Wall clock time and date at job start Wed Apr 1 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47225 * 2 1 4 4 C 1.35910 * 117.00242 * 180.02562 * 3 2 1 5 5 C 1.38493 * 119.98610 * 0.29172 * 4 3 2 6 6 C 1.39488 * 119.79757 * 180.25539 * 5 4 3 7 7 C 1.47857 * 120.12024 * 179.73093 * 6 5 4 8 8 O 1.21550 * 120.00219 * 4.68553 * 7 6 5 9 9 N 1.34774 * 119.99723 * 184.69636 * 7 6 5 10 10 C 1.47412 * 125.58710 * 174.20698 * 9 7 6 11 11 C 1.54865 * 104.81761 * 204.41392 * 10 9 7 12 12 C 1.55169 * 101.73474 * 322.77405 * 11 10 9 13 13 H 1.08993 * 113.90829 * 158.47202 * 12 11 10 14 14 C 1.53761 * 108.30759 * 285.38178 * 12 11 10 15 15 N 1.46588 * 108.10921 * 124.37738 * 14 12 11 16 16 C 1.36936 * 125.30866 * 181.24271 * 15 14 12 17 17 H 1.07997 * 120.00507 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99792 * 179.72322 * 16 15 14 19 19 N 1.31622 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00084 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47371 * 120.00183 * 20 18 16 23 23 H 1.48510 * 109.46996 * 240.00130 * 20 18 16 24 24 C 1.46714 * 109.37857 * 1.51048 * 15 14 12 25 25 C 1.46712 * 125.59109 * 354.22068 * 9 7 6 26 26 H 1.08993 * 111.52744 * 56.08676 * 25 9 7 27 27 C 1.39599 * 119.75808 * 359.45361 * 6 5 4 28 28 C 1.37962 * 119.97039 * 0.27382 * 27 6 5 29 29 C 1.38290 * 120.20602 * 0.02562 * 28 27 6 30 30 C 1.50701 * 119.88087 * 180.02562 * 29 28 27 31 31 H 1.09006 * 109.47155 * 299.99957 * 1 2 3 32 32 H 1.08999 * 109.47326 * 59.99853 * 1 2 3 33 33 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46738 * 240.00269 * 2 1 3 35 35 H 1.08999 * 109.47326 * 120.00147 * 2 1 3 36 36 H 1.08000 * 120.10374 * 0.02562 * 5 4 3 37 37 H 1.08996 * 110.36795 * 323.24805 * 10 9 7 38 38 H 1.08999 * 110.37253 * 85.46768 * 10 9 7 39 39 H 1.08994 * 110.97799 * 204.65845 * 11 10 9 40 40 H 1.09007 * 110.97081 * 80.87981 * 11 10 9 41 41 H 1.08998 * 109.74585 * 4.70194 * 14 12 11 42 42 H 1.09007 * 109.73214 * 244.04068 * 14 12 11 43 43 H 0.97000 * 120.00614 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.98887 * 101.17420 * 24 15 14 45 45 H 1.09002 * 109.98640 * 222.49121 * 24 15 14 46 46 H 1.08008 * 120.01564 * 180.29687 * 27 6 5 47 47 H 1.07997 * 119.89843 * 179.97438 * 28 27 6 48 48 H 1.09001 * 109.47188 * 89.99401 * 30 29 28 49 49 H 1.08994 * 109.47070 * 210.00014 * 30 29 28 50 50 H 1.09005 * 109.47204 * 329.99561 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1971 0.4269 -0.0072 6 6 5.5793 0.6142 -0.0023 7 6 6.4863 -0.5535 -0.0033 8 8 6.0309 -1.6768 -0.0944 9 7 7.8181 -0.3724 0.0969 10 6 8.8220 -1.4437 0.2291 11 6 10.0335 -0.7684 0.9180 12 6 10.0230 0.6395 0.2656 13 1 10.5428 1.4001 0.8481 14 6 10.5535 0.5097 -1.1718 15 7 9.5451 1.0617 -2.0812 16 6 9.6472 1.1011 -3.4462 17 1 10.5250 0.7038 -3.9338 18 6 8.6194 1.6462 -4.2036 19 7 7.5466 2.1246 -3.6098 20 14 8.7583 1.6993 -6.0656 21 1 10.0524 1.1022 -6.4827 22 1 7.6403 0.9292 -6.6676 23 1 8.6928 3.1095 -6.5268 24 6 8.4122 1.5712 -1.3005 25 6 8.5063 0.9233 0.0927 26 1 8.1280 1.5796 0.8763 27 6 6.1032 1.9081 -0.0023 28 6 5.2540 2.9955 -0.0015 29 6 3.8839 2.8082 0.0000 30 6 2.9631 4.0012 0.0003 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.7859 -0.5718 -0.0123 37 1 8.4348 -2.2519 0.8495 38 1 9.1044 -1.8223 -0.7532 39 1 10.9580 -1.2980 0.6884 40 1 9.8817 -0.7003 1.9953 41 1 10.7263 -0.5404 -1.4071 42 1 11.4847 1.0675 -1.2721 43 1 6.8286 2.5058 -4.1389 44 1 8.4766 2.6559 -1.2146 45 1 7.4738 1.2899 -1.7784 46 1 7.1728 2.0580 -0.0034 47 1 5.6606 3.9960 -0.0011 48 1 2.7401 4.2884 -1.0272 49 1 2.0371 3.7452 0.5152 50 1 3.4461 4.8328 0.5134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076317492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:17 Heat of formation + Delta-G solvation = -2.225768 kcal Electronic energy + Delta-G solvation = -31908.491394 eV Core-core repulsion = 27902.285487 eV Total energy + Delta-G solvation = -4006.205907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.22249 -40.99798 -39.45546 -38.35939 -36.38232 -34.52550 -33.74686 -32.75441 -32.53125 -31.12717 -30.12682 -28.60241 -27.72329 -26.57257 -25.17732 -24.21443 -23.02240 -22.70425 -22.19528 -21.11758 -20.63406 -19.38236 -18.71442 -17.60085 -17.43077 -17.12662 -17.01001 -16.62806 -16.33493 -16.05610 -15.67685 -15.53337 -14.94866 -14.76317 -14.53301 -14.45236 -14.38467 -14.18637 -13.83443 -13.60373 -13.52779 -13.42403 -13.22707 -13.02933 -12.95340 -12.86960 -12.81774 -12.62064 -12.48455 -12.20996 -12.07940 -12.05224 -11.86165 -11.79233 -11.61764 -11.42840 -11.30769 -10.94528 -10.72497 -9.93136 -9.63147 -9.11435 -8.82086 -7.78705 -5.18161 -0.18920 0.43443 1.42611 1.44367 1.53089 1.74444 1.96090 2.22043 2.47814 2.81973 3.29870 3.37986 3.38774 3.64535 3.77299 3.81398 3.93770 3.96812 3.99021 4.09983 4.15757 4.23973 4.26138 4.34215 4.40148 4.44357 4.52988 4.58244 4.69509 4.74423 4.79330 4.83600 4.84645 4.88014 4.91478 4.92169 5.08681 5.12019 5.17169 5.22113 5.25686 5.31892 5.36480 5.38704 5.43182 5.49493 5.54689 5.77014 5.83757 6.29705 6.35577 6.46720 7.03482 7.13161 7.82528 8.41529 9.23839 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009657 B = 0.004323 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.714448 B = 6475.958456 C = 7848.638972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.043 3.957 3 O -0.316 6.316 4 C 0.105 3.895 5 C -0.162 4.162 6 C -0.120 4.120 7 C 0.568 3.432 8 O -0.591 6.591 9 N -0.591 5.591 10 C 0.101 3.899 11 C -0.103 4.103 12 C -0.096 4.096 13 H 0.139 0.861 14 C 0.132 3.868 15 N -0.621 5.621 16 C -0.238 4.238 17 H 0.078 0.922 18 C -0.059 4.059 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.268 1.268 22 H -0.302 1.302 23 H -0.288 1.288 24 C 0.152 3.848 25 C 0.092 3.908 26 H 0.122 0.878 27 C -0.138 4.138 28 C -0.092 4.092 29 C -0.095 4.095 30 C -0.101 4.101 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.129 0.871 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.024 0.976 42 H 0.032 0.968 43 H 0.244 0.756 44 H 0.011 0.989 45 H 0.075 0.925 46 H 0.172 0.828 47 H 0.157 0.843 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 0.985 14.296 15.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 O -0.231 6.231 4 C 0.060 3.940 5 C -0.181 4.181 6 C -0.123 4.123 7 C 0.360 3.640 8 O -0.474 6.474 9 N -0.322 5.322 10 C -0.021 4.021 11 C -0.141 4.141 12 C -0.115 4.115 13 H 0.156 0.844 14 C 0.007 3.993 15 N -0.347 5.347 16 C -0.367 4.367 17 H 0.096 0.904 18 C -0.252 4.252 19 N -0.585 5.585 20 Si 0.797 3.203 21 H -0.192 1.192 22 H -0.230 1.230 23 H -0.215 1.215 24 C 0.027 3.973 25 C -0.012 4.012 26 H 0.139 0.861 27 C -0.156 4.156 28 C -0.110 4.110 29 C -0.096 4.096 30 C -0.157 4.157 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.042 0.958 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.028 0.972 45 H 0.093 0.907 46 H 0.189 0.811 47 H 0.174 0.826 48 H 0.090 0.910 49 H 0.093 0.907 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.832 0.566 14.067 15.239 hybrid contribution 0.001 -0.521 -1.806 1.879 sum -5.831 0.046 12.261 13.577 Atomic orbital electron populations 1.21765 0.90263 1.04184 1.03647 1.23022 0.97635 0.81172 1.01375 1.86017 1.17714 1.30400 1.88934 1.18674 0.82777 0.93344 0.99243 1.21232 0.92775 0.98900 1.05227 1.19587 0.93195 0.93469 1.06055 1.18251 0.81622 0.88546 0.75591 1.90646 1.76700 1.26534 1.53522 1.48184 1.04574 1.09249 1.70146 1.22368 0.88904 0.90770 1.00012 1.22817 0.97024 0.93636 1.00583 1.23184 0.92724 0.99583 0.96037 0.84365 1.21475 0.92282 0.96400 0.89146 1.44433 1.18261 1.70246 1.01751 1.19368 1.02400 1.33028 0.81914 0.90422 1.25476 0.96667 1.01394 1.01699 1.70051 1.08228 1.46401 1.33823 0.85164 0.77147 0.76956 0.81014 1.19239 1.22960 1.21524 1.21918 0.93617 0.93994 0.87782 1.23184 0.93807 0.85289 0.98916 0.86054 1.23006 1.04006 0.91237 0.97345 1.21156 0.91496 0.99930 0.98412 1.19852 0.94956 0.93144 1.01654 1.20687 0.98112 0.94014 1.02915 0.90854 0.91610 0.88467 0.93049 0.91762 0.85329 0.90331 0.93807 0.87450 0.87772 0.95808 0.94974 0.94657 0.97160 0.90728 0.81108 0.82586 0.91016 0.90748 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.04 1.03 5.46 71.98 0.39 1.43 16 3 O -0.32 -9.23 9.16 -92.53 -0.85 -10.08 16 4 C 0.10 3.49 6.65 22.47 0.15 3.64 16 5 C -0.16 -6.06 8.58 22.63 0.19 -5.87 16 6 C -0.12 -4.83 5.66 -20.10 -0.11 -4.94 16 7 C 0.57 24.70 7.46 86.79 0.65 25.35 16 8 O -0.59 -28.62 16.65 -3.87 -0.06 -28.69 16 9 N -0.59 -22.49 3.01 -805.58 -2.43 -24.92 16 10 C 0.10 3.29 6.42 86.84 0.56 3.85 16 11 C -0.10 -2.31 6.30 31.97 0.20 -2.11 16 12 C -0.10 -2.67 4.25 -9.01 -0.04 -2.71 16 13 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 14 C 0.13 4.92 6.41 86.62 0.56 5.48 16 15 N -0.62 -30.54 3.38 -697.94 -2.36 -32.89 16 16 C -0.24 -13.17 10.25 84.03 0.86 -12.31 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 18 C -0.06 -3.32 5.48 84.86 0.47 -2.86 16 19 N -0.94 -55.00 10.15 21.65 0.22 -54.78 16 20 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.30 -14.89 7.11 99.48 0.71 -14.19 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 C 0.15 6.98 3.38 86.65 0.29 7.27 16 25 C 0.09 3.16 2.71 46.05 0.12 3.28 16 26 H 0.12 3.53 6.18 -2.39 -0.01 3.51 16 27 C -0.14 -5.04 7.09 22.53 0.16 -4.88 16 28 C -0.09 -2.91 9.67 22.22 0.21 -2.70 16 29 C -0.10 -2.90 5.90 -19.71 -0.12 -3.02 16 30 C -0.10 -2.31 9.78 71.24 0.70 -1.61 16 31 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.34 7.64 -2.39 -0.02 1.32 16 35 H 0.06 1.49 7.67 -2.39 -0.02 1.47 16 36 H 0.13 4.80 5.89 -2.91 -0.02 4.78 16 37 H 0.08 2.42 8.09 -2.39 -0.02 2.40 16 38 H 0.04 1.65 7.49 -2.39 -0.02 1.63 16 39 H 0.11 1.98 7.96 -2.39 -0.02 1.96 16 40 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.02 0.91 6.78 -2.39 -0.02 0.89 16 42 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 44 H 0.01 0.51 7.87 -2.39 -0.02 0.50 16 45 H 0.07 4.04 4.38 -2.39 -0.01 4.03 16 46 H 0.17 6.16 1.72 -9.65 -0.02 6.15 16 47 H 0.16 4.04 8.06 -2.91 -0.02 4.01 16 48 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.07 1.61 7.52 -2.39 -0.02 1.59 16 50 H 0.09 1.61 8.08 -2.38 -0.02 1.59 16 Total: -1.00 -75.13 383.47 3.48 -71.65 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.94 Total: 25.61 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 5.99 Total: 5.68 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -4.57 Total: -112.60 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.91 Total: -38.77 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -75.13 3.48 -71.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076317492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.425 kcal (2) G-P(sol) polarization free energy of solvation -75.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds