Wall clock time and date at job start Wed Apr 1 2020 02:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47504 * 2 1 4 4 C 1.35903 * 117.00506 * 179.97438 * 3 2 1 5 5 C 1.38854 * 119.98064 * 359.97438 * 4 3 2 6 6 C 1.38247 * 120.23547 * 180.02562 * 5 4 3 7 7 C 1.38011 * 120.20850 * 359.97438 * 6 5 4 8 8 C 1.39555 * 119.96377 * 359.97438 * 7 6 5 9 9 C 1.47864 * 120.11389 * 180.02562 * 8 7 6 10 10 O 1.21556 * 119.99758 * 186.95256 * 9 8 7 11 11 N 1.34770 * 120.00137 * 6.95372 * 9 8 7 12 12 C 1.47666 * 134.45579 * 184.94126 * 11 9 8 13 13 C 1.53510 * 85.98094 * 204.30963 * 12 11 9 14 14 C 1.47665 * 134.46075 * 4.93551 * 11 9 8 15 15 C 1.52668 * 113.56944 * 91.01564 * 13 12 11 16 16 C 1.53339 * 109.10949 * 73.80721 * 15 13 12 17 17 N 1.46883 * 108.75828 * 52.41117 * 16 15 13 18 18 C 1.36939 * 120.47097 * 124.44530 * 17 16 15 19 19 H 1.08004 * 119.99759 * 214.53465 * 18 17 16 20 20 C 1.38808 * 120.00029 * 34.52790 * 18 17 16 21 21 N 1.31618 * 119.99871 * 12.39308 * 20 18 17 22 22 Si 1.86796 * 120.00069 * 192.39220 * 20 18 17 23 23 H 1.48500 * 109.47511 * 59.99980 * 22 20 18 24 24 H 1.48504 * 109.47159 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47130 * 300.00279 * 22 20 18 26 26 C 1.46892 * 119.06476 * 304.45921 * 17 16 15 27 27 C 1.52668 * 113.56544 * 222.23261 * 13 12 11 28 28 C 1.38451 * 119.98934 * 180.25361 * 4 3 2 29 29 H 1.08995 * 109.46998 * 300.00430 * 1 2 3 30 30 H 1.09002 * 109.46367 * 60.00325 * 1 2 3 31 31 H 1.09000 * 109.46855 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47329 * 239.99287 * 2 1 3 33 33 H 1.09008 * 109.47028 * 119.99541 * 2 1 3 34 34 H 1.07999 * 119.88371 * 0.02562 * 5 4 3 35 35 H 1.08005 * 119.89556 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.01700 * 180.02562 * 7 6 5 37 37 H 1.09008 * 113.79295 * 90.04625 * 12 11 9 38 38 H 1.08994 * 113.79416 * 318.57595 * 12 11 9 39 39 H 1.09005 * 113.78775 * 41.41576 * 14 11 9 40 40 H 1.09009 * 113.79272 * 269.95575 * 14 11 9 41 41 H 1.09004 * 109.53356 * 193.69989 * 15 13 12 42 42 H 1.09003 * 109.53401 * 313.91892 * 15 13 12 43 43 H 1.09000 * 109.58964 * 172.18710 * 16 15 13 44 44 H 1.08995 * 109.58951 * 292.62275 * 16 15 13 45 45 H 0.97002 * 119.99783 * 180.02562 * 21 20 18 46 46 H 1.09009 * 109.59039 * 295.77039 * 26 17 16 47 47 H 1.08998 * 109.71308 * 175.40240 * 26 17 16 48 48 H 1.09004 * 109.53501 * 46.09067 * 27 13 12 49 49 H 1.09002 * 109.53431 * 166.31191 * 27 13 12 50 50 H 1.08002 * 120.10004 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3538 1.5253 0.0005 5 6 4.1993 0.4239 0.0016 6 6 5.5706 0.5990 0.0027 7 6 6.1084 1.8700 0.0022 8 6 5.2665 2.9830 0.0001 9 6 5.8391 4.3463 -0.0010 10 8 5.1109 5.3114 0.1245 11 7 7.1683 4.5188 -0.1413 12 6 8.0700 5.6874 -0.0966 13 6 9.0204 4.8513 -0.9651 14 6 8.3068 3.6150 -0.4011 15 6 8.8098 5.0484 -2.4643 16 6 9.3660 6.4174 -2.8737 17 7 10.7502 6.5273 -2.3948 18 6 11.7664 6.8115 -3.2676 19 1 12.7442 6.3780 -3.1176 20 6 11.5398 7.6567 -4.3452 21 7 10.4376 8.3740 -4.3984 22 14 12.7992 7.7760 -5.7196 23 1 12.9796 6.4404 -6.3431 24 1 12.3243 8.7409 -6.7437 25 1 14.0952 8.2421 -5.1643 26 6 11.0292 6.3276 -0.9665 27 6 10.4842 4.9578 -0.5446 28 6 3.8827 2.8048 0.0059 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.7841 -0.5731 0.0016 35 1 6.2232 -0.2617 0.0039 36 1 7.1801 2.0032 0.0026 37 1 8.4596 5.9044 0.8981 38 1 7.6735 6.5683 -0.6013 39 1 8.0984 2.8488 -1.1479 40 1 8.7669 3.2160 0.5030 41 1 9.3324 4.2641 -3.0119 42 1 7.7446 5.0051 -2.6915 43 1 9.3466 6.5099 -3.9596 44 1 8.7609 7.2062 -2.4268 45 1 10.2791 8.9644 -5.1516 46 1 10.5405 7.1100 -0.3858 47 1 12.1049 6.3620 -0.7937 48 1 10.5611 4.8526 0.5376 49 1 11.0611 4.1708 -1.0303 50 1 3.2261 3.6623 0.0100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050679089.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:20 Heat of formation + Delta-G solvation = 15.569269 kcal Electronic energy + Delta-G solvation = -30054.852374 eV Core-core repulsion = 26049.418118 eV Total energy + Delta-G solvation = -4005.434256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.96264 -40.21472 -38.51553 -37.21718 -35.84149 -32.65682 -32.33486 -31.45127 -30.39562 -30.04786 -29.65770 -27.16040 -26.32509 -24.74334 -24.04542 -22.64543 -22.49345 -22.29783 -20.81526 -19.81020 -18.21589 -18.11772 -16.90553 -16.48222 -16.43245 -16.27162 -15.85899 -15.55863 -15.43943 -14.84029 -14.20793 -14.10159 -13.88281 -13.70384 -13.59544 -13.52786 -13.44930 -13.05849 -12.95148 -12.77755 -12.38289 -12.32533 -12.21165 -12.04536 -11.76942 -11.57908 -11.38086 -11.20076 -11.12060 -11.00273 -10.74446 -10.47645 -10.33985 -10.13686 -9.91353 -9.82078 -9.59086 -9.35927 -9.27965 -8.54339 -8.51013 -8.46582 -6.56657 -5.78649 -3.29121 0.64109 1.15889 2.66195 2.81571 3.02847 3.37751 3.43784 3.44231 3.70036 4.29003 4.42529 4.48616 4.49190 4.54798 4.64876 4.70256 4.82778 4.85624 5.01806 5.08253 5.19151 5.21332 5.26460 5.36116 5.37388 5.42670 5.51203 5.56077 5.60856 5.61468 5.67734 5.82684 5.93432 5.98170 6.06982 6.08228 6.10215 6.15450 6.28299 6.40721 6.43888 6.58955 6.61380 6.67496 6.82967 6.96315 7.09277 7.33522 7.64907 7.79554 7.80168 8.21805 8.50195 9.22856 9.83950 10.43811 11.29236 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.002131 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.544857 B =13137.493861 C =13379.858887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.314 6.314 4 C 0.121 3.879 5 C -0.189 4.189 6 C -0.088 4.088 7 C -0.135 4.135 8 C -0.085 4.085 9 C 0.576 3.424 10 O -0.538 6.538 11 N -0.631 5.631 12 C 0.118 3.882 13 C -0.072 4.072 14 C 0.094 3.906 15 C -0.117 4.117 16 C 0.176 3.824 17 N -0.589 5.589 18 C -0.258 4.258 19 H 0.062 0.938 20 C 0.008 3.992 21 N -0.900 5.900 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.146 3.854 27 C -0.120 4.120 28 C -0.095 4.095 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.083 0.917 44 H 0.020 0.980 45 H 0.255 0.745 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.054 0.946 49 H 0.065 0.935 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.601 -19.876 10.774 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.228 6.228 4 C 0.076 3.924 5 C -0.208 4.208 6 C -0.106 4.106 7 C -0.154 4.154 8 C -0.088 4.088 9 C 0.366 3.634 10 O -0.417 6.417 11 N -0.365 5.365 12 C -0.003 4.003 13 C -0.073 4.073 14 C -0.029 4.029 15 C -0.156 4.156 16 C 0.050 3.950 17 N -0.312 5.312 18 C -0.388 4.388 19 H 0.079 0.921 20 C -0.191 4.191 21 N -0.543 5.543 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.020 3.980 27 C -0.159 4.159 28 C -0.115 4.115 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.038 0.962 45 H 0.065 0.935 46 H 0.036 0.964 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.418 -19.087 10.725 25.678 hybrid contribution 0.611 -0.287 -0.687 0.963 sum -12.808 -19.374 10.038 25.301 Atomic orbital electron populations 1.21781 0.92609 1.02870 1.03728 1.22805 0.96039 0.81912 1.01369 1.86101 1.18695 1.29326 1.88722 1.18787 0.82549 0.93695 0.97402 1.21415 0.94507 0.98049 1.06815 1.20909 0.94270 0.97231 0.98211 1.21816 1.00963 0.91816 1.00769 1.19714 0.93084 0.93283 1.02677 1.17822 0.80673 0.88281 0.76646 1.90780 1.58582 1.41787 1.50527 1.49864 1.03916 1.12594 1.70133 1.23328 0.86416 0.90992 0.99597 1.22012 0.94938 0.93191 0.97158 1.23645 0.83957 0.95550 0.99719 1.21974 0.99650 1.02491 0.91516 1.20706 0.84286 0.89695 1.00349 1.43925 1.03853 1.82028 1.01344 1.19070 0.92227 1.22017 1.05504 0.92079 1.25235 0.97419 0.95827 1.00659 1.69982 1.26400 1.27047 1.30912 0.86387 0.81080 0.77402 0.81913 1.20965 1.21660 1.20825 1.20897 0.98080 0.92206 0.86862 1.21969 0.93658 1.01416 0.98906 1.20475 0.94077 0.95524 1.01409 0.91433 0.91375 0.90328 0.91957 0.92018 0.85239 0.85121 0.84078 0.89868 0.89494 0.89668 0.89566 0.92020 0.93072 0.89883 0.96212 0.93501 0.96372 0.92625 0.92701 0.91627 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.16 0.38 -0.43 16 2 C 0.05 0.37 5.46 37.16 0.20 0.57 16 3 O -0.31 -3.39 10.13 -19.43 -0.20 -3.58 16 4 C 0.12 1.39 6.68 -39.27 -0.26 1.12 16 5 C -0.19 -1.75 9.03 -39.35 -0.36 -2.10 16 6 C -0.09 -0.80 10.03 -39.66 -0.40 -1.19 16 7 C -0.14 -1.48 9.08 -39.17 -0.36 -1.83 16 8 C -0.08 -1.16 5.87 -104.99 -0.62 -1.78 16 9 C 0.58 9.52 7.99 -12.32 -0.10 9.43 16 10 O -0.54 -10.83 17.10 5.32 0.09 -10.74 16 11 N -0.63 -9.42 3.43 -181.32 -0.62 -10.04 16 12 C 0.12 1.84 7.62 -3.15 -0.02 1.81 16 13 C -0.07 -1.08 0.77 -154.43 -0.12 -1.20 16 14 C 0.09 1.12 5.34 -3.16 -0.02 1.11 16 15 C -0.12 -2.13 5.21 -26.73 -0.14 -2.26 16 16 C 0.18 4.05 5.16 -3.66 -0.02 4.03 16 17 N -0.59 -14.09 2.93 -172.20 -0.50 -14.59 16 18 C -0.26 -6.87 9.52 -15.06 -0.14 -7.02 16 19 H 0.06 1.60 7.86 -52.48 -0.41 1.18 16 20 C 0.01 0.22 4.98 -17.43 -0.09 0.14 16 21 N -0.90 -25.93 11.35 55.49 0.63 -25.30 16 22 Si 0.90 21.37 29.57 -169.99 -5.03 16.34 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.15 2.85 6.38 -3.65 -0.02 2.82 16 27 C -0.12 -1.80 5.26 -26.73 -0.14 -1.94 16 28 C -0.10 -1.29 9.53 -39.02 -0.37 -1.66 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 33 H 0.06 0.34 7.66 -51.92 -0.40 -0.05 16 34 H 0.13 0.85 6.28 -52.49 -0.33 0.52 16 35 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 36 H 0.14 1.34 4.06 -52.49 -0.21 1.13 16 37 H 0.08 1.15 8.07 -51.92 -0.42 0.73 16 38 H 0.09 1.56 7.41 -51.93 -0.38 1.18 16 39 H 0.09 0.93 6.81 -51.93 -0.35 0.58 16 40 H 0.09 0.83 8.01 -51.92 -0.42 0.41 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.92 8.01 -51.93 -0.42 0.51 16 43 H 0.08 2.18 6.29 -51.93 -0.33 1.85 16 44 H 0.02 0.49 7.49 -51.93 -0.39 0.10 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.02 0.36 8.08 -51.92 -0.42 -0.06 16 47 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 48 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 49 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.14 2.05 7.67 -52.49 -0.40 1.64 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -32.47 394.52 -10.05 -42.52 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.78 Total: -0.17 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.59 Total: -0.39 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.50 Total: -49.93 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.11 Total: -14.32 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.47 -10.05 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050679089.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.093 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds