Wall clock time and date at job start Wed Apr 1 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47504 * 2 1 4 4 C 1.35903 * 117.00506 * 179.97438 * 3 2 1 5 5 C 1.38854 * 119.98064 * 359.97438 * 4 3 2 6 6 C 1.38247 * 120.23547 * 180.02562 * 5 4 3 7 7 C 1.38011 * 120.20850 * 359.97438 * 6 5 4 8 8 C 1.39555 * 119.96377 * 359.97438 * 7 6 5 9 9 C 1.47864 * 120.11389 * 180.02562 * 8 7 6 10 10 O 1.21556 * 119.99758 * 186.95256 * 9 8 7 11 11 N 1.34770 * 120.00137 * 6.95372 * 9 8 7 12 12 C 1.47666 * 134.45579 * 184.94126 * 11 9 8 13 13 C 1.53510 * 85.98094 * 204.30963 * 12 11 9 14 14 C 1.47665 * 134.46075 * 4.93551 * 11 9 8 15 15 C 1.52668 * 113.56944 * 91.01564 * 13 12 11 16 16 C 1.53339 * 109.10949 * 73.80721 * 15 13 12 17 17 N 1.46883 * 108.75828 * 52.41117 * 16 15 13 18 18 C 1.36939 * 120.47097 * 124.44530 * 17 16 15 19 19 H 1.08004 * 119.99759 * 214.53465 * 18 17 16 20 20 C 1.38808 * 120.00029 * 34.52790 * 18 17 16 21 21 N 1.31618 * 119.99871 * 12.39308 * 20 18 17 22 22 Si 1.86796 * 120.00069 * 192.39220 * 20 18 17 23 23 H 1.48500 * 109.47511 * 59.99980 * 22 20 18 24 24 H 1.48504 * 109.47159 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47130 * 300.00279 * 22 20 18 26 26 C 1.46892 * 119.06476 * 304.45921 * 17 16 15 27 27 C 1.52668 * 113.56544 * 222.23261 * 13 12 11 28 28 C 1.38451 * 119.98934 * 180.25361 * 4 3 2 29 29 H 1.08995 * 109.46998 * 300.00430 * 1 2 3 30 30 H 1.09002 * 109.46367 * 60.00325 * 1 2 3 31 31 H 1.09000 * 109.46855 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47329 * 239.99287 * 2 1 3 33 33 H 1.09008 * 109.47028 * 119.99541 * 2 1 3 34 34 H 1.07999 * 119.88371 * 0.02562 * 5 4 3 35 35 H 1.08005 * 119.89556 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.01700 * 180.02562 * 7 6 5 37 37 H 1.09008 * 113.79295 * 90.04625 * 12 11 9 38 38 H 1.08994 * 113.79416 * 318.57595 * 12 11 9 39 39 H 1.09005 * 113.78775 * 41.41576 * 14 11 9 40 40 H 1.09009 * 113.79272 * 269.95575 * 14 11 9 41 41 H 1.09004 * 109.53356 * 193.69989 * 15 13 12 42 42 H 1.09003 * 109.53401 * 313.91892 * 15 13 12 43 43 H 1.09000 * 109.58964 * 172.18710 * 16 15 13 44 44 H 1.08995 * 109.58951 * 292.62275 * 16 15 13 45 45 H 0.97002 * 119.99783 * 180.02562 * 21 20 18 46 46 H 1.09009 * 109.59039 * 295.77039 * 26 17 16 47 47 H 1.08998 * 109.71308 * 175.40240 * 26 17 16 48 48 H 1.09004 * 109.53501 * 46.09067 * 27 13 12 49 49 H 1.09002 * 109.53431 * 166.31191 * 27 13 12 50 50 H 1.08002 * 120.10004 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3538 1.5253 0.0005 5 6 4.1993 0.4239 0.0016 6 6 5.5706 0.5990 0.0027 7 6 6.1084 1.8700 0.0022 8 6 5.2665 2.9830 0.0001 9 6 5.8391 4.3463 -0.0010 10 8 5.1109 5.3114 0.1245 11 7 7.1683 4.5188 -0.1413 12 6 8.0700 5.6874 -0.0966 13 6 9.0204 4.8513 -0.9651 14 6 8.3068 3.6150 -0.4011 15 6 8.8098 5.0484 -2.4643 16 6 9.3660 6.4174 -2.8737 17 7 10.7502 6.5273 -2.3948 18 6 11.7664 6.8115 -3.2676 19 1 12.7442 6.3780 -3.1176 20 6 11.5398 7.6567 -4.3452 21 7 10.4376 8.3740 -4.3984 22 14 12.7992 7.7760 -5.7196 23 1 12.9796 6.4404 -6.3431 24 1 12.3243 8.7409 -6.7437 25 1 14.0952 8.2421 -5.1643 26 6 11.0292 6.3276 -0.9665 27 6 10.4842 4.9578 -0.5446 28 6 3.8827 2.8048 0.0059 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.7841 -0.5731 0.0016 35 1 6.2232 -0.2617 0.0039 36 1 7.1801 2.0032 0.0026 37 1 8.4596 5.9044 0.8981 38 1 7.6735 6.5683 -0.6013 39 1 8.0984 2.8488 -1.1479 40 1 8.7669 3.2160 0.5030 41 1 9.3324 4.2641 -3.0119 42 1 7.7446 5.0051 -2.6915 43 1 9.3466 6.5099 -3.9596 44 1 8.7609 7.2062 -2.4268 45 1 10.2791 8.9644 -5.1516 46 1 10.5405 7.1100 -0.3858 47 1 12.1049 6.3620 -0.7937 48 1 10.5611 4.8526 0.5376 49 1 11.0611 4.1708 -1.0303 50 1 3.2261 3.6623 0.0100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050679089.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:19 Heat of formation + Delta-G solvation = -3.930435 kcal Electronic energy + Delta-G solvation = -30055.697945 eV Core-core repulsion = 26049.418118 eV Total energy + Delta-G solvation = -4006.279827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.10069 -41.08710 -39.69451 -38.14511 -37.49145 -34.32458 -32.97855 -32.53482 -31.77877 -31.58081 -30.59036 -28.59809 -27.43872 -26.13465 -25.13990 -23.95127 -23.44218 -23.32531 -22.34028 -20.79780 -19.64824 -19.15977 -18.30547 -17.75154 -17.20150 -17.10279 -16.97678 -16.80518 -16.62637 -16.35893 -15.65147 -15.41768 -15.15092 -14.95304 -14.79937 -14.59210 -14.43328 -14.27445 -13.92789 -13.86349 -13.42279 -13.37965 -13.16326 -13.05251 -12.95227 -12.87035 -12.84542 -12.60741 -12.53772 -12.21927 -12.04698 -11.91527 -11.79818 -11.67397 -11.40279 -11.25264 -11.20948 -10.73441 -10.52041 -10.16803 -9.70349 -9.30819 -8.54048 -7.84065 -5.37780 -0.25925 0.35966 1.48054 1.49864 1.56629 1.65347 1.75755 2.23847 2.52796 2.78213 3.25911 3.30867 3.41761 3.71936 3.76277 3.89392 3.95157 3.99850 4.06305 4.11562 4.14655 4.25367 4.26893 4.36021 4.41319 4.46756 4.48242 4.58197 4.64624 4.73094 4.76345 4.84240 4.88973 4.90371 4.92882 4.93365 5.09287 5.13651 5.15372 5.24400 5.28707 5.30016 5.33351 5.33829 5.44213 5.55182 5.65633 5.68993 5.76218 6.39021 6.45757 6.63087 6.99878 7.19484 7.90069 8.44107 9.20969 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.002131 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.544857 B =13137.493861 C =13379.858887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.339 6.339 4 C 0.114 3.886 5 C -0.177 4.177 6 C -0.077 4.077 7 C -0.131 4.131 8 C -0.105 4.105 9 C 0.567 3.433 10 O -0.595 6.595 11 N -0.632 5.632 12 C 0.112 3.888 13 C -0.073 4.073 14 C 0.111 3.889 15 C -0.102 4.102 16 C 0.185 3.815 17 N -0.606 5.606 18 C -0.261 4.261 19 H 0.069 0.931 20 C -0.051 4.051 21 N -0.939 5.939 22 Si 0.967 3.033 23 H -0.274 1.274 24 H -0.300 1.300 25 H -0.273 1.273 26 C 0.138 3.862 27 C -0.103 4.103 28 C -0.125 4.125 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.161 0.839 37 H 0.107 0.893 38 H 0.046 0.954 39 H 0.105 0.895 40 H 0.132 0.868 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.042 0.958 44 H -0.014 1.014 45 H 0.248 0.752 46 H 0.009 0.991 47 H 0.058 0.942 48 H 0.097 0.903 49 H 0.076 0.924 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.951 -25.026 12.239 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 O -0.253 6.253 4 C 0.069 3.931 5 C -0.196 4.196 6 C -0.094 4.094 7 C -0.149 4.149 8 C -0.108 4.108 9 C 0.359 3.641 10 O -0.478 6.478 11 N -0.365 5.365 12 C -0.011 4.011 13 C -0.074 4.074 14 C -0.009 4.009 15 C -0.141 4.141 16 C 0.059 3.941 17 N -0.330 5.330 18 C -0.391 4.391 19 H 0.086 0.914 20 C -0.247 4.247 21 N -0.584 5.584 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.227 1.227 25 H -0.199 1.199 26 C 0.012 3.988 27 C -0.142 4.142 28 C -0.145 4.145 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.181 0.819 35 H 0.191 0.809 36 H 0.178 0.822 37 H 0.125 0.875 38 H 0.065 0.935 39 H 0.123 0.877 40 H 0.149 0.851 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.004 0.996 45 H 0.057 0.943 46 H 0.027 0.973 47 H 0.076 0.924 48 H 0.115 0.885 49 H 0.094 0.906 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.729 -24.290 12.215 29.610 hybrid contribution 0.049 1.305 -1.108 1.713 sum -11.680 -22.984 11.107 28.073 Atomic orbital electron populations 1.21829 0.91892 1.04286 1.02922 1.23151 0.96735 0.80327 1.02852 1.86090 1.18551 1.32017 1.88678 1.18854 0.83325 0.93518 0.97416 1.21831 0.94579 0.98633 1.04519 1.21397 0.94601 0.97614 0.95806 1.22026 1.01426 0.91524 0.99962 1.19553 0.93404 0.92539 1.05289 1.18406 0.80846 0.89083 0.75772 1.90737 1.59967 1.43766 1.53283 1.49950 1.04054 1.13196 1.69254 1.23373 0.86871 0.90223 1.00589 1.21876 0.95476 0.95505 0.94505 1.23836 0.81317 0.93990 1.01804 1.21690 0.98777 0.99129 0.94479 1.20402 0.84294 0.91803 0.97610 1.44182 1.03310 1.82281 1.03207 1.19463 0.92972 1.20917 1.05757 0.91370 1.26023 0.99282 0.96091 1.03271 1.70172 1.28536 1.28335 1.31365 0.85356 0.78964 0.77308 0.78881 1.20025 1.22653 1.19869 1.21118 0.98553 0.94961 0.84127 1.21818 0.92669 0.98180 1.01517 1.20393 0.94187 0.96007 1.03934 0.92158 0.92320 0.87731 0.90480 0.90265 0.81857 0.80880 0.82184 0.87470 0.93489 0.87672 0.85051 0.91230 0.93729 0.93922 0.99594 0.94348 0.97285 0.92376 0.88452 0.90568 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 71.98 0.74 -0.64 16 2 C 0.04 0.49 5.46 71.98 0.39 0.88 16 3 O -0.34 -7.15 10.13 -92.45 -0.94 -8.08 16 4 C 0.11 2.51 6.68 22.47 0.15 2.66 16 5 C -0.18 -2.57 9.03 22.42 0.20 -2.37 16 6 C -0.08 -0.99 10.03 22.22 0.22 -0.76 16 7 C -0.13 -2.38 9.08 22.53 0.20 -2.17 16 8 C -0.10 -2.85 5.87 -20.10 -0.12 -2.97 16 9 C 0.57 19.28 7.99 86.79 0.69 19.97 16 10 O -0.59 -25.90 17.10 -3.89 -0.07 -25.96 16 11 N -0.63 -18.19 3.43 -845.84 -2.90 -21.09 16 12 C 0.11 3.44 7.62 86.32 0.66 4.10 16 13 C -0.07 -2.03 0.77 -52.04 -0.04 -2.07 16 14 C 0.11 2.17 5.34 86.31 0.46 2.63 16 15 C -0.10 -3.69 5.21 30.60 0.16 -3.53 16 16 C 0.18 8.98 5.16 86.42 0.45 9.42 16 17 N -0.61 -29.46 2.93 -698.72 -2.05 -31.50 16 18 C -0.26 -14.00 9.52 84.03 0.80 -13.20 16 19 H 0.07 3.51 7.86 -2.91 -0.02 3.49 16 20 C -0.05 -2.87 4.98 84.86 0.42 -2.44 16 21 N -0.94 -56.83 11.35 21.65 0.25 -56.58 16 22 Si 0.97 44.76 29.57 68.60 2.03 46.79 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 26 C 0.14 5.21 6.38 86.42 0.55 5.77 16 27 C -0.10 -2.70 5.26 30.60 0.16 -2.54 16 28 C -0.13 -3.54 9.53 22.63 0.22 -3.33 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.08 0.64 7.66 -2.39 -0.02 0.62 16 33 H 0.08 0.61 7.66 -2.38 -0.02 0.59 16 34 H 0.16 1.23 6.28 -2.91 -0.02 1.22 16 35 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.16 2.16 4.06 -2.91 -0.01 2.15 16 37 H 0.11 2.78 8.07 -2.38 -0.02 2.76 16 38 H 0.05 1.82 7.41 -2.39 -0.02 1.80 16 39 H 0.11 1.73 6.81 -2.38 -0.02 1.72 16 40 H 0.13 1.56 8.01 -2.38 -0.02 1.54 16 41 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 42 H 0.04 1.66 8.01 -2.39 -0.02 1.64 16 43 H 0.04 2.38 6.29 -2.39 -0.02 2.37 16 44 H -0.01 -0.76 7.49 -2.39 -0.02 -0.77 16 45 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 46 H 0.01 0.36 8.08 -2.38 -0.02 0.34 16 47 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 48 H 0.10 1.84 8.12 -2.38 -0.02 1.82 16 49 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.11 3.71 7.67 -2.91 -0.02 3.69 16 Total: -1.00 -79.28 394.52 3.58 -75.70 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.94 Total: 11.33 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 6.32 Total: 9.40 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -4.70 Total: -109.18 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.00 Total: -34.05 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -79.28 3.58 -75.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050679089.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.771 kcal (2) G-P(sol) polarization free energy of solvation -79.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds