Wall clock time and date at job start Wed Apr 1 2020 02:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46739 * 2 1 4 4 C 1.35912 * 116.99650 * 180.02562 * 3 2 1 5 5 C 1.38494 * 119.98445 * 359.97438 * 4 3 2 6 6 C 1.39488 * 119.79011 * 180.02562 * 5 4 3 7 7 C 1.47859 * 120.11431 * 180.02562 * 6 5 4 8 8 O 1.21552 * 120.00147 * 7.88482 * 7 6 5 9 9 N 1.34775 * 119.99901 * 187.61130 * 7 6 5 10 10 C 1.47387 * 135.85496 * 356.73989 * 9 7 6 11 11 C 1.52071 * 87.41429 * 154.39200 * 10 9 7 12 12 C 1.47402 * 135.85354 * 177.11428 * 9 7 6 13 13 C 1.53516 * 117.21325 * 267.28166 * 11 10 9 14 14 C 1.54633 * 102.70531 * 262.93038 * 13 11 10 15 15 N 1.47151 * 107.37281 * 339.38548 * 14 13 11 16 16 C 1.36938 * 125.57560 * 179.07007 * 15 14 13 17 17 H 1.08002 * 119.99298 * 185.07636 * 16 15 14 18 18 C 1.38810 * 120.00260 * 5.07801 * 16 15 14 19 19 N 1.31623 * 119.99879 * 354.90306 * 18 16 15 20 20 Si 1.86793 * 120.00005 * 174.90436 * 18 16 15 21 21 H 1.48503 * 109.47231 * 94.99932 * 20 18 16 22 22 H 1.48501 * 109.47116 * 214.99569 * 20 18 16 23 23 H 1.48503 * 109.47287 * 334.99741 * 20 18 16 24 24 C 1.47755 * 108.83937 * 359.08599 * 15 14 13 25 25 C 1.39596 * 119.76848 * 0.27956 * 6 5 4 26 26 C 1.37973 * 119.96403 * 359.44408 * 25 6 5 27 27 C 1.38292 * 120.20161 * 0.55887 * 26 25 6 28 28 C 1.50702 * 119.87656 * 179.69832 * 27 26 25 29 29 H 1.09000 * 109.46823 * 60.00493 * 1 2 3 30 30 H 1.09000 * 109.46812 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47648 * 300.00243 * 1 2 3 32 32 H 1.08997 * 109.47140 * 239.99717 * 2 1 3 33 33 H 1.09000 * 109.46823 * 119.99507 * 2 1 3 34 34 H 1.08005 * 120.10396 * 0.02562 * 5 4 3 35 35 H 1.09002 * 113.54629 * 269.00410 * 10 9 7 36 36 H 1.08999 * 113.54149 * 39.67961 * 10 9 7 37 37 H 1.08995 * 113.54271 * 320.32173 * 12 9 7 38 38 H 1.08999 * 113.54241 * 90.92952 * 12 9 7 39 39 H 1.09001 * 110.76194 * 21.23262 * 13 11 10 40 40 H 1.09002 * 110.76506 * 144.62355 * 13 11 10 41 41 H 1.09001 * 109.86597 * 98.83158 * 14 13 11 42 42 H 1.08998 * 109.86429 * 219.93737 * 14 13 11 43 43 H 0.97001 * 119.99981 * 180.02562 * 19 18 16 44 44 H 1.09005 * 110.40648 * 263.50460 * 24 15 14 45 45 H 1.08997 * 110.40144 * 141.08749 * 24 15 14 46 46 H 1.07993 * 120.02262 * 179.72755 * 25 6 5 47 47 H 1.07995 * 119.89809 * 180.25346 * 26 25 6 48 48 H 1.08996 * 109.47451 * 270.01887 * 28 27 26 49 49 H 1.09000 * 109.47446 * 30.02004 * 28 27 26 50 50 H 1.09000 * 109.46997 * 150.01959 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.1971 0.4269 -0.0005 6 6 5.5793 0.6143 -0.0005 7 6 6.4863 -0.5534 -0.0011 8 8 6.0357 -1.6729 -0.1459 9 7 7.8133 -0.3759 0.1535 10 6 8.7175 0.7806 0.2852 11 6 9.6725 -0.1385 1.0308 12 6 8.9928 -1.2539 0.2577 13 6 9.5562 -0.1797 2.5610 14 6 10.6606 0.8038 3.0127 15 7 11.6135 0.9360 1.8992 16 6 12.7275 1.7323 1.8943 17 1 13.3217 1.8240 0.9971 18 6 13.0932 2.4215 3.0424 19 7 12.3161 2.3902 4.1043 20 14 14.6879 3.3934 3.0803 21 1 14.4106 4.8129 2.7435 22 1 15.2836 3.3142 4.4383 23 1 15.6372 2.8258 2.0894 24 6 11.1713 0.0692 0.7873 25 6 6.1033 1.9082 0.0053 26 6 5.2540 2.9956 -0.0005 27 6 3.8839 2.8083 -0.0004 28 6 2.9630 4.0012 0.0001 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7858 -0.5718 -0.0005 35 1 9.1104 1.1368 -0.6670 36 1 8.3117 1.5824 0.9021 37 1 8.8168 -2.1507 0.8515 38 1 9.4621 -1.4684 -0.7024 39 1 8.5744 0.1671 2.8833 40 1 9.7552 -1.1834 2.9367 41 1 10.2210 1.7748 3.2412 42 1 11.1704 0.4099 3.8918 43 1 12.5714 2.8721 4.9065 44 1 11.6970 -0.8852 0.8172 45 1 11.3359 0.5648 -0.1694 46 1 7.1727 2.0581 0.0098 47 1 5.6606 3.9961 0.0000 48 1 2.7413 4.2887 1.0278 49 1 3.4453 4.8328 -0.5138 50 1 2.0364 3.7451 -0.5135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073030090.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:06 Heat of formation + Delta-G solvation = 25.675471 kcal Electronic energy + Delta-G solvation = -30154.520469 eV Core-core repulsion = 26149.524451 eV Total energy + Delta-G solvation = -4004.996019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.02790 -40.26556 -38.46213 -37.39000 -35.71865 -33.26151 -32.21693 -31.91905 -30.16055 -29.59046 -28.84425 -27.35667 -26.19453 -25.59983 -24.33119 -23.70218 -22.28053 -21.61202 -20.35090 -19.94684 -18.54293 -18.11798 -16.85043 -16.56993 -16.41088 -16.15003 -15.97782 -15.50258 -15.18615 -14.79357 -14.38627 -14.18173 -14.01997 -13.81625 -13.78571 -13.55866 -13.02455 -12.99769 -12.90146 -12.63643 -12.38501 -12.33834 -12.09764 -12.00349 -11.88194 -11.84400 -11.56541 -11.22163 -11.00446 -10.97559 -10.95980 -10.63173 -10.46826 -10.24411 -10.13271 -9.88755 -9.69262 -9.59529 -9.05028 -8.62155 -8.58938 -8.33134 -6.87080 -5.75428 -3.08663 0.70398 1.23403 2.77999 2.83292 2.95153 3.37631 3.43661 3.45478 3.72075 4.27652 4.44521 4.55755 4.57976 4.61324 4.70004 4.75933 4.91914 4.92671 4.95869 5.01153 5.18756 5.23766 5.37921 5.40688 5.44681 5.45060 5.47185 5.51554 5.57481 5.60398 5.63893 5.68590 5.72701 5.77134 5.80015 5.95401 6.07936 6.14703 6.19981 6.21234 6.26824 6.42586 6.48762 6.53920 6.62683 6.67606 7.14718 7.51383 7.59234 7.76533 7.79130 8.17416 8.21354 9.17797 9.78013 10.43728 11.36351 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.002426 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.266289 B =11539.013975 C =12571.889671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.312 6.312 4 C 0.117 3.883 5 C -0.149 4.149 6 C -0.093 4.093 7 C 0.584 3.416 8 O -0.548 6.548 9 N -0.635 5.635 10 C 0.110 3.890 11 C -0.105 4.105 12 C 0.121 3.879 13 C -0.118 4.118 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.229 4.229 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.154 3.846 25 C -0.129 4.129 26 C -0.091 4.091 27 C -0.095 4.095 28 C -0.107 4.107 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.139 0.861 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.252 0.748 44 H 0.028 0.972 45 H 0.043 0.957 46 H 0.146 0.854 47 H 0.137 0.863 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.833 -1.574 -8.990 21.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.227 6.227 4 C 0.072 3.928 5 C -0.169 4.169 6 C -0.096 4.096 7 C 0.375 3.625 8 O -0.427 6.427 9 N -0.369 5.369 10 C -0.012 4.012 11 C -0.106 4.106 12 C -0.002 4.002 13 C -0.156 4.156 14 C 0.055 3.945 15 N -0.331 5.331 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.567 5.567 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.027 3.973 25 C -0.147 4.147 26 C -0.109 4.109 27 C -0.096 4.096 28 C -0.164 4.164 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.157 0.843 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.163 0.837 47 H 0.154 0.846 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.347 -1.929 -8.931 22.304 hybrid contribution 0.970 0.271 0.091 1.011 sum -19.377 -1.657 -8.840 21.363 Atomic orbital electron populations 1.21763 0.92627 1.02912 1.03413 1.22828 0.95878 0.81906 1.01817 1.86049 1.18483 1.29285 1.88844 1.18599 0.82471 0.93229 0.98508 1.21265 0.92652 0.98794 1.04142 1.19619 0.92974 0.93232 1.03806 1.17753 0.80135 0.88380 0.76183 1.90740 1.75528 1.25420 1.51059 1.49647 1.03853 1.12293 1.71125 1.23142 0.87035 0.90827 1.00170 1.22206 0.96676 0.94834 0.96929 1.22804 0.81951 0.95549 0.99885 1.22479 1.00492 1.01140 0.91476 1.21233 0.87256 0.95421 0.90628 1.44540 1.27214 1.49208 1.12151 1.19036 1.00246 1.19603 0.96810 0.90388 1.24814 0.98776 1.00749 0.96012 1.69968 1.36894 1.46344 1.03534 0.86130 0.83160 0.79683 0.76956 1.21695 1.21692 1.20639 1.21136 0.88932 0.94588 0.92659 1.21962 1.01693 0.91365 0.99728 1.20908 0.91482 0.99414 0.99085 1.19479 0.94439 0.92600 1.03049 1.20660 0.98545 0.94610 1.02560 0.91569 0.90325 0.91516 0.91860 0.91824 0.84327 0.89061 0.89199 0.90300 0.89594 0.92067 0.91710 0.93830 0.93458 0.93736 0.95458 0.93924 0.83681 0.84560 0.91052 0.91390 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.05 0.44 5.46 37.16 0.20 0.64 16 3 O -0.31 -3.44 9.16 -19.46 -0.18 -3.62 16 4 C 0.12 1.43 6.65 -39.28 -0.26 1.17 16 5 C -0.15 -1.99 8.58 -39.02 -0.33 -2.32 16 6 C -0.09 -1.34 5.87 -104.99 -0.62 -1.95 16 7 C 0.58 9.52 8.00 -12.32 -0.10 9.42 16 8 O -0.55 -10.39 17.15 5.32 0.09 -10.30 16 9 N -0.64 -9.49 3.69 -186.83 -0.69 -10.17 16 10 C 0.11 1.55 5.82 -7.33 -0.04 1.51 16 11 C -0.10 -1.66 1.06 -155.22 -0.16 -1.82 16 12 C 0.12 1.70 8.03 -7.47 -0.06 1.64 16 13 C -0.12 -2.09 6.40 -25.61 -0.16 -2.26 16 14 C 0.18 4.11 5.40 -2.83 -0.02 4.10 16 15 N -0.60 -14.41 3.41 -170.53 -0.58 -14.99 16 16 C -0.23 -6.06 10.27 -15.06 -0.15 -6.21 16 17 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 18 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 19 N -0.92 -26.19 10.33 55.49 0.57 -25.62 16 20 Si 0.91 21.44 29.56 -169.99 -5.02 16.42 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.15 2.85 6.70 -3.22 -0.02 2.83 16 25 C -0.13 -1.63 9.20 -39.17 -0.36 -1.99 16 26 C -0.09 -1.01 9.68 -39.66 -0.38 -1.39 16 27 C -0.09 -1.06 5.90 -104.39 -0.62 -1.68 16 28 C -0.11 -0.93 9.78 36.01 0.35 -0.58 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 33 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 34 H 0.14 1.81 5.91 -52.48 -0.31 1.50 16 35 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 36 H 0.09 1.27 6.19 -51.93 -0.32 0.95 16 37 H 0.08 1.12 8.13 -51.93 -0.42 0.70 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.04 1.10 7.53 -51.93 -0.39 0.71 16 42 H 0.05 1.23 7.36 -51.93 -0.38 0.84 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 46 H 0.15 1.74 3.81 -52.49 -0.20 1.54 16 47 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 50 H 0.07 0.62 7.52 -51.93 -0.39 0.23 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -31.98 398.38 -10.07 -42.05 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.81 Total: -0.04 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -2.45 Total: 0.27 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.70 Total: -50.78 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.09 Total: -13.91 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.98 -10.07 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073030090.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.725 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds