Wall clock time and date at job start Wed Apr 1 2020 03:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47158 * 2 1 4 4 C 1.35913 * 116.99911 * 179.97438 * 3 2 1 5 5 C 1.38852 * 119.98608 * 0.02562 * 4 3 2 6 6 C 1.38233 * 120.24009 * 180.02562 * 5 4 3 7 7 C 1.38004 * 120.20850 * 359.97438 * 6 5 4 8 8 C 1.39565 * 119.96443 * 0.02562 * 7 6 5 9 9 C 1.47869 * 120.11704 * 180.02562 * 8 7 6 10 10 O 1.21548 * 119.99741 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99879 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99554 * 180.02562 * 11 9 8 13 13 H 1.09003 * 112.88780 * 333.15262 * 12 11 9 14 14 C 1.53950 * 113.66265 * 104.50571 * 12 11 9 15 15 C 1.53950 * 87.29592 * 89.73701 * 14 12 11 16 16 H 1.09006 * 113.65941 * 270.17111 * 15 14 12 17 17 N 1.46499 * 113.66414 * 139.20642 * 15 14 12 18 18 C 1.36939 * 119.99933 * 104.77943 * 17 15 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 15 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 15 21 21 N 1.31624 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47173 * 60.00435 * 22 20 18 24 24 H 1.48497 * 109.47172 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47132 * 300.00314 * 22 20 18 26 26 C 1.52914 * 86.78449 * 24.73365 * 15 14 12 27 27 C 1.52907 * 121.14350 * 209.38294 * 26 15 14 28 28 C 1.53946 * 86.78434 * 209.37620 * 27 26 15 29 29 C 1.52906 * 121.13637 * 100.81404 * 26 15 14 30 30 C 1.38449 * 119.98114 * 180.26040 * 4 3 2 31 31 H 1.09000 * 109.46986 * 59.99699 * 1 2 3 32 32 H 1.08997 * 109.47120 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46957 * 299.99842 * 1 2 3 34 34 H 1.09000 * 109.46957 * 240.00158 * 2 1 3 35 35 H 1.08999 * 109.47317 * 120.00731 * 2 1 3 36 36 H 1.08000 * 119.87711 * 359.97438 * 5 4 3 37 37 H 1.08006 * 119.89905 * 179.97438 * 6 5 4 38 38 H 1.07999 * 120.02016 * 179.97438 * 7 6 5 39 39 H 0.96995 * 120.00280 * 0.02562 * 11 9 8 40 40 H 1.08998 * 113.57862 * 335.13403 * 14 12 11 41 41 H 1.08999 * 113.64870 * 204.34696 * 14 12 11 42 42 H 0.97001 * 119.99790 * 284.49917 * 17 15 14 43 43 H 0.96998 * 119.99409 * 179.97438 * 21 20 18 44 44 H 1.09001 * 113.66043 * 323.84687 * 27 26 15 45 45 H 1.09000 * 113.66310 * 94.90448 * 27 26 15 46 46 H 1.09000 * 113.58131 * 270.13296 * 28 27 26 47 47 H 1.08999 * 113.65580 * 139.34498 * 28 27 26 48 48 H 1.08996 * 113.66552 * 265.09839 * 29 26 15 49 49 H 1.09001 * 113.66060 * 36.16135 * 29 26 15 50 50 H 1.07994 * 120.11383 * 0.02562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5253 0.0005 5 6 4.1993 0.4239 0.0005 6 6 5.5705 0.5989 0.0016 7 6 6.1083 1.8699 0.0022 8 6 5.2664 2.9830 0.0022 9 6 5.8390 4.3464 0.0022 10 8 5.1038 5.3143 0.0018 11 7 7.1761 4.5157 0.0028 12 6 7.7434 5.8664 0.0034 13 1 7.0816 6.6043 -0.4501 14 6 8.3077 6.2989 1.3688 15 6 9.6520 5.6960 0.9223 16 1 9.7670 4.6435 1.1816 17 7 10.8135 6.5056 1.2985 18 6 11.6145 6.1128 2.3375 19 1 11.3873 5.2083 2.8823 20 6 12.7184 6.8768 2.6902 21 7 12.9949 7.9793 2.0264 22 14 13.8105 6.3413 4.1079 23 1 14.3803 5.0016 3.8150 24 1 14.9126 7.3213 4.2813 25 1 13.0064 6.2755 5.3547 26 6 9.1810 5.9285 -0.5138 27 6 9.6502 5.0263 -1.6557 28 6 9.4815 6.2492 -2.5755 29 6 9.6784 7.1254 -1.3250 30 6 3.8826 2.8048 0.0060 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.7841 -0.5731 0.0005 37 1 6.2231 -0.2617 0.0020 38 1 7.1801 2.0031 0.0034 39 1 7.7628 3.7433 0.0028 40 1 7.8550 5.7780 2.2125 41 1 8.3390 7.3797 1.5065 42 1 11.0176 7.3179 0.8091 43 1 13.7661 8.5133 2.2732 44 1 10.6834 4.6941 -1.5546 45 1 8.9619 4.2115 -1.8806 46 1 8.4868 6.3316 -3.0134 47 1 10.2779 6.3555 -3.3122 48 1 9.0127 7.9875 -1.2857 49 1 10.7196 7.3831 -1.1310 50 1 3.2262 3.6624 0.0103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078736027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:34 Heat of formation + Delta-G solvation = 8.113762 kcal Electronic energy + Delta-G solvation = -29677.759899 eV Core-core repulsion = 25672.002348 eV Total energy + Delta-G solvation = -4005.757551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.89198 -40.34361 -39.03715 -37.34938 -35.07513 -34.12096 -32.60577 -32.27353 -31.28228 -30.03082 -29.43468 -25.53150 -25.31350 -24.52168 -24.04672 -23.13369 -22.71470 -21.95075 -20.69397 -20.06910 -18.98566 -17.79258 -17.21666 -16.82200 -16.51483 -16.41061 -15.93185 -15.64602 -15.26210 -14.89675 -14.71747 -14.55423 -14.08144 -13.85778 -13.70048 -13.63829 -13.40697 -13.02670 -12.70394 -12.47205 -12.42056 -12.34808 -12.04180 -11.99770 -11.82519 -11.64729 -11.37046 -11.24934 -11.16161 -10.92590 -10.82978 -10.67038 -10.21164 -10.15873 -9.95796 -9.82387 -9.65327 -9.37689 -9.32962 -8.82197 -8.73668 -8.56726 -6.95888 -5.79418 -3.07686 0.57694 1.10366 2.69473 2.76147 3.21567 3.42267 3.47218 3.47888 3.65136 4.37849 4.43504 4.46310 4.57041 4.62397 4.68986 4.72742 4.79117 4.85112 4.96082 4.99385 5.04705 5.15725 5.21382 5.24145 5.28102 5.33327 5.45511 5.58642 5.62764 5.65193 5.83180 5.90630 5.92949 6.01807 6.02900 6.05385 6.06701 6.14681 6.18831 6.21419 6.29706 6.37270 6.42763 6.52353 6.66727 6.77530 6.94228 7.04550 7.07015 7.58058 7.67830 8.23749 8.39529 9.50893 10.08888 10.43779 11.42815 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015973 B = 0.002213 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.557143 B =12650.369389 C =13482.709237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.314 6.314 4 C 0.121 3.879 5 C -0.188 4.188 6 C -0.086 4.086 7 C -0.123 4.123 8 C -0.089 4.089 9 C 0.559 3.441 10 O -0.535 6.535 11 N -0.696 5.696 12 C 0.143 3.857 13 H 0.096 0.904 14 C -0.174 4.174 15 C 0.180 3.820 16 H 0.073 0.927 17 N -0.708 5.708 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.140 4.140 29 C -0.105 4.105 30 C -0.094 4.094 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.400 0.600 40 H 0.058 0.942 41 H 0.087 0.913 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.097 0.903 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.558 -17.358 -8.514 27.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.228 6.228 4 C 0.076 3.924 5 C -0.207 4.207 6 C -0.104 4.104 7 C -0.142 4.142 8 C -0.093 4.093 9 C 0.345 3.655 10 O -0.413 6.413 11 N -0.347 5.347 12 C 0.038 3.962 13 H 0.114 0.886 14 C -0.217 4.217 15 C 0.067 3.933 16 H 0.090 0.910 17 N -0.347 5.347 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.126 4.126 27 C -0.161 4.161 28 C -0.177 4.177 29 C -0.143 4.143 30 C -0.113 4.113 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.236 0.764 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.222 0.778 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.116 0.884 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.090 -16.565 -8.355 27.347 hybrid contribution 1.080 -0.674 0.740 1.472 sum -19.010 -17.239 -7.615 26.769 Atomic orbital electron populations 1.21781 0.92595 1.02896 1.03729 1.22810 0.96057 0.81868 1.01410 1.86106 1.18668 1.29370 1.88675 1.18809 0.82587 0.93721 0.97251 1.21417 0.94468 0.98131 1.06680 1.20886 0.94309 0.97242 0.97934 1.21270 0.99788 0.91964 1.01210 1.19753 0.93278 0.93262 1.02967 1.18129 0.82377 0.88337 0.76635 1.90775 1.59517 1.41307 1.49669 1.45521 1.06001 1.09206 1.73927 1.21542 0.92826 0.83205 0.98649 0.88562 1.24294 1.00129 1.02099 0.95131 1.21389 0.86713 0.94878 0.90274 0.90951 1.42357 1.27480 1.27145 1.37696 1.19231 1.04475 1.06242 1.07486 0.91260 1.24746 0.98944 0.97420 0.99702 1.69645 1.29765 1.15921 1.42627 0.86278 0.80212 0.77444 0.82293 1.21305 1.21714 1.21283 1.23389 0.94470 0.98685 0.96009 1.22647 1.01448 0.96140 0.95899 1.22824 1.01064 0.97214 0.96633 1.22470 1.02453 0.95355 0.93977 1.20469 0.94092 0.95528 1.01234 0.91415 0.90317 0.91385 0.91966 0.91937 0.85172 0.84990 0.85196 0.76393 0.92285 0.89480 0.77776 0.93422 0.89575 0.92302 0.90937 0.91859 0.91765 0.88415 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.35 16 2 C 0.05 0.33 5.46 37.16 0.20 0.53 16 3 O -0.31 -3.13 10.13 -19.47 -0.20 -3.33 16 4 C 0.12 1.28 6.68 -39.28 -0.26 1.01 16 5 C -0.19 -1.58 9.03 -39.36 -0.36 -1.94 16 6 C -0.09 -0.70 10.02 -39.67 -0.40 -1.10 16 7 C -0.12 -1.19 9.54 -39.17 -0.37 -1.56 16 8 C -0.09 -1.09 5.87 -104.98 -0.62 -1.71 16 9 C 0.56 8.18 7.77 -12.32 -0.10 8.09 16 10 O -0.54 -9.70 15.99 5.32 0.09 -9.62 16 11 N -0.70 -9.37 4.81 -54.30 -0.26 -9.63 16 12 C 0.14 2.22 4.08 -67.48 -0.28 1.95 16 13 H 0.10 1.60 7.54 -51.93 -0.39 1.21 16 14 C -0.17 -3.14 7.68 -25.75 -0.20 -3.33 16 15 C 0.18 3.42 4.28 -67.48 -0.29 3.13 16 16 H 0.07 1.36 8.12 -51.93 -0.42 0.93 16 17 N -0.71 -17.05 5.34 -52.99 -0.28 -17.34 16 18 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 C -0.12 -1.93 0.91 -154.71 -0.14 -2.08 16 27 C -0.12 -1.71 7.59 -26.29 -0.20 -1.91 16 28 C -0.14 -1.88 8.08 -25.75 -0.21 -2.09 16 29 C -0.10 -1.66 7.16 -26.28 -0.19 -1.84 16 30 C -0.09 -1.15 9.53 -39.02 -0.37 -1.52 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 35 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 36 H 0.13 0.76 6.28 -52.49 -0.33 0.43 16 37 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.13 1.02 6.40 -52.49 -0.34 0.68 16 39 H 0.40 4.52 6.30 -40.82 -0.26 4.26 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 42 H 0.39 9.85 6.12 -40.82 -0.25 9.60 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.06 0.71 7.50 -51.93 -0.39 0.32 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.10 1.77 6.96 -51.93 -0.36 1.41 16 50 H 0.14 1.87 7.65 -52.49 -0.40 1.47 16 LS Contribution 405.32 15.07 6.11 6.11 Total: -1.00 -32.22 405.32 -10.19 -42.41 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -7.71 Total: 13.01 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.63 Total: -11.85 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.18 Total: -53.80 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.11 Total: -12.94 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.22 -10.19 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078736027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.519 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds