Wall clock time and date at job start Wed Apr 1 2020 03:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.47353 * 2 1 4 4 C 1.42890 * 114.00132 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.56682 * 4.30312 * 4 3 2 6 6 C 1.53001 * 117.50180 * 218.60741 * 4 3 2 7 7 C 1.52999 * 60.03414 * 252.52812 * 6 4 3 8 8 H 1.08992 * 117.50343 * 107.47994 * 7 6 4 9 9 C 1.50701 * 117.49178 * 252.47609 * 7 6 4 10 10 O 1.21281 * 120.00648 * 68.61238 * 9 7 6 11 11 N 1.34779 * 119.99646 * 248.60225 * 9 7 6 12 12 C 1.46501 * 120.00017 * 180.02562 * 11 9 7 13 13 C 1.50698 * 109.47345 * 180.02562 * 12 11 9 14 14 C 1.37958 * 119.70874 * 259.73066 * 13 12 11 15 15 C 1.38221 * 119.82468 * 179.70911 * 14 13 12 16 16 C 1.38001 * 119.72043 * 0.81993 * 15 14 13 17 17 C 1.38793 * 120.49680 * 359.65888 * 16 15 14 18 18 C 1.37713 * 119.85548 * 359.59812 * 17 16 15 19 19 C 1.50596 * 122.85654 * 181.39215 * 18 17 16 20 20 C 1.52788 * 110.85736 * 339.76562 * 19 18 17 21 21 N 1.47232 * 107.92790 * 47.46213 * 20 19 18 22 22 C 1.36928 * 121.33304 * 115.80805 * 21 20 19 23 23 H 1.08003 * 120.00502 * 335.36857 * 22 21 20 24 24 C 1.38816 * 119.99925 * 155.36888 * 22 21 20 25 25 N 1.31615 * 119.99838 * 344.27187 * 24 22 21 26 26 Si 1.86801 * 120.00149 * 164.27070 * 24 22 21 27 27 H 1.48493 * 109.47291 * 90.00185 * 26 24 22 28 28 H 1.48501 * 109.47213 * 210.00123 * 26 24 22 29 29 H 1.48500 * 109.46988 * 329.99853 * 26 24 22 30 30 C 1.46683 * 117.32792 * 295.78424 * 21 20 19 31 31 H 1.08998 * 109.47548 * 59.99601 * 1 2 3 32 32 H 1.08996 * 109.46981 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46636 * 299.99804 * 1 2 3 34 34 H 1.08997 * 109.47182 * 240.00655 * 2 1 3 35 35 H 1.08998 * 109.47548 * 120.00399 * 2 1 3 36 36 H 1.09002 * 117.49929 * 145.01933 * 6 4 3 37 37 H 1.09005 * 117.49585 * 0.03165 * 6 4 3 38 38 H 0.96997 * 120.00408 * 0.02562 * 11 9 7 39 39 H 1.09005 * 109.47629 * 300.00558 * 12 11 9 40 40 H 1.09003 * 109.46990 * 60.00248 * 12 11 9 41 41 H 1.07999 * 120.08682 * 0.02562 * 14 13 12 42 42 H 1.08009 * 120.13903 * 180.51392 * 15 14 13 43 43 H 1.07997 * 119.75233 * 179.68547 * 16 15 14 44 44 H 1.08990 * 109.20247 * 100.12471 * 19 18 17 45 45 H 1.08997 * 109.19661 * 219.41441 * 19 18 17 46 46 H 1.08999 * 109.76509 * 287.84938 * 20 19 18 47 47 H 1.09001 * 109.81014 * 167.09410 * 20 19 18 48 48 H 0.97000 * 120.00247 * 179.97438 * 25 24 22 49 49 H 1.08997 * 109.43857 * 284.40922 * 30 21 20 50 50 H 1.08994 * 109.43430 * 164.52872 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9771 0.5199 -0.0747 6 6 4.0518 2.5730 0.8461 7 6 4.0421 2.6885 -0.6795 8 1 3.3575 3.4099 -1.1253 9 6 5.3535 2.5061 -1.3993 10 8 5.8847 1.4161 -1.4252 11 7 5.9360 3.5544 -2.0144 12 6 7.2105 3.3770 -2.7146 13 6 7.6432 4.6916 -3.3109 14 6 7.4337 4.9359 -4.6525 15 6 7.8242 6.1432 -5.2006 16 6 8.4368 7.0896 -4.4048 17 6 8.6571 6.8409 -3.0572 18 6 8.2548 5.6447 -2.5061 19 6 8.4324 5.3166 -1.0471 20 6 9.5078 6.2007 -0.4176 21 7 9.2429 7.5921 -0.8194 22 6 8.9155 8.5496 0.1031 23 1 8.4640 8.2634 1.0416 24 6 9.1639 9.8882 -0.1678 25 7 9.9783 10.2214 -1.1465 26 14 8.3421 11.2166 0.8566 27 1 9.2037 11.5489 2.0195 28 1 8.1431 12.4308 0.0251 29 1 7.0262 10.7263 1.3394 30 6 9.3444 7.9117 -2.2474 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 5.0065 2.3647 1.3292 37 1 3.3737 3.2188 1.4041 38 1 5.5113 4.4262 -1.9935 39 1 7.9672 3.0314 -2.0102 40 1 7.0894 2.6399 -3.5085 41 1 6.9611 4.1877 -5.2716 42 1 7.6550 6.3430 -6.2485 43 1 8.7467 8.0311 -4.8337 44 1 7.4880 5.4751 -0.5265 45 1 8.7244 4.2712 -0.9478 46 1 10.4915 5.8948 -0.7739 47 1 9.4664 6.1162 0.6683 48 1 10.1517 11.1567 -1.3362 49 1 10.3948 7.9648 -2.5335 50 1 8.8678 8.8731 -2.4386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051279543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:57 Heat of formation + Delta-G solvation = -28.372481 kcal Electronic energy + Delta-G solvation = -29731.594186 eV Core-core repulsion = 25724.254473 eV Total energy + Delta-G solvation = -4007.339714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.38194 -40.69543 -39.16620 -37.66429 -36.32176 -35.88889 -34.46341 -33.11121 -31.77747 -31.71310 -30.38607 -27.64628 -27.36954 -24.85209 -24.62365 -23.79922 -23.75275 -23.09651 -21.75580 -21.14461 -20.60076 -18.80764 -18.64669 -17.72037 -17.14192 -17.11130 -16.72801 -16.52532 -16.49366 -16.02195 -15.89635 -15.63462 -15.40059 -15.16141 -14.73389 -14.47707 -14.13079 -14.01897 -13.75717 -13.73223 -13.46666 -13.37616 -13.33033 -13.25248 -13.05551 -12.80979 -12.73780 -12.52252 -12.39456 -12.18319 -12.16340 -11.90425 -11.85087 -11.63290 -11.59918 -11.33734 -11.06804 -10.67947 -10.23426 -10.11010 -9.55592 -9.32729 -8.77924 -7.91096 -5.33550 0.34250 0.56015 1.41960 1.46222 1.47645 1.57199 1.99909 2.49261 2.59076 2.82068 2.97129 3.26211 3.61207 3.64449 3.70267 3.79354 3.93039 4.01126 4.02338 4.05709 4.15694 4.18454 4.32853 4.34009 4.38855 4.46345 4.51274 4.55729 4.61532 4.73520 4.76807 4.80426 4.82264 4.90408 4.98647 5.00334 5.02751 5.12480 5.14534 5.17524 5.27600 5.34645 5.39583 5.44855 5.58755 5.63225 5.69850 5.94593 6.16058 6.19052 6.31354 6.48735 7.09946 7.15299 7.78855 8.34110 9.17764 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.002596 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.905775 B =10782.970600 C =12373.736881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.371 6.371 4 C 0.052 3.948 5 H 0.120 0.880 6 C -0.145 4.145 7 C -0.198 4.198 8 H 0.141 0.859 9 C 0.547 3.453 10 O -0.580 6.580 11 N -0.707 5.707 12 C 0.171 3.829 13 C -0.115 4.115 14 C -0.104 4.104 15 C -0.121 4.121 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.058 4.058 19 C -0.084 4.084 20 C 0.136 3.864 21 N -0.611 5.611 22 C -0.257 4.257 23 H 0.072 0.928 24 C -0.053 4.053 25 N -0.939 5.939 26 Si 0.969 3.031 27 H -0.285 1.285 28 H -0.293 1.293 29 H -0.270 1.270 30 C 0.221 3.779 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.118 0.882 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.021 0.979 47 H 0.063 0.937 48 H 0.251 0.749 49 H 0.005 0.995 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.128 -18.451 -3.221 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.290 6.290 4 C -0.007 4.007 5 H 0.138 0.862 6 C -0.182 4.182 7 C -0.219 4.219 8 H 0.158 0.842 9 C 0.335 3.665 10 O -0.461 6.461 11 N -0.357 5.357 12 C 0.048 3.952 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.139 4.139 16 C -0.142 4.142 17 C -0.109 4.109 18 C -0.059 4.059 19 C -0.123 4.123 20 C 0.011 3.989 21 N -0.334 5.334 22 C -0.387 4.387 23 H 0.090 0.910 24 C -0.248 4.248 25 N -0.585 5.585 26 Si 0.797 3.203 27 H -0.211 1.211 28 H -0.219 1.219 29 H -0.194 1.194 30 C 0.095 3.905 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.140 0.860 38 H 0.246 0.754 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.166 0.834 42 H 0.167 0.833 43 H 0.136 0.864 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.039 0.961 47 H 0.082 0.918 48 H 0.060 0.940 49 H 0.022 0.978 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.827 -18.905 -3.261 24.246 hybrid contribution 0.272 1.651 0.329 1.705 sum -14.554 -17.254 -2.932 22.763 Atomic orbital electron populations 1.21776 0.92370 1.03624 1.02863 1.22793 0.96510 0.82247 1.01178 1.87799 1.18459 1.28732 1.94045 1.22589 0.82072 0.94116 1.01960 0.86207 1.23501 1.03258 1.01424 0.90039 1.22683 0.96547 1.05253 0.97425 0.84167 1.19847 0.85479 0.83481 0.77742 1.90668 1.66230 1.26755 1.62429 1.45957 1.23186 1.12615 1.53983 1.20104 0.85260 0.93619 0.96199 1.19831 1.01843 0.95369 0.94500 1.21183 0.99505 0.97569 0.94017 1.21274 0.98664 0.93386 1.00584 1.21285 0.99671 1.00252 0.92959 1.20687 0.98960 0.96055 0.95239 1.19476 0.97720 0.92814 0.95897 1.20844 1.00161 0.99431 0.91824 1.21074 0.95248 0.84426 0.98171 1.44244 1.81148 1.05518 1.02442 1.19484 1.32735 0.87128 0.99373 0.91034 1.25783 0.98880 0.99880 1.00257 1.70168 1.37342 1.16526 1.34503 0.85253 0.78698 0.78571 0.77810 1.21126 1.21914 1.19437 1.19322 0.94851 0.94025 0.82260 0.92274 0.88932 0.91958 0.92707 0.91971 0.87270 0.85962 0.75359 0.91059 0.89988 0.83370 0.83262 0.86430 0.91119 0.89791 0.96080 0.91827 0.94034 0.97757 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 71.98 0.74 -0.88 16 2 C 0.05 0.69 6.53 71.98 0.47 1.16 16 3 O -0.37 -7.26 10.60 -148.98 -1.58 -8.84 16 4 C 0.05 1.00 5.96 30.62 0.18 1.18 16 5 H 0.12 2.40 7.46 -2.39 -0.02 2.38 16 6 C -0.14 -2.56 10.18 30.59 0.31 -2.25 16 7 C -0.20 -3.89 6.14 -11.51 -0.07 -3.96 16 8 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 9 C 0.55 13.16 7.61 87.66 0.67 13.83 16 10 O -0.58 -17.61 16.26 -3.03 -0.05 -17.66 16 11 N -0.71 -15.75 5.52 -466.78 -2.58 -18.33 16 12 C 0.17 4.05 5.11 85.63 0.44 4.49 16 13 C -0.11 -3.09 5.25 -19.77 -0.10 -3.19 16 14 C -0.10 -2.47 9.65 22.20 0.21 -2.26 16 15 C -0.12 -3.10 10.05 22.21 0.22 -2.88 16 16 C -0.12 -4.10 9.62 22.35 0.22 -3.88 16 17 C -0.11 -4.27 5.82 -19.82 -0.12 -4.38 16 18 C -0.06 -1.99 5.76 -19.86 -0.11 -2.11 16 19 C -0.08 -2.84 5.24 29.74 0.16 -2.68 16 20 C 0.14 5.66 6.52 86.17 0.56 6.22 16 21 N -0.61 -30.90 2.97 -704.21 -2.09 -32.99 16 22 C -0.26 -14.08 9.69 84.04 0.81 -13.27 16 23 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 24 C -0.05 -2.95 4.99 84.86 0.42 -2.53 16 25 N -0.94 -55.29 11.10 21.65 0.24 -55.04 16 26 Si 0.97 44.58 29.58 68.60 2.03 46.61 16 27 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 29 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 30 C 0.22 10.93 4.86 85.64 0.42 11.34 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.41 8.45 8.46 -92.71 -0.78 7.67 16 39 H 0.07 1.82 6.34 -2.38 -0.02 1.81 16 40 H 0.08 1.80 7.98 -2.39 -0.02 1.78 16 41 H 0.15 2.58 8.02 -2.91 -0.02 2.55 16 42 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 43 H 0.12 3.85 8.05 -2.91 -0.02 3.82 16 44 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.08 2.45 6.26 -2.39 -0.01 2.43 16 46 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.06 2.54 7.96 -2.39 -0.02 2.52 16 48 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 49 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 50 H 0.06 3.40 6.34 -2.39 -0.02 3.39 16 Total: -1.00 -68.50 407.30 1.56 -66.94 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.16 Total: 25.35 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 5.43 Total: -6.04 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -4.43 Total: -106.37 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -1.63 Total: -26.50 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -68.50 1.56 -66.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051279543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.571 kcal (2) G-P(sol) polarization free energy of solvation -68.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds