Wall clock time and date at job start Wed Apr 1 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47225 * 2 1 4 4 C 1.35910 * 117.00242 * 180.02562 * 3 2 1 5 5 C 1.38493 * 119.98610 * 0.29172 * 4 3 2 6 6 C 1.39488 * 119.79757 * 180.25539 * 5 4 3 7 7 C 1.47857 * 120.12024 * 179.73093 * 6 5 4 8 8 O 1.21550 * 120.00219 * 4.68553 * 7 6 5 9 9 N 1.34774 * 119.99723 * 184.69636 * 7 6 5 10 10 C 1.47412 * 125.58710 * 174.20698 * 9 7 6 11 11 C 1.54865 * 104.81761 * 204.41392 * 10 9 7 12 12 C 1.55169 * 101.73474 * 322.77405 * 11 10 9 13 13 H 1.08993 * 113.90829 * 158.47202 * 12 11 10 14 14 C 1.53761 * 108.30759 * 285.38178 * 12 11 10 15 15 N 1.46588 * 108.10921 * 124.37738 * 14 12 11 16 16 C 1.36936 * 125.30866 * 181.24271 * 15 14 12 17 17 H 1.07997 * 120.00507 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99792 * 179.72322 * 16 15 14 19 19 N 1.31622 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00084 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47371 * 120.00183 * 20 18 16 23 23 H 1.48510 * 109.46996 * 240.00130 * 20 18 16 24 24 C 1.46714 * 109.37857 * 1.51048 * 15 14 12 25 25 C 1.46712 * 125.59109 * 354.22068 * 9 7 6 26 26 H 1.08993 * 111.52744 * 56.08676 * 25 9 7 27 27 C 1.39599 * 119.75808 * 359.45361 * 6 5 4 28 28 C 1.37962 * 119.97039 * 0.27382 * 27 6 5 29 29 C 1.38290 * 120.20602 * 0.02562 * 28 27 6 30 30 C 1.50701 * 119.88087 * 180.02562 * 29 28 27 31 31 H 1.09006 * 109.47155 * 299.99957 * 1 2 3 32 32 H 1.08999 * 109.47326 * 59.99853 * 1 2 3 33 33 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46738 * 240.00269 * 2 1 3 35 35 H 1.08999 * 109.47326 * 120.00147 * 2 1 3 36 36 H 1.08000 * 120.10374 * 0.02562 * 5 4 3 37 37 H 1.08996 * 110.36795 * 323.24805 * 10 9 7 38 38 H 1.08999 * 110.37253 * 85.46768 * 10 9 7 39 39 H 1.08994 * 110.97799 * 204.65845 * 11 10 9 40 40 H 1.09007 * 110.97081 * 80.87981 * 11 10 9 41 41 H 1.08998 * 109.74585 * 4.70194 * 14 12 11 42 42 H 1.09007 * 109.73214 * 244.04068 * 14 12 11 43 43 H 0.97000 * 120.00614 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.98887 * 101.17420 * 24 15 14 45 45 H 1.09002 * 109.98640 * 222.49121 * 24 15 14 46 46 H 1.08008 * 120.01564 * 180.29687 * 27 6 5 47 47 H 1.07997 * 119.89843 * 179.97438 * 28 27 6 48 48 H 1.09001 * 109.47188 * 89.99401 * 30 29 28 49 49 H 1.08994 * 109.47070 * 210.00014 * 30 29 28 50 50 H 1.09005 * 109.47204 * 329.99561 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1971 0.4269 -0.0072 6 6 5.5793 0.6142 -0.0023 7 6 6.4863 -0.5535 -0.0033 8 8 6.0309 -1.6768 -0.0944 9 7 7.8181 -0.3724 0.0969 10 6 8.8220 -1.4437 0.2291 11 6 10.0335 -0.7684 0.9180 12 6 10.0230 0.6395 0.2656 13 1 10.5428 1.4001 0.8481 14 6 10.5535 0.5097 -1.1718 15 7 9.5451 1.0617 -2.0812 16 6 9.6472 1.1011 -3.4462 17 1 10.5250 0.7038 -3.9338 18 6 8.6194 1.6462 -4.2036 19 7 7.5466 2.1246 -3.6098 20 14 8.7583 1.6993 -6.0656 21 1 10.0524 1.1022 -6.4827 22 1 7.6403 0.9292 -6.6676 23 1 8.6928 3.1095 -6.5268 24 6 8.4122 1.5712 -1.3005 25 6 8.5063 0.9233 0.0927 26 1 8.1280 1.5796 0.8763 27 6 6.1032 1.9081 -0.0023 28 6 5.2540 2.9955 -0.0015 29 6 3.8839 2.8082 0.0000 30 6 2.9631 4.0012 0.0003 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.7859 -0.5718 -0.0123 37 1 8.4348 -2.2519 0.8495 38 1 9.1044 -1.8223 -0.7532 39 1 10.9580 -1.2980 0.6884 40 1 9.8817 -0.7003 1.9953 41 1 10.7263 -0.5404 -1.4071 42 1 11.4847 1.0675 -1.2721 43 1 6.8286 2.5058 -4.1389 44 1 8.4766 2.6559 -1.2146 45 1 7.4738 1.2899 -1.7784 46 1 7.1728 2.0580 -0.0034 47 1 5.6606 3.9960 -0.0011 48 1 2.7401 4.2884 -1.0272 49 1 2.0371 3.7452 0.5152 50 1 3.4461 4.8328 0.5134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076317492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:18 Heat of formation + Delta-G solvation = 17.000192 kcal Electronic energy + Delta-G solvation = -31907.657693 eV Core-core repulsion = 27902.285487 eV Total energy + Delta-G solvation = -4005.372207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.78869 -39.73157 -37.92890 -37.06701 -34.63226 -33.21790 -32.06665 -31.58768 -31.23123 -29.63129 -28.66429 -27.21694 -26.32602 -24.74155 -24.09689 -22.87907 -21.75301 -21.10466 -20.86314 -19.75178 -19.19183 -17.95640 -16.92311 -16.19515 -16.07179 -16.03931 -15.39921 -15.15522 -14.78279 -14.53486 -14.19153 -13.82425 -13.66385 -13.60641 -13.32309 -13.06767 -12.90695 -12.71219 -12.67067 -12.63113 -12.14718 -12.06354 -11.97951 -11.79700 -11.65162 -11.42321 -11.16806 -11.09365 -11.01804 -10.83469 -10.77027 -10.62681 -10.46705 -10.18642 -10.02544 -9.81672 -9.72473 -9.41383 -8.69187 -8.55227 -8.13530 -7.81775 -6.86937 -5.71063 -3.10153 1.19758 1.76170 3.24449 3.26573 3.38546 3.44210 3.44285 3.46840 4.21171 4.45563 4.67225 4.72581 4.88524 4.92123 4.97600 5.15032 5.15588 5.20447 5.22979 5.37847 5.38480 5.44810 5.47888 5.57473 5.65094 5.70926 5.71095 5.77400 5.79731 5.81788 5.89819 5.90983 5.95994 6.01926 6.05641 6.11886 6.29799 6.30486 6.35421 6.45940 6.60867 6.64880 6.70328 6.78073 6.81886 7.02400 7.18615 7.56905 7.58295 7.74644 7.97816 8.28366 8.59889 9.17745 9.79132 10.40259 11.35043 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009657 B = 0.004323 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.714448 B = 6475.958456 C = 7848.638972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.315 6.315 4 C 0.108 3.892 5 C -0.148 4.148 6 C -0.094 4.094 7 C 0.580 3.420 8 O -0.554 6.554 9 N -0.590 5.590 10 C 0.112 3.888 11 C -0.124 4.124 12 C -0.110 4.110 13 H 0.099 0.901 14 C 0.140 3.860 15 N -0.597 5.597 16 C -0.228 4.228 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.917 5.917 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.144 3.856 25 C 0.087 3.913 26 H 0.093 0.907 27 C -0.132 4.132 28 C -0.089 4.089 29 C -0.095 4.095 30 C -0.104 4.104 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.134 0.866 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.027 0.973 42 H 0.024 0.976 43 H 0.253 0.747 44 H 0.028 0.972 45 H 0.112 0.888 46 H 0.175 0.825 47 H 0.132 0.868 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 0.002 12.515 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.230 6.230 4 C 0.063 3.937 5 C -0.167 4.167 6 C -0.097 4.097 7 C 0.371 3.629 8 O -0.434 6.434 9 N -0.322 5.322 10 C -0.011 4.011 11 C -0.162 4.162 12 C -0.130 4.130 13 H 0.117 0.883 14 C 0.014 3.986 15 N -0.323 5.323 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.564 5.564 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.019 3.981 25 C -0.018 4.018 26 H 0.111 0.889 27 C -0.149 4.149 28 C -0.107 4.107 29 C -0.096 4.096 30 C -0.161 4.161 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.152 0.848 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.130 0.870 46 H 0.191 0.809 47 H 0.150 0.850 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.474 -0.414 12.261 13.872 hybrid contribution 0.205 -0.185 -1.210 1.242 sum -6.269 -0.600 11.051 12.720 Atomic orbital electron populations 1.21751 0.92958 1.02649 1.03252 1.22758 0.95554 0.82343 1.01697 1.86010 1.18865 1.28822 1.89263 1.18510 0.82101 0.93302 0.99740 1.21170 0.92795 0.98408 1.04367 1.19523 0.92828 0.93351 1.04037 1.17842 0.80643 0.88487 0.75964 1.90694 1.75921 1.25264 1.51568 1.48047 1.04759 1.08078 1.71300 1.22167 0.87686 0.90446 1.00761 1.22813 0.98049 0.95917 0.99413 1.23095 0.95024 0.96914 0.97926 0.88272 1.21225 0.92881 0.96956 0.87503 1.44133 1.16350 1.70018 1.01821 1.19063 1.02651 1.33965 0.79949 0.90355 1.24770 0.96546 1.00705 0.98143 1.69803 1.07943 1.45487 1.33214 0.86043 0.77281 0.77267 0.85154 1.20546 1.21785 1.21688 1.22199 0.95658 0.94734 0.85518 1.23225 0.91802 0.85626 1.01111 0.88940 1.22991 1.03791 0.91226 0.96925 1.20833 0.91309 0.99347 0.99193 1.19414 0.94483 0.92309 1.03398 1.20621 0.98358 0.94746 1.02354 0.91730 0.91593 0.90559 0.91907 0.92135 0.84811 0.91044 0.91030 0.89861 0.91048 0.95520 0.95862 0.93652 0.95426 0.87015 0.80897 0.85041 0.91263 0.91436 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.05 0.62 5.46 37.16 0.20 0.82 16 3 O -0.32 -4.64 9.16 -19.46 -0.18 -4.82 16 4 C 0.11 1.79 6.65 -39.28 -0.26 1.52 16 5 C -0.15 -2.66 8.58 -39.02 -0.33 -2.99 16 6 C -0.09 -1.83 5.66 -104.99 -0.59 -2.42 16 7 C 0.58 12.15 7.46 -12.33 -0.09 12.06 16 8 O -0.55 -12.79 16.65 5.32 0.09 -12.70 16 9 N -0.59 -11.21 3.01 -168.59 -0.51 -11.71 16 10 C 0.11 1.86 6.42 -2.56 -0.02 1.84 16 11 C -0.12 -1.62 6.30 -24.60 -0.16 -1.78 16 12 C -0.11 -1.70 4.25 -87.87 -0.37 -2.08 16 13 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 14 C 0.14 2.72 6.41 -3.60 -0.02 2.70 16 15 N -0.60 -14.59 3.38 -171.95 -0.58 -15.17 16 16 C -0.23 -6.22 10.25 -15.06 -0.15 -6.37 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 19 N -0.92 -26.11 10.15 55.49 0.56 -25.55 16 20 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.14 3.27 3.38 -3.44 -0.01 3.25 16 25 C 0.09 1.54 2.71 -66.12 -0.18 1.36 16 26 H 0.09 1.44 6.18 -51.93 -0.32 1.12 16 27 C -0.13 -2.37 7.09 -39.18 -0.28 -2.65 16 28 C -0.09 -1.43 9.67 -39.66 -0.38 -1.81 16 29 C -0.10 -1.49 5.90 -104.39 -0.62 -2.10 16 30 C -0.10 -1.30 9.78 36.01 0.35 -0.95 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.79 7.64 -51.93 -0.40 0.39 16 35 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 36 H 0.13 2.33 5.89 -52.49 -0.31 2.02 16 37 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 38 H 0.07 1.33 7.49 -51.93 -0.39 0.94 16 39 H 0.08 0.95 7.96 -51.93 -0.41 0.54 16 40 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 41 H 0.03 0.52 6.78 -51.93 -0.35 0.17 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.03 0.66 7.87 -51.93 -0.41 0.25 16 45 H 0.11 2.92 4.38 -51.93 -0.23 2.69 16 46 H 0.17 3.12 1.72 -59.66 -0.10 3.01 16 47 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 50 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -32.81 383.47 -9.97 -42.78 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.48 Total: 5.09 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.63 Total: -0.80 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.53 Total: -52.44 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.09 Total: -17.52 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.81 -9.97 -42.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076317492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.776 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds