Wall clock time and date at job start Wed Apr 1 2020 03:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47169 * 2 1 4 4 C 1.35906 * 117.00302 * 179.97438 * 3 2 1 5 5 C 1.38851 * 119.98211 * 0.02719 * 4 3 2 6 6 C 1.38247 * 120.23663 * 179.97438 * 5 4 3 7 7 C 1.38008 * 120.20827 * 359.78064 * 6 5 4 8 8 C 1.39561 * 119.96173 * 0.46975 * 7 6 5 9 9 C 1.47859 * 120.11582 * 179.79173 * 8 7 6 10 10 O 1.21552 * 120.00160 * 179.44986 * 9 8 7 11 11 N 1.34784 * 120.00013 * 359.72040 * 9 8 7 12 12 C 1.46499 * 119.99893 * 179.72934 * 11 9 8 13 13 H 1.08991 * 112.88719 * 26.83832 * 12 11 9 14 14 C 1.53955 * 113.65676 * 255.49407 * 12 11 9 15 15 C 1.53952 * 87.29427 * 270.26312 * 14 12 11 16 16 H 1.08999 * 113.66330 * 220.79478 * 15 14 12 17 17 N 1.46501 * 113.66139 * 89.73956 * 15 14 12 18 18 C 1.36940 * 119.99705 * 104.50483 * 17 15 14 19 19 H 1.07996 * 120.00229 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99675 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00270 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47200 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47280 * 119.99839 * 22 20 18 25 25 H 1.48503 * 109.47543 * 240.00102 * 22 20 18 26 26 C 1.52906 * 113.66158 * 158.31142 * 12 11 9 27 27 C 1.52913 * 121.13858 * 323.84519 * 26 12 11 28 28 C 1.53955 * 86.78283 * 209.38119 * 27 26 12 29 29 C 1.52912 * 121.13914 * 215.28521 * 26 12 11 30 30 C 1.38454 * 119.98828 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46907 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47495 * 300.00146 * 1 2 3 33 33 H 1.09002 * 109.46930 * 59.99666 * 1 2 3 34 34 H 1.08994 * 109.47024 * 240.00280 * 2 1 3 35 35 H 1.08997 * 109.46961 * 119.99853 * 2 1 3 36 36 H 1.07994 * 119.88372 * 359.96939 * 5 4 3 37 37 H 1.08006 * 119.89620 * 180.02562 * 6 5 4 38 38 H 1.08001 * 120.01332 * 180.23775 * 7 6 5 39 39 H 0.97005 * 119.99846 * 359.72723 * 11 9 8 40 40 H 1.08997 * 113.58538 * 24.86529 * 14 12 11 41 41 H 1.09001 * 113.57453 * 155.66172 * 14 12 11 42 42 H 0.96995 * 119.99831 * 284.50869 * 17 15 14 43 43 H 0.96993 * 120.00245 * 179.97438 * 21 20 18 44 44 H 1.08995 * 113.66578 * 323.85187 * 27 26 12 45 45 H 1.09002 * 113.66302 * 94.90976 * 27 26 12 46 46 H 1.09008 * 113.58018 * 270.13298 * 28 27 26 47 47 H 1.08992 * 113.57954 * 139.34343 * 28 27 26 48 48 H 1.08997 * 113.66355 * 265.09722 * 29 26 12 49 49 H 1.09002 * 113.65946 * 36.15228 * 29 26 12 50 50 H 1.08003 * 120.10362 * 0.04242 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1992 0.4240 0.0005 6 6 5.5705 0.5991 0.0005 7 6 6.1083 1.8702 -0.0040 8 6 5.2663 2.9832 0.0013 9 6 5.8388 4.3465 0.0012 10 8 5.1036 5.3144 -0.0043 11 7 7.1759 4.5159 0.0016 12 6 7.7431 5.8666 -0.0045 13 1 7.0807 6.6065 0.4445 14 6 8.3092 6.2927 -1.3714 15 6 9.6530 5.6919 -0.9203 16 1 10.5175 6.2930 -1.2019 17 7 9.8071 4.2751 -1.2599 18 6 10.6172 3.9047 -2.3000 19 1 11.1427 4.6568 -2.8696 20 6 10.7637 2.5623 -2.6215 21 7 10.1236 1.6455 -1.9270 22 14 11.8681 2.0569 -4.0408 23 1 12.4685 3.2678 -4.6562 24 1 12.9481 1.1712 -3.5365 25 1 11.0662 1.3301 -5.0576 26 6 9.1801 5.9312 0.5141 27 6 9.6479 5.0343 1.6608 28 6 10.6414 6.1552 2.0169 29 6 9.6766 7.1318 1.3203 30 6 3.8825 2.8050 0.0000 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.7841 -0.5730 0.0005 37 1 6.2231 -0.2615 0.0000 38 1 7.1800 2.0033 -0.0078 39 1 7.7627 3.7434 0.0060 40 1 7.8577 5.7679 -2.2132 41 1 8.3402 7.3731 -1.5128 42 1 9.3354 3.5996 -0.7481 43 1 10.2257 0.7076 -2.1519 44 1 8.8870 4.8658 2.4228 45 1 10.1277 4.1137 1.3285 46 1 11.6041 6.0605 1.5144 47 1 10.7381 6.3278 3.0887 48 1 10.1792 7.8869 0.7160 49 1 8.9237 7.5528 1.9867 50 1 3.2260 3.6625 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078736029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:40 Heat of formation + Delta-G solvation = 9.924093 kcal Electronic energy + Delta-G solvation = -30569.649445 eV Core-core repulsion = 26563.970396 eV Total energy + Delta-G solvation = -4005.679050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.72453 -40.12579 -38.79428 -37.01918 -35.24743 -33.70144 -32.48307 -32.05532 -30.95149 -29.91999 -29.27247 -25.53381 -25.10294 -24.28486 -24.15485 -23.09448 -22.33883 -21.89815 -20.41843 -19.90045 -18.85078 -17.72455 -17.07126 -16.47581 -16.26141 -16.06382 -15.89002 -15.29264 -15.15978 -14.72109 -14.65588 -14.32803 -14.03463 -13.64391 -13.43310 -13.39269 -13.16296 -12.96136 -12.81166 -12.55632 -12.12156 -12.10857 -11.98525 -11.85531 -11.64789 -11.48949 -11.32841 -10.95739 -10.90917 -10.89723 -10.87448 -10.69529 -10.19008 -10.08988 -9.86516 -9.72378 -9.53612 -9.41873 -8.97688 -8.90996 -8.46218 -8.19808 -7.08499 -5.90340 -3.17945 0.94215 1.50335 2.98017 3.09290 3.37084 3.43859 3.45133 3.52684 4.01803 4.46583 4.66973 4.67509 4.75967 4.78561 4.92951 4.96502 5.00478 5.03601 5.13824 5.16541 5.22016 5.32481 5.37097 5.41829 5.47694 5.52197 5.59529 5.67658 5.76419 5.84683 5.90073 5.98888 6.00646 6.00690 6.02980 6.16401 6.24780 6.30304 6.35543 6.45907 6.50183 6.51443 6.61405 6.68423 6.71230 6.80064 6.95058 7.12460 7.35922 7.63998 7.91952 8.29379 8.55512 9.40511 9.94261 10.28512 11.32636 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009438 B = 0.003401 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.116904 B = 8230.796837 C =10312.951012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.316 6.316 4 C 0.114 3.886 5 C -0.187 4.187 6 C -0.083 4.083 7 C -0.108 4.108 8 C -0.094 4.094 9 C 0.561 3.439 10 O -0.547 6.547 11 N -0.690 5.690 12 C 0.138 3.862 13 H 0.091 0.909 14 C -0.185 4.185 15 C 0.190 3.810 16 H 0.065 0.935 17 N -0.700 5.700 18 C -0.239 4.239 19 H 0.074 0.926 20 C -0.009 4.009 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.127 4.127 27 C -0.128 4.128 28 C -0.134 4.134 29 C -0.106 4.106 30 C -0.095 4.095 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.407 0.593 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.379 0.621 43 H 0.256 0.744 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.184 -0.862 8.013 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.231 6.231 4 C 0.069 3.931 5 C -0.206 4.206 6 C -0.101 4.101 7 C -0.127 4.127 8 C -0.097 4.097 9 C 0.348 3.652 10 O -0.426 6.426 11 N -0.341 5.341 12 C 0.033 3.967 13 H 0.109 0.891 14 C -0.227 4.227 15 C 0.078 3.922 16 H 0.083 0.917 17 N -0.339 5.339 18 C -0.370 4.370 19 H 0.092 0.908 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.129 4.129 27 C -0.165 4.165 28 C -0.171 4.171 29 C -0.144 4.144 30 C -0.115 4.115 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.246 0.754 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.214 0.786 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.078 0.922 48 H 0.087 0.913 49 H 0.097 0.903 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.697 -0.089 7.844 14.084 hybrid contribution 0.753 -1.321 -0.768 1.704 sum -10.945 -1.410 7.076 13.109 Atomic orbital electron populations 1.21771 0.92823 1.02730 1.03571 1.22769 0.95815 0.82161 1.01402 1.86070 1.18894 1.29072 1.89023 1.18751 0.82333 0.93767 0.98270 1.21403 0.94509 0.97913 1.06787 1.20934 0.94089 0.97567 0.97496 1.21465 1.00558 0.91806 0.98901 1.19734 0.93194 0.93328 1.03475 1.18147 0.82410 0.88346 0.76309 1.90722 1.59732 1.41390 1.50787 1.45637 1.06106 1.09304 1.73084 1.21645 0.93313 0.83802 0.97972 0.89114 1.24276 1.01117 1.00187 0.97151 1.20890 0.94442 0.87568 0.89275 0.91671 1.42095 1.54674 0.99759 1.37411 1.19300 1.19482 0.91498 1.06750 0.90847 1.24700 1.00549 0.95709 0.99595 1.69608 1.46222 1.00150 1.42058 0.86100 0.79903 0.78209 0.81838 1.20564 1.21877 1.21880 1.23515 0.95002 0.98131 0.96299 1.22594 0.98451 0.98400 0.97102 1.22748 0.98083 0.96781 0.99528 1.22514 0.98526 0.95432 0.97962 1.20384 0.93991 0.95290 1.01827 0.90457 0.91531 0.91481 0.92005 0.92065 0.85392 0.84867 0.84346 0.75354 0.90892 0.90436 0.78598 0.93451 0.90871 0.90209 0.90058 0.92159 0.91311 0.90267 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.05 0.48 5.46 37.16 0.20 0.68 16 3 O -0.32 -4.07 10.13 -19.45 -0.20 -4.26 16 4 C 0.11 1.60 6.68 -39.28 -0.26 1.34 16 5 C -0.19 -2.37 9.03 -39.35 -0.36 -2.72 16 6 C -0.08 -1.14 10.03 -39.66 -0.40 -1.54 16 7 C -0.11 -1.72 9.54 -39.17 -0.37 -2.09 16 8 C -0.09 -1.59 5.87 -104.99 -0.62 -2.20 16 9 C 0.56 10.43 7.77 -12.32 -0.10 10.34 16 10 O -0.55 -11.38 15.99 5.32 0.09 -11.29 16 11 N -0.69 -12.30 4.88 -54.31 -0.26 -12.57 16 12 C 0.14 2.37 4.08 -67.48 -0.28 2.09 16 13 H 0.09 1.57 7.54 -51.93 -0.39 1.18 16 14 C -0.19 -3.34 7.68 -25.75 -0.20 -3.54 16 15 C 0.19 3.62 4.35 -67.48 -0.29 3.32 16 16 H 0.07 1.25 8.12 -51.93 -0.42 0.82 16 17 N -0.70 -16.00 4.76 -52.99 -0.25 -16.25 16 18 C -0.24 -6.21 9.98 -15.06 -0.15 -6.36 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -25.57 13.06 55.49 0.72 -24.85 16 22 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C -0.13 -2.02 0.76 -154.71 -0.12 -2.14 16 27 C -0.13 -1.97 7.18 -26.28 -0.19 -2.15 16 28 C -0.13 -1.80 8.08 -25.75 -0.21 -2.01 16 29 C -0.11 -1.40 7.84 -26.28 -0.21 -1.60 16 30 C -0.10 -1.52 9.53 -39.02 -0.37 -1.89 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 35 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 36 H 0.13 1.25 6.28 -52.49 -0.33 0.92 16 37 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.14 2.31 6.40 -52.49 -0.34 1.97 16 39 H 0.41 7.44 4.22 -40.82 -0.17 7.27 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.38 8.84 5.11 -40.82 -0.21 8.63 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.42 7.51 -51.93 -0.39 1.03 16 46 H 0.08 1.15 8.14 -51.92 -0.42 0.72 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.14 2.26 7.65 -52.48 -0.40 1.86 16 LS Contribution 403.10 15.07 6.07 6.07 Total: -1.00 -29.77 403.10 -10.12 -39.89 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -7.64 Total: 18.31 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.62 Total: -11.49 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.21 Total: -53.67 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.11 Total: -15.55 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.77 -10.12 -39.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078736029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.811 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds