Wall clock time and date at job start Wed Apr 1 2020 03:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47158 * 2 1 4 4 C 1.35913 * 116.99911 * 179.97438 * 3 2 1 5 5 C 1.38852 * 119.98608 * 0.02562 * 4 3 2 6 6 C 1.38233 * 120.24009 * 180.02562 * 5 4 3 7 7 C 1.38004 * 120.20850 * 359.97438 * 6 5 4 8 8 C 1.39565 * 119.96443 * 0.02562 * 7 6 5 9 9 C 1.47869 * 120.11704 * 180.02562 * 8 7 6 10 10 O 1.21548 * 119.99741 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99879 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99554 * 180.02562 * 11 9 8 13 13 H 1.09003 * 112.88780 * 333.15262 * 12 11 9 14 14 C 1.53950 * 113.66265 * 104.50571 * 12 11 9 15 15 C 1.53950 * 87.29592 * 89.73701 * 14 12 11 16 16 H 1.09006 * 113.65941 * 270.17111 * 15 14 12 17 17 N 1.46499 * 113.66414 * 139.20642 * 15 14 12 18 18 C 1.36939 * 119.99933 * 104.77943 * 17 15 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 15 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 15 21 21 N 1.31624 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47173 * 60.00435 * 22 20 18 24 24 H 1.48497 * 109.47172 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47132 * 300.00314 * 22 20 18 26 26 C 1.52914 * 86.78449 * 24.73365 * 15 14 12 27 27 C 1.52907 * 121.14350 * 209.38294 * 26 15 14 28 28 C 1.53946 * 86.78434 * 209.37620 * 27 26 15 29 29 C 1.52906 * 121.13637 * 100.81404 * 26 15 14 30 30 C 1.38449 * 119.98114 * 180.26040 * 4 3 2 31 31 H 1.09000 * 109.46986 * 59.99699 * 1 2 3 32 32 H 1.08997 * 109.47120 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46957 * 299.99842 * 1 2 3 34 34 H 1.09000 * 109.46957 * 240.00158 * 2 1 3 35 35 H 1.08999 * 109.47317 * 120.00731 * 2 1 3 36 36 H 1.08000 * 119.87711 * 359.97438 * 5 4 3 37 37 H 1.08006 * 119.89905 * 179.97438 * 6 5 4 38 38 H 1.07999 * 120.02016 * 179.97438 * 7 6 5 39 39 H 0.96995 * 120.00280 * 0.02562 * 11 9 8 40 40 H 1.08998 * 113.57862 * 335.13403 * 14 12 11 41 41 H 1.08999 * 113.64870 * 204.34696 * 14 12 11 42 42 H 0.97001 * 119.99790 * 284.49917 * 17 15 14 43 43 H 0.96998 * 119.99409 * 179.97438 * 21 20 18 44 44 H 1.09001 * 113.66043 * 323.84687 * 27 26 15 45 45 H 1.09000 * 113.66310 * 94.90448 * 27 26 15 46 46 H 1.09000 * 113.58131 * 270.13296 * 28 27 26 47 47 H 1.08999 * 113.65580 * 139.34498 * 28 27 26 48 48 H 1.08996 * 113.66552 * 265.09839 * 29 26 15 49 49 H 1.09001 * 113.66060 * 36.16135 * 29 26 15 50 50 H 1.07994 * 120.11383 * 0.02562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5253 0.0005 5 6 4.1993 0.4239 0.0005 6 6 5.5705 0.5989 0.0016 7 6 6.1083 1.8699 0.0022 8 6 5.2664 2.9830 0.0022 9 6 5.8390 4.3464 0.0022 10 8 5.1038 5.3143 0.0018 11 7 7.1761 4.5157 0.0028 12 6 7.7434 5.8664 0.0034 13 1 7.0816 6.6043 -0.4501 14 6 8.3077 6.2989 1.3688 15 6 9.6520 5.6960 0.9223 16 1 9.7670 4.6435 1.1816 17 7 10.8135 6.5056 1.2985 18 6 11.6145 6.1128 2.3375 19 1 11.3873 5.2083 2.8823 20 6 12.7184 6.8768 2.6902 21 7 12.9949 7.9793 2.0264 22 14 13.8105 6.3413 4.1079 23 1 14.3803 5.0016 3.8150 24 1 14.9126 7.3213 4.2813 25 1 13.0064 6.2755 5.3547 26 6 9.1810 5.9285 -0.5138 27 6 9.6502 5.0263 -1.6557 28 6 9.4815 6.2492 -2.5755 29 6 9.6784 7.1254 -1.3250 30 6 3.8826 2.8048 0.0060 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.7841 -0.5731 0.0005 37 1 6.2231 -0.2617 0.0020 38 1 7.1801 2.0031 0.0034 39 1 7.7628 3.7433 0.0028 40 1 7.8550 5.7780 2.2125 41 1 8.3390 7.3797 1.5065 42 1 11.0176 7.3179 0.8091 43 1 13.7661 8.5133 2.2732 44 1 10.6834 4.6941 -1.5546 45 1 8.9619 4.2115 -1.8806 46 1 8.4868 6.3316 -3.0134 47 1 10.2779 6.3555 -3.3122 48 1 9.0127 7.9875 -1.2857 49 1 10.7196 7.3831 -1.1310 50 1 3.2262 3.6624 0.0103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078736027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:33 Heat of formation + Delta-G solvation = -10.988412 kcal Electronic energy + Delta-G solvation = -29678.588232 eV Core-core repulsion = 25672.002348 eV Total energy + Delta-G solvation = -4006.585884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.08282 -41.22933 -40.10587 -38.15787 -36.45481 -35.77683 -34.01613 -32.90393 -32.29236 -31.49182 -30.37935 -26.77178 -26.72390 -25.72155 -25.31142 -24.24164 -23.43951 -23.19773 -21.83396 -21.21429 -19.93381 -19.38155 -18.77791 -17.76579 -17.28660 -17.06934 -16.94620 -16.90936 -16.40943 -16.32638 -15.97900 -15.85685 -15.49715 -15.02435 -14.74978 -14.40188 -14.28979 -14.24780 -13.89272 -13.50195 -13.39096 -13.34191 -13.17803 -13.06430 -12.90742 -12.79902 -12.72033 -12.60687 -12.58631 -12.19157 -12.01158 -11.90655 -11.81520 -11.66246 -11.32189 -11.25221 -11.02517 -10.85043 -10.64766 -10.19439 -9.94301 -9.29549 -8.93653 -7.92012 -5.19469 -0.25316 0.37318 1.48344 1.50820 1.56684 1.76720 1.85844 2.31958 2.57971 2.80034 3.38328 3.43366 3.54287 3.67076 3.77117 3.77959 3.93938 3.99746 4.02000 4.07675 4.11403 4.13874 4.17761 4.29494 4.32347 4.38244 4.47312 4.57874 4.62905 4.72246 4.79057 4.84162 4.92300 4.94899 4.96958 4.98565 5.08257 5.11991 5.12459 5.15677 5.22690 5.24490 5.29864 5.34706 5.49389 5.52072 5.60558 5.66137 5.66790 6.29817 6.40068 6.48303 7.11988 7.36853 8.14400 8.37841 9.30848 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015973 B = 0.002213 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.557143 B =12650.369389 C =13482.709237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.044 3.956 3 O -0.337 6.337 4 C 0.114 3.886 5 C -0.177 4.177 6 C -0.078 4.078 7 C -0.121 4.121 8 C -0.107 4.107 9 C 0.559 3.441 10 O -0.579 6.579 11 N -0.684 5.684 12 C 0.162 3.838 13 H 0.088 0.912 14 C -0.174 4.174 15 C 0.168 3.832 16 H 0.081 0.919 17 N -0.720 5.720 18 C -0.241 4.241 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.970 3.030 23 H -0.275 1.275 24 H -0.299 1.299 25 H -0.282 1.282 26 C -0.112 4.112 27 C -0.115 4.115 28 C -0.126 4.126 29 C -0.115 4.115 30 C -0.119 4.119 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.150 0.850 39 H 0.414 0.586 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.377 0.623 43 H 0.250 0.750 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.924 -21.353 -9.152 30.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 O -0.252 6.252 4 C 0.068 3.932 5 C -0.195 4.195 6 C -0.096 4.096 7 C -0.139 4.139 8 C -0.110 4.110 9 C 0.347 3.653 10 O -0.460 6.460 11 N -0.335 5.335 12 C 0.055 3.945 13 H 0.106 0.894 14 C -0.216 4.216 15 C 0.058 3.942 16 H 0.099 0.901 17 N -0.358 5.358 18 C -0.373 4.373 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.799 3.201 23 H -0.201 1.201 24 H -0.225 1.225 25 H -0.209 1.209 26 C -0.115 4.115 27 C -0.152 4.152 28 C -0.163 4.163 29 C -0.153 4.153 30 C -0.139 4.139 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.179 0.821 37 H 0.186 0.814 38 H 0.168 0.832 39 H 0.252 0.748 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.210 0.790 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.486 -20.631 -9.000 30.436 hybrid contribution 1.051 0.488 0.947 1.497 sum -19.435 -20.143 -8.053 29.126 Atomic orbital electron populations 1.21826 0.91895 1.04235 1.02976 1.23136 0.96729 0.80399 1.02790 1.86093 1.18539 1.31872 1.88660 1.18880 0.83282 0.93627 0.97390 1.21803 0.94499 0.98744 1.04496 1.21324 0.94637 0.97643 0.95982 1.21526 1.00453 0.91736 1.00232 1.19553 0.93493 0.92476 1.05460 1.18581 0.82198 0.89087 0.75396 1.90750 1.60490 1.42992 1.51723 1.45355 1.05962 1.08702 1.73497 1.21189 0.92547 0.84234 0.96503 0.89430 1.24164 0.99935 1.00900 0.96611 1.21676 0.85170 0.94559 0.92783 0.90118 1.42514 1.28606 1.27478 1.37242 1.19638 1.04237 1.05858 1.07544 0.90574 1.25521 1.00822 0.97904 1.02519 1.69807 1.30289 1.17288 1.44479 0.85262 0.78197 0.77118 0.79475 1.20149 1.22502 1.20856 1.23217 0.93820 0.99761 0.94659 1.22613 1.01526 0.96769 0.94300 1.22773 1.02235 0.95594 0.95719 1.22467 1.00852 0.95931 0.96030 1.20409 0.94192 0.95981 1.03295 0.92110 0.87880 0.92235 0.90369 0.90548 0.82077 0.81365 0.83229 0.74783 0.92600 0.91376 0.78978 0.94167 0.90287 0.89695 0.89557 0.90749 0.91790 0.91016 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 71.98 0.74 -0.47 16 2 C 0.04 0.44 5.46 71.98 0.39 0.83 16 3 O -0.34 -6.47 10.13 -92.57 -0.94 -7.40 16 4 C 0.11 2.25 6.68 22.47 0.15 2.40 16 5 C -0.18 -2.35 9.03 22.42 0.20 -2.14 16 6 C -0.08 -0.94 10.02 22.21 0.22 -0.71 16 7 C -0.12 -1.96 9.54 22.53 0.21 -1.74 16 8 C -0.11 -2.52 5.87 -20.10 -0.12 -2.64 16 9 C 0.56 16.32 7.77 86.79 0.67 16.99 16 10 O -0.58 -21.75 15.99 -3.87 -0.06 -21.81 16 11 N -0.68 -17.58 4.81 -443.99 -2.14 -19.72 16 12 C 0.16 4.96 4.08 45.28 0.18 5.15 16 13 H 0.09 2.93 7.54 -2.39 -0.02 2.91 16 14 C -0.17 -6.36 7.68 31.23 0.24 -6.12 16 15 C 0.17 6.38 4.28 45.28 0.19 6.57 16 16 H 0.08 2.92 8.12 -2.38 -0.02 2.90 16 17 N -0.72 -35.29 5.34 -321.55 -1.72 -37.00 16 18 C -0.24 -13.08 9.98 84.03 0.84 -12.24 16 19 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 21 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 22 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 26 C -0.11 -3.46 0.91 -52.31 -0.05 -3.50 16 27 C -0.11 -2.90 7.59 30.88 0.23 -2.67 16 28 C -0.13 -3.14 8.08 31.23 0.25 -2.89 16 29 C -0.11 -3.64 7.16 30.89 0.22 -3.42 16 30 C -0.12 -2.97 9.53 22.63 0.22 -2.75 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.53 7.66 -2.39 -0.02 0.51 16 35 H 0.08 0.55 7.66 -2.39 -0.02 0.53 16 36 H 0.16 1.10 6.28 -2.91 -0.02 1.08 16 37 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.15 1.74 6.40 -2.91 -0.02 1.73 16 39 H 0.41 8.29 6.30 -92.71 -0.58 7.71 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.38 19.85 6.12 -92.71 -0.57 19.29 16 43 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 44 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.08 1.73 7.50 -2.39 -0.02 1.71 16 46 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.07 2.68 6.96 -2.39 -0.02 2.67 16 50 H 0.12 3.43 7.65 -2.91 -0.02 3.41 16 Total: -1.00 -72.70 405.32 2.55 -70.16 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: -0.19 Total: 39.58 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 5.28 Total: -13.17 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -3.57 Total: -115.14 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.00 Total: -29.21 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -72.70 2.55 -70.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078736027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.168 kcal (2) G-P(sol) polarization free energy of solvation -72.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds