Wall clock time and date at job start Wed Apr 1 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47379 * 2 1 4 4 C 1.35910 * 117.00386 * 180.02562 * 3 2 1 5 5 C 1.38848 * 119.98132 * 359.97438 * 4 3 2 6 6 C 1.38246 * 120.23917 * 179.97438 * 5 4 3 7 7 C 1.38003 * 120.20408 * 359.76816 * 6 5 4 8 8 C 1.39566 * 119.96588 * 0.53009 * 7 6 5 9 9 C 1.47860 * 120.11967 * 179.72491 * 8 7 6 10 10 O 1.21551 * 120.00138 * 179.72705 * 9 8 7 11 11 N 1.34780 * 120.00184 * 359.72127 * 9 8 7 12 12 C 1.46496 * 119.99975 * 180.02562 * 11 9 8 13 13 H 1.08996 * 112.88664 * 23.65838 * 12 11 9 14 14 C 1.53952 * 113.65979 * 252.18769 * 12 11 9 15 15 C 1.53954 * 87.29718 * 270.26260 * 14 12 11 16 16 H 1.09002 * 113.74607 * 89.75069 * 15 14 12 17 17 N 1.46498 * 113.66167 * 220.79713 * 15 14 12 18 18 C 1.36943 * 119.99752 * 251.90877 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 C 1.52909 * 86.78194 * 335.27068 * 15 14 12 27 27 C 1.52916 * 121.13545 * 259.17990 * 26 15 14 28 28 C 1.53944 * 86.78375 * 209.37932 * 27 26 15 29 29 C 1.52903 * 121.13947 * 150.62172 * 26 15 14 30 30 C 1.38447 * 119.98527 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46740 * 299.99764 * 1 2 3 33 33 H 1.08999 * 109.47274 * 59.99817 * 1 2 3 34 34 H 1.09009 * 109.47088 * 240.00451 * 2 1 3 35 35 H 1.08999 * 109.47274 * 120.00183 * 2 1 3 36 36 H 1.08004 * 119.88145 * 359.97438 * 5 4 3 37 37 H 1.07999 * 119.89659 * 180.02562 * 6 5 4 38 38 H 1.07998 * 120.02076 * 180.27743 * 7 6 5 39 39 H 0.97002 * 119.99472 * 0.02562 * 11 9 8 40 40 H 1.09000 * 113.57696 * 155.66400 * 14 12 11 41 41 H 1.08997 * 113.58404 * 24.86925 * 14 12 11 42 42 H 0.97001 * 120.00384 * 72.19233 * 17 15 14 43 43 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 44 44 H 1.09003 * 113.66006 * 323.85283 * 27 26 15 45 45 H 1.09000 * 113.66434 * 94.90668 * 27 26 15 46 46 H 1.08999 * 113.58449 * 270.13378 * 28 27 26 47 47 H 1.09000 * 113.58404 * 139.33091 * 28 27 26 48 48 H 1.09002 * 113.66292 * 265.08700 * 29 26 15 49 49 H 1.09002 * 113.66630 * 36.13814 * 29 26 15 50 50 H 1.08007 * 120.10487 * 359.97438 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5254 -0.0005 5 6 4.1992 0.4240 -0.0005 6 6 5.5706 0.5990 -0.0016 7 6 6.1083 1.8700 -0.0075 8 6 5.2664 2.9831 -0.0013 9 6 5.8389 4.3464 -0.0015 10 8 5.1037 5.3143 -0.0010 11 7 7.1760 4.5158 -0.0020 12 6 7.7432 5.8665 -0.0016 13 1 7.0595 6.6132 0.4020 14 6 8.3795 6.2698 -1.3442 15 6 9.6979 5.6774 -0.8141 16 1 9.8267 4.6194 -1.0422 17 7 10.8781 6.4796 -1.1455 18 6 11.7689 6.0315 -2.0841 19 1 11.5990 5.0889 -2.5832 20 6 12.8902 6.7887 -2.3941 21 7 13.0975 7.9373 -1.7854 22 14 14.1050 6.1779 -3.6749 23 1 13.6464 4.8700 -4.2080 24 1 14.1912 7.1614 -4.7842 25 1 15.4430 6.0170 -3.0510 26 6 9.1514 5.9405 0.5896 27 6 9.6058 7.1549 1.4001 28 6 9.3425 6.3058 2.6569 29 6 9.5589 5.0635 1.7739 30 6 3.8826 2.8049 0.0000 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 3.7841 -0.5730 0.0003 37 1 6.2231 -0.2616 -0.0020 38 1 7.1800 2.0032 -0.0129 39 1 7.7627 3.7433 -0.0027 40 1 8.4181 7.3476 -1.5021 41 1 7.9719 5.7307 -2.1994 42 1 11.0307 7.3261 -0.6972 43 1 13.8808 8.4666 -2.0022 44 1 10.6559 7.4091 1.2560 45 1 8.9436 8.0157 1.3071 46 1 8.3259 6.3969 3.0397 47 1 10.0995 6.4272 3.4317 48 1 8.8592 4.2533 1.9795 49 1 10.5958 4.7297 1.7349 50 1 3.2260 3.6625 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078736028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:37 Heat of formation + Delta-G solvation = 7.614639 kcal Electronic energy + Delta-G solvation = -29677.293650 eV Core-core repulsion = 25671.514455 eV Total energy + Delta-G solvation = -4005.779195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.89014 -40.34069 -39.03677 -37.35055 -35.07575 -34.12486 -32.60964 -32.27608 -31.28512 -30.03505 -29.43991 -25.51619 -25.31320 -24.51596 -24.04292 -23.13723 -22.71627 -21.95971 -20.69326 -20.07828 -18.98763 -17.80152 -17.21351 -16.82591 -16.51661 -16.41251 -15.92179 -15.63921 -15.25668 -14.91031 -14.70651 -14.55846 -14.08231 -13.85256 -13.69723 -13.64248 -13.41631 -13.02856 -12.67460 -12.48513 -12.42366 -12.35802 -12.04237 -11.99885 -11.83827 -11.64090 -11.36914 -11.25108 -11.16326 -10.94914 -10.83356 -10.66440 -10.19123 -10.11690 -9.96346 -9.84150 -9.66120 -9.36264 -9.33030 -8.83619 -8.73876 -8.56904 -6.96531 -5.80496 -3.08704 0.57440 1.10230 2.69305 2.75759 3.21565 3.40829 3.46775 3.48860 3.64848 4.37752 4.43364 4.46137 4.56303 4.62294 4.68958 4.73827 4.79178 4.85233 4.96843 4.99981 5.05805 5.15579 5.22492 5.24888 5.27884 5.33159 5.44792 5.58474 5.62606 5.65654 5.83364 5.91008 5.93436 6.02216 6.02939 6.05517 6.06749 6.14671 6.19910 6.22736 6.29498 6.37754 6.43041 6.51811 6.65401 6.78943 6.94771 7.04372 7.05862 7.58037 7.67858 8.23407 8.38364 9.49943 10.07981 10.42769 11.41849 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.002202 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.497502 B =12712.334480 C =13532.974424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.314 6.314 4 C 0.121 3.879 5 C -0.188 4.188 6 C -0.086 4.086 7 C -0.123 4.123 8 C -0.089 4.089 9 C 0.559 3.441 10 O -0.536 6.536 11 N -0.696 5.696 12 C 0.142 3.858 13 H 0.098 0.902 14 C -0.174 4.174 15 C 0.180 3.820 16 H 0.074 0.926 17 N -0.708 5.708 18 C -0.242 4.242 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.125 4.125 27 C -0.104 4.104 28 C -0.140 4.140 29 C -0.123 4.123 30 C -0.094 4.094 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.400 0.600 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.387 0.613 43 H 0.255 0.745 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.097 -17.189 7.723 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.228 6.228 4 C 0.076 3.924 5 C -0.207 4.207 6 C -0.104 4.104 7 C -0.142 4.142 8 C -0.093 4.093 9 C 0.345 3.655 10 O -0.413 6.413 11 N -0.346 5.346 12 C 0.037 3.963 13 H 0.116 0.884 14 C -0.217 4.217 15 C 0.068 3.932 16 H 0.092 0.908 17 N -0.346 5.346 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.128 4.128 27 C -0.142 4.142 28 C -0.177 4.177 29 C -0.161 4.161 30 C -0.113 4.113 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.236 0.764 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.222 0.778 43 H 0.065 0.935 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.104 0.896 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.624 -16.421 7.575 27.430 hybrid contribution 1.149 -0.682 -0.661 1.491 sum -19.475 -17.103 6.914 26.825 Atomic orbital electron populations 1.21780 0.92596 1.02897 1.03727 1.22812 0.96056 0.81865 1.01410 1.86105 1.18670 1.29374 1.88675 1.18806 0.82587 0.93721 0.97255 1.21422 0.94468 0.98132 1.06672 1.20889 0.94307 0.97246 0.97929 1.21271 0.99798 0.91963 1.01190 1.19749 0.93276 0.93260 1.02985 1.18132 0.82392 0.88337 0.76603 1.90774 1.59525 1.41305 1.49718 1.45517 1.05995 1.09221 1.73878 1.21550 0.93041 0.83279 0.98426 0.88430 1.24298 0.99793 1.02169 0.95408 1.21393 0.86415 0.94978 0.90464 0.90796 1.42373 1.22717 1.22986 1.46514 1.19333 1.00847 1.03375 1.13801 0.91132 1.24750 0.98787 0.97046 1.00278 1.69665 1.29453 1.13612 1.45168 0.86135 0.81250 0.77802 0.81090 1.20585 1.21886 1.21901 1.23446 0.94855 0.98697 0.95800 1.22466 1.02539 0.95278 0.93951 1.22822 1.00920 0.97244 0.96758 1.22638 1.01482 0.96137 0.95827 1.20470 0.94092 0.95526 1.01238 0.90316 0.91409 0.91392 0.91938 0.91962 0.85171 0.84987 0.85186 0.76385 0.89484 0.92237 0.77778 0.93515 0.88413 0.91824 0.90957 0.91896 0.92325 0.89615 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.34 16 2 C 0.05 0.33 5.46 37.16 0.20 0.53 16 3 O -0.31 -3.12 10.13 -19.46 -0.20 -3.32 16 4 C 0.12 1.27 6.68 -39.28 -0.26 1.01 16 5 C -0.19 -1.58 9.03 -39.35 -0.36 -1.93 16 6 C -0.09 -0.70 10.03 -39.66 -0.40 -1.09 16 7 C -0.12 -1.18 9.54 -39.17 -0.37 -1.56 16 8 C -0.09 -1.09 5.87 -104.98 -0.62 -1.70 16 9 C 0.56 8.16 7.77 -12.32 -0.10 8.06 16 10 O -0.54 -9.67 15.94 5.32 0.08 -9.59 16 11 N -0.70 -9.34 4.76 -54.31 -0.26 -9.60 16 12 C 0.14 2.21 4.12 -67.48 -0.28 1.93 16 13 H 0.10 1.62 7.46 -51.93 -0.39 1.24 16 14 C -0.17 -3.11 7.68 -25.75 -0.20 -3.30 16 15 C 0.18 3.41 4.27 -67.48 -0.29 3.12 16 16 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 17 N -0.71 -16.98 5.30 -52.99 -0.28 -17.26 16 18 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 22 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 C -0.13 -1.97 0.92 -154.71 -0.14 -2.12 16 27 C -0.10 -1.66 7.15 -26.28 -0.19 -1.85 16 28 C -0.14 -1.90 8.08 -25.75 -0.21 -2.11 16 29 C -0.12 -1.72 7.62 -26.28 -0.20 -1.92 16 30 C -0.09 -1.14 9.53 -39.02 -0.37 -1.52 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.32 7.66 -51.92 -0.40 -0.08 16 35 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 36 H 0.13 0.76 6.28 -52.48 -0.33 0.43 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.13 1.02 6.40 -52.49 -0.34 0.68 16 39 H 0.40 4.52 6.45 -40.82 -0.26 4.26 16 40 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.39 9.84 6.23 -40.82 -0.25 9.59 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.10 1.78 7.03 -51.93 -0.36 1.42 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 0.72 7.58 -51.93 -0.39 0.33 16 49 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.14 1.87 7.65 -52.48 -0.40 1.46 16 LS Contribution 405.55 15.07 6.11 6.11 Total: -1.00 -32.16 405.55 -10.20 -42.36 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -7.72 Total: 12.99 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -3.64 Total: -11.92 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.19 Total: -53.66 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.11 Total: -12.91 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.16 -10.20 -42.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078736028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.970 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds