Wall clock time and date at job start Wed Apr 1 2020 02:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46739 * 2 1 4 4 C 1.35912 * 116.99650 * 180.02562 * 3 2 1 5 5 C 1.38494 * 119.98445 * 359.97438 * 4 3 2 6 6 C 1.39488 * 119.79011 * 180.02562 * 5 4 3 7 7 C 1.47859 * 120.11431 * 180.02562 * 6 5 4 8 8 O 1.21552 * 120.00147 * 7.88482 * 7 6 5 9 9 N 1.34775 * 119.99901 * 187.61130 * 7 6 5 10 10 C 1.47387 * 135.85496 * 356.73989 * 9 7 6 11 11 C 1.52071 * 87.41429 * 154.39200 * 10 9 7 12 12 C 1.47402 * 135.85354 * 177.11428 * 9 7 6 13 13 C 1.53516 * 117.21325 * 267.28166 * 11 10 9 14 14 C 1.54633 * 102.70531 * 262.93038 * 13 11 10 15 15 N 1.47151 * 107.37281 * 339.38548 * 14 13 11 16 16 C 1.36938 * 125.57560 * 179.07007 * 15 14 13 17 17 H 1.08002 * 119.99298 * 185.07636 * 16 15 14 18 18 C 1.38810 * 120.00260 * 5.07801 * 16 15 14 19 19 N 1.31623 * 119.99879 * 354.90306 * 18 16 15 20 20 Si 1.86793 * 120.00005 * 174.90436 * 18 16 15 21 21 H 1.48503 * 109.47231 * 94.99932 * 20 18 16 22 22 H 1.48501 * 109.47116 * 214.99569 * 20 18 16 23 23 H 1.48503 * 109.47287 * 334.99741 * 20 18 16 24 24 C 1.47755 * 108.83937 * 359.08599 * 15 14 13 25 25 C 1.39596 * 119.76848 * 0.27956 * 6 5 4 26 26 C 1.37973 * 119.96403 * 359.44408 * 25 6 5 27 27 C 1.38292 * 120.20161 * 0.55887 * 26 25 6 28 28 C 1.50702 * 119.87656 * 179.69832 * 27 26 25 29 29 H 1.09000 * 109.46823 * 60.00493 * 1 2 3 30 30 H 1.09000 * 109.46812 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47648 * 300.00243 * 1 2 3 32 32 H 1.08997 * 109.47140 * 239.99717 * 2 1 3 33 33 H 1.09000 * 109.46823 * 119.99507 * 2 1 3 34 34 H 1.08005 * 120.10396 * 0.02562 * 5 4 3 35 35 H 1.09002 * 113.54629 * 269.00410 * 10 9 7 36 36 H 1.08999 * 113.54149 * 39.67961 * 10 9 7 37 37 H 1.08995 * 113.54271 * 320.32173 * 12 9 7 38 38 H 1.08999 * 113.54241 * 90.92952 * 12 9 7 39 39 H 1.09001 * 110.76194 * 21.23262 * 13 11 10 40 40 H 1.09002 * 110.76506 * 144.62355 * 13 11 10 41 41 H 1.09001 * 109.86597 * 98.83158 * 14 13 11 42 42 H 1.08998 * 109.86429 * 219.93737 * 14 13 11 43 43 H 0.97001 * 119.99981 * 180.02562 * 19 18 16 44 44 H 1.09005 * 110.40648 * 263.50460 * 24 15 14 45 45 H 1.08997 * 110.40144 * 141.08749 * 24 15 14 46 46 H 1.07993 * 120.02262 * 179.72755 * 25 6 5 47 47 H 1.07995 * 119.89809 * 180.25346 * 26 25 6 48 48 H 1.08996 * 109.47451 * 270.01887 * 28 27 26 49 49 H 1.09000 * 109.47446 * 30.02004 * 28 27 26 50 50 H 1.09000 * 109.46997 * 150.01959 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.1971 0.4269 -0.0005 6 6 5.5793 0.6143 -0.0005 7 6 6.4863 -0.5534 -0.0011 8 8 6.0357 -1.6729 -0.1459 9 7 7.8133 -0.3759 0.1535 10 6 8.7175 0.7806 0.2852 11 6 9.6725 -0.1385 1.0308 12 6 8.9928 -1.2539 0.2577 13 6 9.5562 -0.1797 2.5610 14 6 10.6606 0.8038 3.0127 15 7 11.6135 0.9360 1.8992 16 6 12.7275 1.7323 1.8943 17 1 13.3217 1.8240 0.9971 18 6 13.0932 2.4215 3.0424 19 7 12.3161 2.3902 4.1043 20 14 14.6879 3.3934 3.0803 21 1 14.4106 4.8129 2.7435 22 1 15.2836 3.3142 4.4383 23 1 15.6372 2.8258 2.0894 24 6 11.1713 0.0692 0.7873 25 6 6.1033 1.9082 0.0053 26 6 5.2540 2.9956 -0.0005 27 6 3.8839 2.8083 -0.0004 28 6 2.9630 4.0012 0.0001 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7858 -0.5718 -0.0005 35 1 9.1104 1.1368 -0.6670 36 1 8.3117 1.5824 0.9021 37 1 8.8168 -2.1507 0.8515 38 1 9.4621 -1.4684 -0.7024 39 1 8.5744 0.1671 2.8833 40 1 9.7552 -1.1834 2.9367 41 1 10.2210 1.7748 3.2412 42 1 11.1704 0.4099 3.8918 43 1 12.5714 2.8721 4.9065 44 1 11.6970 -0.8852 0.8172 45 1 11.3359 0.5648 -0.1694 46 1 7.1727 2.0581 0.0098 47 1 5.6606 3.9961 0.0000 48 1 2.7413 4.2887 1.0278 49 1 3.4453 4.8328 -0.5138 50 1 2.0364 3.7451 -0.5135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073030090.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:05 Heat of formation + Delta-G solvation = 7.839330 kcal Electronic energy + Delta-G solvation = -30155.293902 eV Core-core repulsion = 26149.524451 eV Total energy + Delta-G solvation = -4005.769452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.20169 -41.24373 -39.67866 -38.34639 -37.34139 -34.28890 -33.91617 -32.60098 -31.42483 -30.83761 -30.32073 -28.45110 -27.42787 -26.99585 -25.52516 -24.91872 -23.24856 -22.44878 -22.11562 -21.05828 -19.89885 -19.13499 -18.64162 -17.70414 -17.20556 -17.18452 -17.02451 -16.78975 -16.60582 -16.16086 -15.87406 -15.58467 -15.13625 -14.87843 -14.70303 -14.52818 -14.25540 -14.08819 -13.75076 -13.73094 -13.62653 -13.44900 -13.33641 -13.16494 -12.92398 -12.84200 -12.73925 -12.70456 -12.47272 -12.11312 -12.10151 -12.00650 -11.89429 -11.81947 -11.72858 -11.64454 -11.19272 -10.90759 -10.63687 -10.03389 -9.74663 -9.23964 -8.82649 -7.80094 -5.13961 -0.29190 0.31104 1.50582 1.51848 1.60649 1.65337 1.71206 2.16105 2.54002 2.71817 3.15654 3.31601 3.43129 3.57666 3.70100 3.78629 3.87060 3.98918 3.99266 4.06171 4.08947 4.16733 4.22277 4.32106 4.36994 4.45705 4.48385 4.54792 4.62814 4.66986 4.71224 4.76240 4.83048 4.85885 4.86068 4.91323 4.92335 5.03077 5.13739 5.16880 5.19992 5.22849 5.22979 5.28582 5.40273 5.53376 5.68246 5.69939 5.81776 6.24483 6.29622 6.56435 6.96359 7.15552 7.83156 8.47709 9.30729 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.002426 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.266289 B =11539.013975 C =12571.889671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 O -0.317 6.317 4 C 0.110 3.890 5 C -0.160 4.160 6 C -0.115 4.115 7 C 0.581 3.419 8 O -0.584 6.584 9 N -0.635 5.635 10 C 0.116 3.884 11 C -0.098 4.098 12 C 0.126 3.874 13 C -0.104 4.104 14 C 0.191 3.809 15 N -0.624 5.624 16 C -0.233 4.233 17 H 0.088 0.912 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.973 3.027 21 H -0.288 1.288 22 H -0.300 1.300 23 H -0.268 1.268 24 C 0.152 3.848 25 C -0.131 4.131 26 C -0.090 4.090 27 C -0.095 4.095 28 C -0.105 4.105 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.011 0.989 42 H 0.007 0.993 43 H 0.244 0.756 44 H 0.035 0.965 45 H 0.060 0.940 46 H 0.151 0.849 47 H 0.164 0.836 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.431 -0.841 -10.812 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.231 6.231 4 C 0.065 3.935 5 C -0.179 4.179 6 C -0.118 4.118 7 C 0.374 3.626 8 O -0.466 6.466 9 N -0.367 5.367 10 C -0.006 4.006 11 C -0.100 4.100 12 C 0.004 3.996 13 C -0.142 4.142 14 C 0.065 3.935 15 N -0.351 5.351 16 C -0.362 4.362 17 H 0.105 0.895 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.802 3.198 21 H -0.215 1.215 22 H -0.227 1.227 23 H -0.192 1.192 24 C 0.027 3.973 25 C -0.150 4.150 26 C -0.107 4.107 27 C -0.096 4.096 28 C -0.162 4.162 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.029 0.971 42 H 0.025 0.975 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.168 0.832 47 H 0.181 0.819 48 H 0.097 0.903 49 H 0.106 0.894 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.939 -1.207 -10.792 23.587 hybrid contribution 1.117 0.031 0.642 1.289 sum -19.821 -1.177 -10.151 22.301 Atomic orbital electron populations 1.21779 0.90623 1.04170 1.03583 1.23045 0.97447 0.80969 1.01691 1.86052 1.17806 1.30611 1.88659 1.18768 0.82904 0.93419 0.98427 1.21290 0.92697 0.99100 1.04857 1.19592 0.93014 0.93263 1.05917 1.18067 0.80525 0.88470 0.75582 1.90709 1.76123 1.26817 1.52979 1.49631 1.03765 1.12849 1.70504 1.23234 0.86007 0.90316 1.01026 1.22004 0.95412 0.97029 0.95537 1.22862 0.81261 0.94706 1.00767 1.22270 0.98686 0.99981 0.93253 1.20907 0.88076 0.94789 0.89681 1.44814 1.26865 1.49562 1.13843 1.19454 1.00825 1.18985 0.96896 0.89468 1.25609 1.01794 1.02596 0.96047 1.70187 1.38431 1.47614 1.03886 0.85135 0.79837 0.78335 0.76475 1.21478 1.22725 1.19227 1.21299 0.90380 0.93964 0.91637 1.22057 1.02204 0.91086 0.99610 1.21230 0.91300 1.00206 0.98002 1.19879 0.95085 0.93091 1.01574 1.20718 0.98115 0.94057 1.03269 0.91261 0.88536 0.91422 0.91902 0.92120 0.84911 0.86619 0.89237 0.90294 0.86996 0.91396 0.90898 0.97098 0.97501 0.94626 0.94739 0.92134 0.83167 0.81876 0.90327 0.89446 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.04 0.73 5.46 71.98 0.39 1.12 16 3 O -0.32 -6.74 9.16 -92.56 -0.85 -7.59 16 4 C 0.11 2.61 6.65 22.47 0.15 2.76 16 5 C -0.16 -4.27 8.58 22.63 0.19 -4.08 16 6 C -0.11 -3.23 5.87 -20.10 -0.12 -3.35 16 7 C 0.58 18.61 8.00 86.79 0.69 19.31 16 8 O -0.58 -22.21 17.15 -3.88 -0.07 -22.27 16 9 N -0.63 -17.87 3.69 -863.27 -3.19 -21.06 16 10 C 0.12 2.99 5.82 83.76 0.49 3.48 16 11 C -0.10 -2.92 1.06 -52.62 -0.06 -2.97 16 12 C 0.13 3.25 8.03 83.67 0.67 3.92 16 13 C -0.10 -3.64 6.40 31.32 0.20 -3.44 16 14 C 0.19 8.96 5.40 86.81 0.47 9.43 16 15 N -0.62 -29.61 3.41 -693.45 -2.36 -31.97 16 16 C -0.23 -12.24 10.27 84.03 0.86 -11.38 16 17 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 18 C -0.07 -3.72 5.48 84.86 0.47 -3.25 16 19 N -0.95 -55.89 10.33 21.65 0.22 -55.67 16 20 Si 0.97 44.35 29.56 68.60 2.03 46.38 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 C 0.15 5.35 6.70 86.22 0.58 5.93 16 25 C -0.13 -3.11 9.20 22.53 0.21 -2.91 16 26 C -0.09 -1.79 9.68 22.22 0.21 -1.57 16 27 C -0.10 -1.97 5.90 -19.72 -0.12 -2.08 16 28 C -0.11 -1.57 9.78 71.24 0.70 -0.87 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 1.05 7.66 -2.39 -0.02 1.03 16 33 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 34 H 0.13 3.58 5.91 -2.91 -0.02 3.57 16 35 H 0.12 2.49 8.06 -2.39 -0.02 2.48 16 36 H 0.09 2.37 6.19 -2.39 -0.01 2.36 16 37 H 0.08 2.08 8.13 -2.39 -0.02 2.06 16 38 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.07 2.29 8.07 -2.39 -0.02 2.28 16 40 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.01 0.57 7.53 -2.39 -0.02 0.55 16 42 H 0.01 0.37 7.36 -2.39 -0.02 0.35 16 43 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 44 H 0.03 1.19 8.14 -2.38 -0.02 1.18 16 45 H 0.06 1.93 8.00 -2.39 -0.02 1.91 16 46 H 0.15 3.31 3.81 -2.91 -0.01 3.30 16 47 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 48 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 50 H 0.07 1.07 7.52 -2.39 -0.02 1.06 16 Total: -1.00 -70.77 398.38 3.46 -67.31 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.94 Total: 15.71 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 6.74 Total: 9.17 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -5.33 Total: -108.70 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.91 Total: -29.86 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.77 3.46 -67.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073030090.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.146 kcal (2) G-P(sol) polarization free energy of solvation -70.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds