Wall clock time and date at job start Wed Apr 1 2020 02:54:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 O 1.42893 * 109.47230 * 2 1
4 4 C 1.35904 * 117.00216 * 179.97438 * 3 2 1
5 5 C 1.38751 * 120.05412 * 0.02562 * 4 3 2
6 6 C 1.38121 * 119.94641 * 180.02562 * 5 4 3
7 7 C 1.38291 * 120.05218 * 0.02562 * 6 5 4
8 8 C 1.38241 * 120.11180 * 0.25948 * 7 6 5
9 9 C 1.50696 * 119.97243 * 179.70308 * 8 7 6
10 10 C 1.50697 * 109.47685 * 89.99465 * 9 8 7
11 11 O 1.21286 * 119.99713 * 359.97438 * 10 9 8
12 12 N 1.34778 * 120.00602 * 180.02562 * 10 9 8
13 13 C 1.47390 * 135.84901 * 359.62478 * 12 10 9
14 14 C 1.52078 * 87.40803 * 154.39278 * 13 12 10
15 15 C 1.47385 * 135.85466 * 179.97438 * 12 10 9
16 16 C 1.53514 * 117.21235 * 267.27974 * 14 13 12
17 17 C 1.54630 * 102.70118 * 262.93324 * 16 14 13
18 18 N 1.47146 * 107.37717 * 339.38259 * 17 16 14
19 19 C 1.36939 * 125.57559 * 179.11072 * 18 17 16
20 20 H 1.08002 * 119.99586 * 179.97438 * 19 18 17
21 21 C 1.38805 * 120.00289 * 359.97438 * 19 18 17
22 22 N 1.31623 * 120.00237 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 120.00024 * 179.97438 * 21 19 18
24 24 H 1.48501 * 109.47070 * 0.02562 * 23 21 19
25 25 H 1.48504 * 109.47167 * 120.00185 * 23 21 19
26 26 H 1.48500 * 109.47503 * 240.00020 * 23 21 19
27 27 C 1.47748 * 108.84032 * 359.09073 * 18 17 16
28 28 C 1.38173 * 120.05599 * 359.44059 * 8 7 6
29 29 H 1.08998 * 109.47433 * 299.99962 * 1 2 3
30 30 H 1.08994 * 109.47228 * 60.00322 * 1 2 3
31 31 H 1.09008 * 109.47411 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46914 * 239.99492 * 2 1 3
33 33 H 1.09007 * 109.47065 * 119.99884 * 2 1 3
34 34 H 1.08007 * 120.02525 * 0.04297 * 5 4 3
35 35 H 1.07998 * 119.97579 * 180.02562 * 6 5 4
36 36 H 1.08002 * 119.93997 * 179.97438 * 7 6 5
37 37 H 1.09003 * 109.47405 * 209.99619 * 9 8 7
38 38 H 1.09005 * 109.46844 * 329.99294 * 9 8 7
39 39 H 1.08991 * 113.54334 * 269.00268 * 13 12 10
40 40 H 1.09006 * 113.54155 * 39.68514 * 13 12 10
41 41 H 1.08997 * 113.54733 * 320.32118 * 15 12 10
42 42 H 1.09007 * 113.54479 * 90.93251 * 15 12 10
43 43 H 1.09002 * 110.76299 * 21.23591 * 16 14 13
44 44 H 1.08995 * 110.76544 * 144.62877 * 16 14 13
45 45 H 1.08993 * 109.86701 * 98.83598 * 17 16 14
46 46 H 1.08999 * 109.86137 * 219.93291 * 17 16 14
47 47 H 0.96994 * 119.99775 * 180.02562 * 22 21 19
48 48 H 1.09003 * 110.40728 * 263.50354 * 27 18 17
49 49 H 1.09000 * 110.40449 * 141.07638 * 27 18 17
50 50 H 1.08001 * 120.02637 * 180.25972 * 28 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3472 0.0000
4 6 3.3536 1.5253 0.0005
5 6 4.1999 0.4257 0.0005
6 6 5.5689 0.6093 0.0016
7 6 6.0962 1.8878 0.0032
8 6 5.2551 2.9849 0.0092
9 6 5.8331 4.3765 0.0178
10 6 6.0268 4.8489 -1.4001
11 8 5.7256 4.1263 -2.3265
12 7 6.5357 6.0738 -1.6389
13 6 7.0003 7.2048 -0.8159
14 6 7.8830 7.6054 -1.9877
15 6 6.8640 6.8677 -2.8365
16 6 9.3205 7.0668 -2.0000
17 6 10.1292 8.2427 -1.4048
18 7 9.3177 9.4597 -1.5648
19 6 9.6736 10.7150 -1.1490
20 1 9.0060 11.5478 -1.3136
21 6 10.8923 10.9169 -0.5159
22 7 11.7061 9.9020 -0.3157
23 14 11.3780 12.6294 0.0506
24 1 10.2972 13.5888 -0.2908
25 1 11.5877 12.6235 1.5208
26 1 12.6348 13.0372 -0.6270
27 6 8.0564 9.1057 -2.2480
28 6 3.8850 2.8065 0.0019
29 1 -0.3634 0.5138 0.8900
30 1 -0.3633 0.5137 -0.8900
31 1 -0.3634 -1.0277 0.0005
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8901
34 1 3.7885 -0.5729 -0.0006
35 1 6.2280 -0.2462 0.0012
36 1 7.1669 2.0292 0.0045
37 1 5.1503 5.0505 0.5351
38 1 6.7941 4.3677 0.5322
39 1 6.2184 7.9304 -0.5918
40 1 7.5599 6.8990 0.0682
41 1 7.3096 6.2805 -3.6394
42 1 6.0434 7.4979 -3.1796
43 1 9.4067 6.1809 -1.3708
44 1 9.6439 6.8517 -3.0184
45 1 10.3217 8.0622 -0.3473
46 1 11.0718 8.3529 -1.9411
47 1 12.5575 10.0432 0.1270
48 1 8.1363 9.2990 -3.3177
49 1 7.2233 9.6642 -1.8212
50 1 3.2284 3.6640 0.0023
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001073465983.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:54:11
Heat of formation + Delta-G solvation = -1.040283 kcal
Electronic energy + Delta-G solvation = -29325.779266 eV
Core-core repulsion = 25319.624765 eV
Total energy + Delta-G solvation = -4006.154501 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.92799 -41.14404 -39.76983 -38.40523 -37.25005 -34.10658 -33.67073 -32.90137
-31.34014 -30.61972 -30.31484 -28.67551 -27.18863 -26.97116 -25.38581 -24.45928
-23.53149 -22.13489 -21.97432 -20.53999 -19.65296 -18.82967 -18.55751 -17.94013
-17.18172 -17.08048 -17.04284 -16.97015 -16.61969 -16.52133 -15.87571 -15.59058
-15.33969 -14.90581 -14.43003 -14.36595 -14.24988 -14.08553 -13.99089 -13.72718
-13.62638 -13.41135 -13.26342 -12.94934 -12.86582 -12.81771 -12.76939 -12.59804
-12.44778 -12.23109 -11.95764 -11.89830 -11.78661 -11.73229 -11.67104 -11.63035
-11.19416 -10.87180 -10.65986 -9.82113 -9.70015 -9.15739 -8.82886 -7.79709
-5.14065 0.28903 0.48827 1.50229 1.50843 1.60390 1.60737 1.83571
2.24927 2.53755 2.77609 3.28867 3.41880 3.57364 3.62854 3.70719
3.83954 3.86052 4.04453 4.07300 4.10273 4.12472 4.22821 4.25302
4.34952 4.37114 4.46271 4.48297 4.57655 4.61461 4.64520 4.69455
4.74086 4.78908 4.87168 4.89299 4.92688 4.97630 5.06012 5.08548
5.18951 5.20385 5.22908 5.32932 5.45396 5.53128 5.60441 5.71211
5.80690 5.83241 6.24839 6.46759 6.73339 7.12062 7.16063 7.83393
8.47525 9.30920
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.025638 B = 0.001828 C = 0.001810
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1091.850293 B =15317.376318 C =15464.264136
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.045 3.955
3 O -0.336 6.336
4 C 0.115 3.885
5 C -0.213 4.213
6 C -0.082 4.082
7 C -0.157 4.157
8 C -0.036 4.036
9 C -0.092 4.092
10 C 0.542 3.458
11 O -0.582 6.582
12 N -0.644 5.644
13 C 0.126 3.874
14 C -0.100 4.100
15 C 0.124 3.876
16 C -0.102 4.102
17 C 0.190 3.810
18 N -0.625 5.625
19 C -0.233 4.233
20 H 0.086 0.914
21 C -0.068 4.068
22 N -0.952 5.952
23 Si 0.974 3.026
24 H -0.264 1.264
25 H -0.294 1.294
26 H -0.298 1.298
27 C 0.151 3.849
28 C -0.158 4.158
29 H 0.063 0.937
30 H 0.059 0.941
31 H 0.101 0.899
32 H 0.067 0.933
33 H 0.074 0.926
34 H 0.149 0.851
35 H 0.150 0.850
36 H 0.132 0.868
37 H 0.123 0.877
38 H 0.123 0.877
39 H 0.108 0.892
40 H 0.085 0.915
41 H 0.073 0.927
42 H 0.105 0.895
43 H 0.073 0.927
44 H 0.069 0.931
45 H 0.015 0.985
46 H 0.002 0.998
47 H 0.244 0.756
48 H 0.031 0.969
49 H 0.058 0.942
50 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.848 -19.616 2.443 27.313
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.030 4.030
3 O -0.251 6.251
4 C 0.070 3.930
5 C -0.231 4.231
6 C -0.100 4.100
7 C -0.175 4.175
8 C -0.037 4.037
9 C -0.131 4.131
10 C 0.333 3.667
11 O -0.462 6.462
12 N -0.378 5.378
13 C 0.004 3.996
14 C -0.102 4.102
15 C 0.001 3.999
16 C -0.140 4.140
17 C 0.065 3.935
18 N -0.351 5.351
19 C -0.362 4.362
20 H 0.104 0.896
21 C -0.260 4.260
22 N -0.602 5.602
23 Si 0.803 3.197
24 H -0.188 1.188
25 H -0.222 1.222
26 H -0.225 1.225
27 C 0.026 3.974
28 C -0.177 4.177
29 H 0.082 0.918
30 H 0.078 0.922
31 H 0.120 0.880
32 H 0.086 0.914
33 H 0.092 0.908
34 H 0.166 0.834
35 H 0.168 0.832
36 H 0.150 0.850
37 H 0.141 0.859
38 H 0.141 0.859
39 H 0.126 0.874
40 H 0.103 0.897
41 H 0.092 0.908
42 H 0.123 0.877
43 H 0.092 0.908
44 H 0.088 0.912
45 H 0.033 0.967
46 H 0.021 0.979
47 H 0.054 0.946
48 H 0.049 0.951
49 H 0.076 0.924
50 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -19.122 -19.971 2.096 27.729
hybrid contribution 0.937 0.874 0.184 1.294
sum -18.185 -19.097 2.281 26.469
Atomic orbital electron populations
1.21811 0.91548 1.04221 1.03084 1.23064 0.96874 0.80752 1.02264
1.86047 1.18860 1.31441 1.88764 1.19071 0.82777 0.94341 0.96817
1.21493 0.94468 0.98553 1.08623 1.21229 0.94740 0.97621 0.96406
1.21186 1.00295 0.92493 1.03501 1.19221 0.92433 0.94611 0.97423
1.20654 1.05074 0.94293 0.93086 1.20487 0.75148 0.79278 0.91785
1.90699 1.52500 1.55344 1.47636 1.49853 1.62683 1.13293 1.11976
1.22946 0.95666 0.85639 0.95313 1.21999 0.94435 0.96000 0.97751
1.22760 0.96281 0.90988 0.89856 1.22260 0.93098 0.97597 1.01085
1.20918 0.91749 0.84034 0.96822 1.44830 1.17462 1.04459 1.68387
1.19502 1.00998 0.85605 1.30085 0.89581 1.25587 0.97367 1.00910
1.02179 1.70186 1.10810 1.30349 1.48871 0.85068 0.77692 0.79900
0.77036 1.18824 1.22153 1.22512 1.21302 0.88682 0.91776 0.95654
1.20358 0.94809 0.95457 1.07055 0.91785 0.92199 0.87999 0.91425
0.90773 0.83375 0.83198 0.85024 0.85860 0.85861 0.87396 0.89671
0.90847 0.87706 0.90846 0.91216 0.96668 0.97933 0.94617 0.95110
0.92386 0.85642
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.46 10.28 71.98 0.74 -0.72 16
2 C 0.04 0.60 5.46 71.98 0.39 0.99 16
3 O -0.34 -7.33 10.14 -92.47 -0.94 -8.27 16
4 C 0.12 2.68 6.69 22.50 0.15 2.83 16
5 C -0.21 -4.12 9.04 22.36 0.20 -3.92 16
6 C -0.08 -1.57 10.04 22.25 0.22 -1.34 16
7 C -0.16 -3.45 9.70 22.28 0.22 -3.23 16
8 C -0.04 -0.86 4.37 -19.88 -0.09 -0.95 16
9 C -0.09 -1.94 5.65 29.10 0.16 -1.78 16
10 C 0.54 15.29 8.07 87.66 0.71 15.99 16
11 O -0.58 -21.18 16.81 -3.05 -0.05 -21.23 16
12 N -0.64 -16.84 3.70 -859.93 -3.18 -20.02 16
13 C 0.13 3.13 7.78 83.77 0.65 3.79 16
14 C -0.10 -2.96 1.06 -52.63 -0.06 -3.02 16
15 C 0.12 3.19 8.02 83.66 0.67 3.86 16
16 C -0.10 -3.53 6.40 31.32 0.20 -3.33 16
17 C 0.19 8.91 5.39 86.81 0.47 9.38 16
18 N -0.62 -29.90 3.41 -693.48 -2.36 -32.26 16
19 C -0.23 -12.38 10.28 84.03 0.86 -11.51 16
20 H 0.09 4.33 7.83 -2.91 -0.02 4.31 16
21 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16
22 N -0.95 -56.02 10.30 21.65 0.22 -55.80 16
23 Si 0.97 44.60 29.55 68.60 2.03 46.63 16
24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16
25 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16
26 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16
27 C 0.15 5.39 6.70 86.23 0.58 5.97 16
28 C -0.16 -3.92 9.64 22.37 0.22 -3.70 16
29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
31 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16
32 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16
33 H 0.07 0.78 7.66 -2.38 -0.02 0.76 16
34 H 0.15 2.02 6.30 -2.91 -0.02 2.00 16
35 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16
36 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16
37 H 0.12 2.08 8.09 -2.39 -0.02 2.06 16
38 H 0.12 2.17 8.09 -2.38 -0.02 2.15 16
39 H 0.11 2.30 8.06 -2.39 -0.02 2.28 16
40 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16
41 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16
42 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16
43 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16
44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16
45 H 0.02 0.80 7.38 -2.39 -0.02 0.78 16
46 H 0.00 0.13 7.49 -2.39 -0.02 0.11 16
47 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16
48 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16
49 H 0.06 1.91 8.00 -2.39 -0.02 1.89 16
50 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16
Total: -1.00 -73.18 407.53 3.40 -69.77
By element:
Atomic # 1 Polarization: 14.23 SS G_CDS: 0.91 Total: 15.14 kcal
Atomic # 6 Polarization: -0.73 SS G_CDS: 6.77 Total: 6.04 kcal
Atomic # 7 Polarization: -102.76 SS G_CDS: -5.32 Total: -108.08 kcal
Atomic # 8 Polarization: -28.51 SS G_CDS: -0.99 Total: -29.50 kcal
Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal
Total: -73.18 3.40 -69.77 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001073465983.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.733 kcal
(2) G-P(sol) polarization free energy of solvation -73.177 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.444 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.773 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.040 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds