Wall clock time and date at job start Wed Apr 1 2020 03:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.47353 * 2 1 4 4 C 1.42890 * 114.00132 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.56682 * 4.30312 * 4 3 2 6 6 C 1.53001 * 117.50180 * 218.60741 * 4 3 2 7 7 C 1.52999 * 60.03414 * 252.52812 * 6 4 3 8 8 H 1.08992 * 117.50343 * 107.47994 * 7 6 4 9 9 C 1.50701 * 117.49178 * 252.47609 * 7 6 4 10 10 O 1.21281 * 120.00648 * 68.61238 * 9 7 6 11 11 N 1.34779 * 119.99646 * 248.60225 * 9 7 6 12 12 C 1.46501 * 120.00017 * 180.02562 * 11 9 7 13 13 C 1.50698 * 109.47345 * 180.02562 * 12 11 9 14 14 C 1.37958 * 119.70874 * 259.73066 * 13 12 11 15 15 C 1.38221 * 119.82468 * 179.70911 * 14 13 12 16 16 C 1.38001 * 119.72043 * 0.81993 * 15 14 13 17 17 C 1.38793 * 120.49680 * 359.65888 * 16 15 14 18 18 C 1.37713 * 119.85548 * 359.59812 * 17 16 15 19 19 C 1.50596 * 122.85654 * 181.39215 * 18 17 16 20 20 C 1.52788 * 110.85736 * 339.76562 * 19 18 17 21 21 N 1.47232 * 107.92790 * 47.46213 * 20 19 18 22 22 C 1.36928 * 121.33304 * 115.80805 * 21 20 19 23 23 H 1.08003 * 120.00502 * 335.36857 * 22 21 20 24 24 C 1.38816 * 119.99925 * 155.36888 * 22 21 20 25 25 N 1.31615 * 119.99838 * 344.27187 * 24 22 21 26 26 Si 1.86801 * 120.00149 * 164.27070 * 24 22 21 27 27 H 1.48493 * 109.47291 * 90.00185 * 26 24 22 28 28 H 1.48501 * 109.47213 * 210.00123 * 26 24 22 29 29 H 1.48500 * 109.46988 * 329.99853 * 26 24 22 30 30 C 1.46683 * 117.32792 * 295.78424 * 21 20 19 31 31 H 1.08998 * 109.47548 * 59.99601 * 1 2 3 32 32 H 1.08996 * 109.46981 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46636 * 299.99804 * 1 2 3 34 34 H 1.08997 * 109.47182 * 240.00655 * 2 1 3 35 35 H 1.08998 * 109.47548 * 120.00399 * 2 1 3 36 36 H 1.09002 * 117.49929 * 145.01933 * 6 4 3 37 37 H 1.09005 * 117.49585 * 0.03165 * 6 4 3 38 38 H 0.96997 * 120.00408 * 0.02562 * 11 9 7 39 39 H 1.09005 * 109.47629 * 300.00558 * 12 11 9 40 40 H 1.09003 * 109.46990 * 60.00248 * 12 11 9 41 41 H 1.07999 * 120.08682 * 0.02562 * 14 13 12 42 42 H 1.08009 * 120.13903 * 180.51392 * 15 14 13 43 43 H 1.07997 * 119.75233 * 179.68547 * 16 15 14 44 44 H 1.08990 * 109.20247 * 100.12471 * 19 18 17 45 45 H 1.08997 * 109.19661 * 219.41441 * 19 18 17 46 46 H 1.08999 * 109.76509 * 287.84938 * 20 19 18 47 47 H 1.09001 * 109.81014 * 167.09410 * 20 19 18 48 48 H 0.97000 * 120.00247 * 179.97438 * 25 24 22 49 49 H 1.08997 * 109.43857 * 284.40922 * 30 21 20 50 50 H 1.08994 * 109.43430 * 164.52872 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9771 0.5199 -0.0747 6 6 4.0518 2.5730 0.8461 7 6 4.0421 2.6885 -0.6795 8 1 3.3575 3.4099 -1.1253 9 6 5.3535 2.5061 -1.3993 10 8 5.8847 1.4161 -1.4252 11 7 5.9360 3.5544 -2.0144 12 6 7.2105 3.3770 -2.7146 13 6 7.6432 4.6916 -3.3109 14 6 7.4337 4.9359 -4.6525 15 6 7.8242 6.1432 -5.2006 16 6 8.4368 7.0896 -4.4048 17 6 8.6571 6.8409 -3.0572 18 6 8.2548 5.6447 -2.5061 19 6 8.4324 5.3166 -1.0471 20 6 9.5078 6.2007 -0.4176 21 7 9.2429 7.5921 -0.8194 22 6 8.9155 8.5496 0.1031 23 1 8.4640 8.2634 1.0416 24 6 9.1639 9.8882 -0.1678 25 7 9.9783 10.2214 -1.1465 26 14 8.3421 11.2166 0.8566 27 1 9.2037 11.5489 2.0195 28 1 8.1431 12.4308 0.0251 29 1 7.0262 10.7263 1.3394 30 6 9.3444 7.9117 -2.2474 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 5.0065 2.3647 1.3292 37 1 3.3737 3.2188 1.4041 38 1 5.5113 4.4262 -1.9935 39 1 7.9672 3.0314 -2.0102 40 1 7.0894 2.6399 -3.5085 41 1 6.9611 4.1877 -5.2716 42 1 7.6550 6.3430 -6.2485 43 1 8.7467 8.0311 -4.8337 44 1 7.4880 5.4751 -0.5265 45 1 8.7244 4.2712 -0.9478 46 1 10.4915 5.8948 -0.7739 47 1 9.4664 6.1162 0.6683 48 1 10.1517 11.1567 -1.3362 49 1 10.3948 7.9648 -2.5335 50 1 8.8678 8.8731 -2.4386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051279543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:59 Heat of formation + Delta-G solvation = -11.015412 kcal Electronic energy + Delta-G solvation = -29730.841527 eV Core-core repulsion = 25724.254473 eV Total energy + Delta-G solvation = -4006.587055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.29535 -39.50221 -38.32257 -36.04736 -35.41284 -34.84740 -32.76226 -31.72028 -31.11347 -30.15315 -28.89898 -26.48076 -25.57790 -23.73313 -23.22776 -23.15928 -22.33387 -22.14069 -20.54899 -20.11787 -19.02923 -17.95564 -16.82313 -16.73933 -16.14188 -15.86974 -15.80583 -15.48966 -15.01094 -14.87122 -14.54173 -14.32095 -14.16117 -13.62471 -13.31632 -13.10687 -13.05400 -12.91100 -12.73804 -12.65202 -12.56183 -12.38583 -12.32120 -11.97679 -11.55749 -11.53685 -11.30107 -11.27013 -10.97317 -10.89086 -10.79792 -10.72757 -10.40534 -10.17642 -10.04695 -9.91780 -9.76223 -9.47104 -9.06930 -8.71103 -8.29098 -7.90759 -6.81325 -5.86803 -3.26331 1.58371 1.84989 2.38710 2.87575 3.33851 3.41097 3.43032 3.43167 3.67065 4.19567 4.43471 4.49197 4.57765 4.69978 4.73844 4.79701 4.93689 4.96014 5.03887 5.12077 5.19151 5.24296 5.29597 5.39240 5.42512 5.49205 5.52236 5.53852 5.55516 5.68840 5.75735 5.76942 5.81520 5.96688 6.09458 6.11413 6.19722 6.36465 6.45822 6.52705 6.63268 6.81353 6.82749 6.88971 6.92419 7.08250 7.18463 7.42294 7.46832 7.58295 7.72238 8.14781 8.31451 9.12243 9.74700 10.32752 11.23714 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.002596 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.905775 B =10782.970600 C =12373.736881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.357 6.357 4 C 0.052 3.948 5 H 0.124 0.876 6 C -0.152 4.152 7 C -0.194 4.194 8 H 0.129 0.871 9 C 0.545 3.455 10 O -0.549 6.549 11 N -0.713 5.713 12 C 0.166 3.834 13 C -0.125 4.125 14 C -0.118 4.118 15 C -0.132 4.132 16 C -0.113 4.113 17 C -0.077 4.077 18 C -0.046 4.046 19 C -0.099 4.099 20 C 0.141 3.859 21 N -0.593 5.593 22 C -0.248 4.248 23 H 0.069 0.931 24 C 0.000 4.000 25 N -0.908 5.908 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.279 1.279 30 C 0.205 3.795 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.405 0.595 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.026 0.974 47 H 0.060 0.940 48 H 0.255 0.745 49 H 0.041 0.959 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.892 -16.589 -2.635 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.275 6.275 4 C -0.007 4.007 5 H 0.142 0.858 6 C -0.190 4.190 7 C -0.215 4.215 8 H 0.147 0.853 9 C 0.331 3.669 10 O -0.427 6.427 11 N -0.363 5.363 12 C 0.043 3.957 13 C -0.126 4.126 14 C -0.136 4.136 15 C -0.150 4.150 16 C -0.132 4.132 17 C -0.079 4.079 18 C -0.047 4.047 19 C -0.137 4.137 20 C 0.015 3.985 21 N -0.315 5.315 22 C -0.377 4.377 23 H 0.087 0.913 24 C -0.198 4.198 25 N -0.553 5.553 26 Si 0.734 3.266 27 H -0.214 1.214 28 H -0.215 1.215 29 H -0.205 1.205 30 C 0.079 3.921 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.240 0.760 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.058 0.942 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.576 -17.026 -2.680 21.336 hybrid contribution -0.429 1.178 0.194 1.269 sum -13.005 -15.848 -2.485 20.651 Atomic orbital electron populations 1.21759 0.93519 1.02412 1.03233 1.22572 0.95538 0.83227 1.00579 1.87817 1.18619 1.27119 1.93978 1.22611 0.81898 0.94287 1.01874 0.85802 1.23452 1.03132 1.01746 0.90688 1.22686 0.97428 1.04495 0.96919 0.85310 1.19549 0.85084 0.84046 0.78193 1.90681 1.65234 1.25570 1.61229 1.46018 1.23576 1.12414 1.54337 1.20175 0.85071 0.94468 0.95960 1.19784 1.02877 0.95688 0.94215 1.20758 1.01275 0.97317 0.94299 1.20940 1.00547 0.94173 0.99330 1.21198 0.99030 0.99302 0.93629 1.21045 0.96333 0.96062 0.94425 1.19450 0.96868 0.92765 0.95584 1.21031 1.01564 0.99224 0.91925 1.20913 0.94217 0.85729 0.97659 1.43991 1.80895 1.04365 1.02225 1.19148 1.33330 0.86278 0.98950 0.91308 1.25013 0.98056 0.97873 0.98830 1.69997 1.35837 1.16655 1.32803 0.86261 0.79406 0.81458 0.79462 1.21357 1.21523 1.20478 1.19771 0.96651 0.93763 0.81874 0.91775 0.90903 0.91762 0.92931 0.92914 0.87297 0.87014 0.76002 0.90411 0.91213 0.86864 0.86650 0.86234 0.91147 0.91996 0.95584 0.92110 0.93500 0.94156 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.45 6.53 37.16 0.24 0.69 16 3 O -0.36 -3.76 10.60 -35.23 -0.37 -4.14 16 4 C 0.05 0.54 5.96 -26.69 -0.16 0.38 16 5 H 0.12 1.30 7.46 -51.93 -0.39 0.92 16 6 C -0.15 -1.49 10.18 -26.73 -0.27 -1.76 16 7 C -0.19 -2.09 6.14 -91.73 -0.56 -2.65 16 8 H 0.13 1.26 8.14 -51.93 -0.42 0.83 16 9 C 0.54 7.11 7.61 -10.98 -0.08 7.02 16 10 O -0.55 -8.78 16.26 5.56 0.09 -8.69 16 11 N -0.71 -8.85 5.52 -61.47 -0.34 -9.19 16 12 C 0.17 2.21 5.11 -5.19 -0.03 2.18 16 13 C -0.13 -1.85 5.25 -104.47 -0.55 -2.40 16 14 C -0.12 -1.63 9.65 -39.69 -0.38 -2.02 16 15 C -0.13 -1.89 10.05 -39.67 -0.40 -2.29 16 16 C -0.11 -1.91 9.62 -39.46 -0.38 -2.29 16 17 C -0.08 -1.50 5.82 -104.55 -0.61 -2.11 16 18 C -0.05 -0.81 5.76 -104.61 -0.60 -1.41 16 19 C -0.10 -1.70 5.24 -28.04 -0.15 -1.85 16 20 C 0.14 2.88 6.52 -3.75 -0.02 2.86 16 21 N -0.59 -14.46 2.97 -173.94 -0.52 -14.97 16 22 C -0.25 -6.60 9.69 -15.06 -0.15 -6.75 16 23 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 24 C 0.00 0.01 4.99 -17.43 -0.09 -0.08 16 25 N -0.91 -25.55 11.10 55.49 0.62 -24.93 16 26 Si 0.90 21.23 29.58 -169.99 -5.03 16.21 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 C 0.20 4.78 4.86 -5.04 -0.02 4.76 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.41 4.70 8.46 -40.82 -0.35 4.35 16 39 H 0.08 1.09 6.34 -51.93 -0.33 0.77 16 40 H 0.07 0.90 7.98 -51.93 -0.41 0.48 16 41 H 0.11 1.32 8.02 -52.49 -0.42 0.89 16 42 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 43 H 0.12 1.91 8.05 -52.49 -0.42 1.48 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.06 0.96 6.26 -51.93 -0.33 0.63 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 48 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.10 2.50 6.34 -51.93 -0.33 2.17 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -30.68 407.30 -11.25 -41.93 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.01 Total: 5.91 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -3.83 Total: -8.27 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.24 Total: -49.09 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.28 Total: -12.82 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.68 -11.25 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051279543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.919 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds