 7.7021 -7.0776 25 1 9.3972 5.3148 -6.9668 26 6 4.0646 3.2695 -3.6777 27 6 3.7177 1.9798 -3.3263 28 6 4.1434 -0.0646 -0.9490 29 6 3.6188 -1.0835 0.0822 30 1 3.9040 -0.7605 1.0834 31 1 -0.3633 -0.0991 1.0229 32 1 -0.3633 0.9353 -0.4257 33 1 -0.3633 -0.8364 -0.5972 34 1 1.0806 -2.6792 0.9178 35 1 0.4961 -2.1834 -0.6848 36 1 1.6457 -4.4441 -0.6527 37 1 2.3852 -3.2716 -1.7761 38 1 3.3259 -3.6911 1.0990 39 1 4.0594 -4.5039 -0.3051 40 1 3.8149 -2.6953 -2.3384 41 1 5.5702 -2.7750 -2.0105 42 1 3.0452 -0.5609 -3.2406 43 1 4.4732 -1.1841 -4.1012 44 1 6.2546 0.3082 -4.7965 45 1 6.8756 2.6015 -5.4379 46 1 6.4583 8.0913 -6.0954 47 1 3.4509 4.0998 -3.3608 48 1 2.8321 1.8016 -2.7344 49 1 4.8894 0.5807 -0.4851 50 1 3.3172 0.5362 -1.3289 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049935705.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:32 Heat of formation + Delta-G solvation = -10.174552 kcal Electronic energy + Delta-G solvation = -30944.116711 eV Core-core repulsion = 26937.566119 eV Total energy + Delta-G solvation = -4006.550592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.47789 -39.04579 -38.53729 -37.03304 -35.85783 -33.74947 -32.49506 -31.98892 -30.25884 -30.06659 -29.04910 -27.74409 -26.06059 -25.23350 -24.17490 -23.15702 -22.01732 -21.54994 -20.17037 -20.08628 -18.78192 -17.87989 -17.29176 -16.87409 -16.46745 -16.16692 -15.58477 -15.39911 -14.77316 -14.58299 -14.51626 -14.31575 -14.21724 -13.71371 -13.55277 -13.41311 -13.35429 -13.18938 -12.91826 -12.69584 -12.62580 -12.57960 -12.24975 -12.04659 -11.70491 -11.65602 -11.56185 -11.24139 -11.15501 -11.04193 -10.97326 -10.88930 -10.65465 -10.50585 -10.36530 -10.32994 -9.71826 -9.22405 -8.82254 -8.74842 -8.04273 -8.02786 -7.05934 -6.36931 -3.95369 2.35999 2.40949 2.41969 2.75487 3.17977 3.18530 3.23473 4.03500 4.04446 4.10234 4.22587 4.36636 4.48504 4.56072 4.64447 4.78061 4.83028 5.00281 5.01727 5.09003 5.13699 5.19233 5.21847 5.30279 5.35602 5.43126 5.45190 5.47564 5.51458 5.56943 5.61906 5.73680 5.77062 5.84287 5.88793 5.90281 5.92828 6.09014 6.29283 6.35285 6.54881 6.56234 6.83963 7.01469 7.07371 7.14724 7.15544 7.26549 7.40018 7.53627 7.55965 7.95651 7.99621 8.08820 9.08909 9.81092 10.81483 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.002475 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.092033 B =11308.774495 C =12197.576663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.495 3.505 3 O -0.525 6.525 4 N -0.600 5.600 5 C 0.109 3.891 6 C -0.140 4.140 7 C -0.111 4.111 8 C -0.101 4.101 9 H 0.091 0.909 10 C 0.045 3.955 11 N -0.525 5.525 12 C 0.115 3.885 13 C -0.178 4.178 14 C -0.051 4.051 15 C -0.236 4.236 16 C 0.156 3.844 17 O -0.180 6.180 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.192 4.192 27 C -0.062 4.062 28 C 0.030 3.970 29 C 0.137 3.863 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.028 0.972 43 H 0.069 0.931 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.269 0.731 47 H 0.115 0.885 48 H 0.106 0.894 49 H 0.081 0.919 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 -24.791 11.701 29.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.283 3.717 3 O -0.401 6.401 4 N -0.334 5.334 5 C -0.014 4.014 6 C -0.177 4.177 7 C -0.149 4.149 8 C -0.120 4.120 9 H 0.110 0.890 10 C -0.083 4.083 11 N -0.249 5.249 12 C -0.012 4.012 13 C -0.179 4.179 14 C -0.070 4.070 15 C -0.256 4.256 16 C 0.103 3.897 17 O -0.084 6.084 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.211 4.211 27 C -0.080 4.080 28 C -0.097 4.097 29 C 0.033 3.967 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.046 0.954 43 H 0.087 0.913 44 H 0.123 0.877 45 H 0.143 0.857 46 H 0.079 0.921 47 H 0.133 0.867 48 H 0.124 0.876 49 H 0.099 0.901 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.691 -23.655 11.674 28.103 hybrid contribution -0.046 -0.217 -0.435 0.489 sum -9.738 -23.872 11.238 28.125 Atomic orbital electron populations 1.22074 0.92066 1.05194 1.04463 1.20949 0.90794 0.83584 0.76356 1.90763 1.70156 1.31338 1.47875 1.47083 1.06066 1.06509 1.73787 1.21431 0.94086 0.84960 1.00926 1.22026 0.96719 0.98232 1.00740 1.21193 0.95670 0.97406 1.00590 1.21637 0.99239 0.93541 0.97619 0.89024 1.22994 1.00810 0.90484 0.94007 1.63360 1.55597 1.03520 1.02430 1.20901 0.95120 0.94649 0.90565 1.19046 0.99176 0.93407 1.06306 1.20520 0.94842 0.95665 0.95935 1.21130 1.03334 0.92466 1.08624 1.19386 0.92322 0.85503 0.92519 1.83982 1.46311 1.20823 1.57235 1.21323 1.05882 0.95126 1.24286 0.89126 1.25277 0.99021 0.94323 0.97967 1.70043 1.38549 0.99028 1.42386 0.85723 0.79927 0.78200 0.79641 1.19949 1.20315 1.19218 1.20159 0.98364 0.96754 1.05813 1.20500 0.98218 0.91743 0.97568 1.23478 0.99687 0.95726 0.90840 1.21230 0.79010 0.96168 1.00325 0.90915 0.88956 0.88843 0.89859 0.91909 0.90058 0.90162 0.90519 0.91326 0.90907 0.93220 0.90458 0.95424 0.91252 0.87672 0.85692 0.92123 0.86726 0.87561 0.90073 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.55 36.01 0.34 -0.92 16 2 C 0.49 5.60 7.09 -10.99 -0.08 5.52 16 3 O -0.53 -8.39 14.16 5.56 0.08 -8.32 16 4 N -0.60 -5.68 3.06 -168.16 -0.51 -6.19 16 5 C 0.11 0.64 5.68 -4.77 -0.03 0.61 16 6 C -0.14 -0.74 6.03 -26.55 -0.16 -0.91 16 7 C -0.11 -0.66 5.46 -27.39 -0.15 -0.81 16 8 C -0.10 -0.87 3.15 -90.96 -0.29 -1.16 16 9 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 10 C 0.04 0.46 6.12 -3.00 -0.02 0.44 16 11 N -0.52 -7.34 5.12 -233.92 -1.20 -8.54 16 12 C 0.11 1.71 4.70 -4.97 -0.02 1.68 16 13 C -0.18 -3.32 5.11 -104.57 -0.53 -3.85 16 14 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16 15 C -0.24 -5.46 9.17 -39.40 -0.36 -5.82 16 16 C 0.16 4.02 6.65 -39.11 -0.26 3.76 16 17 O -0.18 -5.38 9.76 0.02 0.00 -5.38 16 18 C -0.39 -11.32 9.49 30.89 0.29 -11.03 16 19 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -26.19 13.67 55.48 0.76 -25.43 16 22 Si 0.94 21.19 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 C -0.19 -4.43 9.99 -39.40 -0.39 -4.83 16 27 C -0.06 -1.23 8.72 -39.61 -0.35 -1.58 16 28 C 0.03 0.44 5.07 -3.04 -0.02 0.43 16 29 C 0.14 1.51 3.17 -68.58 -0.22 1.30 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.40 5.78 -51.92 -0.30 0.10 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.37 5.62 -51.93 -0.29 0.07 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.51 5.73 -51.93 -0.30 0.21 16 38 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 0.47 5.16 -51.93 -0.27 0.20 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.40 7.90 -51.93 -0.41 -0.01 16 43 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 44 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 46 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.11 2.60 8.06 -52.48 -0.42 2.18 16 48 H 0.11 1.99 6.91 -52.49 -0.36 1.62 16 49 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 50 H 0.10 1.62 2.58 -51.93 -0.13 1.48 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -34.39 381.34 -10.12 -44.51 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.26 Total: 5.00 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -2.71 Total: -17.57 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: -0.95 Total: -40.16 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.08 Total: -13.70 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.39 -10.12 -44.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049935705.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.336 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds