Wall clock time and date at job start Wed Apr 1 2020 03:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47169 * 2 1 4 4 C 1.35906 * 117.00302 * 179.97438 * 3 2 1 5 5 C 1.38851 * 119.98211 * 0.02719 * 4 3 2 6 6 C 1.38247 * 120.23663 * 179.97438 * 5 4 3 7 7 C 1.38008 * 120.20827 * 359.78064 * 6 5 4 8 8 C 1.39561 * 119.96173 * 0.46975 * 7 6 5 9 9 C 1.47859 * 120.11582 * 179.79173 * 8 7 6 10 10 O 1.21552 * 120.00160 * 179.44986 * 9 8 7 11 11 N 1.34784 * 120.00013 * 359.72040 * 9 8 7 12 12 C 1.46499 * 119.99893 * 179.72934 * 11 9 8 13 13 H 1.08991 * 112.88719 * 26.83832 * 12 11 9 14 14 C 1.53955 * 113.65676 * 255.49407 * 12 11 9 15 15 C 1.53952 * 87.29427 * 270.26312 * 14 12 11 16 16 H 1.08999 * 113.66330 * 220.79478 * 15 14 12 17 17 N 1.46501 * 113.66139 * 89.73956 * 15 14 12 18 18 C 1.36940 * 119.99705 * 104.50483 * 17 15 14 19 19 H 1.07996 * 120.00229 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99675 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00270 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47200 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47280 * 119.99839 * 22 20 18 25 25 H 1.48503 * 109.47543 * 240.00102 * 22 20 18 26 26 C 1.52906 * 113.66158 * 158.31142 * 12 11 9 27 27 C 1.52913 * 121.13858 * 323.84519 * 26 12 11 28 28 C 1.53955 * 86.78283 * 209.38119 * 27 26 12 29 29 C 1.52912 * 121.13914 * 215.28521 * 26 12 11 30 30 C 1.38454 * 119.98828 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46907 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47495 * 300.00146 * 1 2 3 33 33 H 1.09002 * 109.46930 * 59.99666 * 1 2 3 34 34 H 1.08994 * 109.47024 * 240.00280 * 2 1 3 35 35 H 1.08997 * 109.46961 * 119.99853 * 2 1 3 36 36 H 1.07994 * 119.88372 * 359.96939 * 5 4 3 37 37 H 1.08006 * 119.89620 * 180.02562 * 6 5 4 38 38 H 1.08001 * 120.01332 * 180.23775 * 7 6 5 39 39 H 0.97005 * 119.99846 * 359.72723 * 11 9 8 40 40 H 1.08997 * 113.58538 * 24.86529 * 14 12 11 41 41 H 1.09001 * 113.57453 * 155.66172 * 14 12 11 42 42 H 0.96995 * 119.99831 * 284.50869 * 17 15 14 43 43 H 0.96993 * 120.00245 * 179.97438 * 21 20 18 44 44 H 1.08995 * 113.66578 * 323.85187 * 27 26 12 45 45 H 1.09002 * 113.66302 * 94.90976 * 27 26 12 46 46 H 1.09008 * 113.58018 * 270.13298 * 28 27 26 47 47 H 1.08992 * 113.57954 * 139.34343 * 28 27 26 48 48 H 1.08997 * 113.66355 * 265.09722 * 29 26 12 49 49 H 1.09002 * 113.65946 * 36.15228 * 29 26 12 50 50 H 1.08003 * 120.10362 * 0.04242 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1992 0.4240 0.0005 6 6 5.5705 0.5991 0.0005 7 6 6.1083 1.8702 -0.0040 8 6 5.2663 2.9832 0.0013 9 6 5.8388 4.3465 0.0012 10 8 5.1036 5.3144 -0.0043 11 7 7.1759 4.5159 0.0016 12 6 7.7431 5.8666 -0.0045 13 1 7.0807 6.6065 0.4445 14 6 8.3092 6.2927 -1.3714 15 6 9.6530 5.6919 -0.9203 16 1 10.5175 6.2930 -1.2019 17 7 9.8071 4.2751 -1.2599 18 6 10.6172 3.9047 -2.3000 19 1 11.1427 4.6568 -2.8696 20 6 10.7637 2.5623 -2.6215 21 7 10.1236 1.6455 -1.9270 22 14 11.8681 2.0569 -4.0408 23 1 12.4685 3.2678 -4.6562 24 1 12.9481 1.1712 -3.5365 25 1 11.0662 1.3301 -5.0576 26 6 9.1801 5.9312 0.5141 27 6 9.6479 5.0343 1.6608 28 6 10.6414 6.1552 2.0169 29 6 9.6766 7.1318 1.3203 30 6 3.8825 2.8050 0.0000 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.7841 -0.5730 0.0005 37 1 6.2231 -0.2615 0.0000 38 1 7.1800 2.0033 -0.0078 39 1 7.7627 3.7434 0.0060 40 1 7.8577 5.7679 -2.2132 41 1 8.3402 7.3731 -1.5128 42 1 9.3354 3.5996 -0.7481 43 1 10.2257 0.7076 -2.1519 44 1 8.8870 4.8658 2.4228 45 1 10.1277 4.1137 1.3285 46 1 11.6041 6.0605 1.5144 47 1 10.7381 6.3278 3.0887 48 1 10.1792 7.8869 0.7160 49 1 8.9237 7.5528 1.9867 50 1 3.2260 3.6625 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078736029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:39 Heat of formation + Delta-G solvation = -6.119439 kcal Electronic energy + Delta-G solvation = -30570.345145 eV Core-core repulsion = 26563.970396 eV Total energy + Delta-G solvation = -4006.374749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.09343 -41.24630 -40.09042 -38.16734 -36.66246 -35.43704 -33.96667 -32.90648 -32.24250 -31.57312 -30.40753 -26.78431 -26.63815 -25.61580 -25.40851 -24.33735 -23.47768 -23.20326 -21.69027 -21.23385 -20.15315 -19.24453 -18.67684 -17.71800 -17.32434 -17.07478 -17.03440 -16.71944 -16.48906 -16.22149 -16.02456 -15.87698 -15.50128 -14.90962 -14.81466 -14.59230 -14.40657 -14.29547 -13.86712 -13.44204 -13.40013 -13.26433 -13.11287 -13.06172 -12.93162 -12.83852 -12.69648 -12.61846 -12.52441 -12.12254 -11.94520 -11.91606 -11.81709 -11.66905 -11.32531 -11.21901 -10.98843 -10.86174 -10.64979 -10.18882 -9.86598 -9.31506 -8.97435 -7.93138 -5.19664 -0.27571 0.34273 1.48154 1.50219 1.58001 1.74234 1.91075 2.31656 2.56888 2.77620 3.38676 3.39592 3.53914 3.70627 3.73913 3.81934 3.95645 4.00277 4.02463 4.07596 4.09492 4.12937 4.20401 4.26068 4.29871 4.37805 4.45259 4.58064 4.66509 4.77500 4.80097 4.87180 4.90659 4.92449 4.95376 4.99857 5.11686 5.12018 5.14758 5.20540 5.22883 5.25665 5.27743 5.36402 5.52626 5.57599 5.58723 5.62597 5.69602 6.30281 6.37451 6.46224 7.08870 7.37262 8.08430 8.33728 9.29673 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009438 B = 0.003401 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.116904 B = 8230.796837 C =10312.951012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.331 6.331 4 C 0.117 3.883 5 C -0.172 4.172 6 C -0.081 4.081 7 C -0.121 4.121 8 C -0.110 4.110 9 C 0.557 3.443 10 O -0.576 6.576 11 N -0.688 5.688 12 C 0.135 3.865 13 H 0.094 0.906 14 C -0.179 4.179 15 C 0.177 3.823 16 H 0.066 0.934 17 N -0.708 5.708 18 C -0.242 4.242 19 H 0.073 0.927 20 C -0.062 4.062 21 N -0.956 5.956 22 Si 0.965 3.035 23 H -0.273 1.273 24 H -0.293 1.293 25 H -0.298 1.298 26 C -0.117 4.117 27 C -0.130 4.130 28 C -0.126 4.126 29 C -0.093 4.093 30 C -0.112 4.112 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.123 0.877 39 H 0.405 0.595 40 H 0.040 0.960 41 H 0.104 0.896 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.083 0.917 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.099 0.901 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.545 -1.291 8.816 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.245 6.245 4 C 0.072 3.928 5 C -0.191 4.191 6 C -0.099 4.099 7 C -0.140 4.140 8 C -0.114 4.114 9 C 0.345 3.655 10 O -0.458 6.458 11 N -0.338 5.338 12 C 0.030 3.970 13 H 0.112 0.888 14 C -0.221 4.221 15 C 0.067 3.933 16 H 0.084 0.916 17 N -0.348 5.348 18 C -0.374 4.374 19 H 0.091 0.909 20 C -0.256 4.256 21 N -0.605 5.605 22 Si 0.795 3.205 23 H -0.197 1.197 24 H -0.221 1.221 25 H -0.225 1.225 26 C -0.119 4.119 27 C -0.168 4.168 28 C -0.163 4.163 29 C -0.131 4.131 30 C -0.131 4.131 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.183 0.817 37 H 0.172 0.828 38 H 0.141 0.859 39 H 0.243 0.757 40 H 0.059 0.941 41 H 0.122 0.878 42 H 0.208 0.792 43 H 0.061 0.939 44 H 0.102 0.898 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.100 0.900 49 H 0.118 0.882 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.051 -0.483 8.654 14.844 hybrid contribution 0.774 -1.216 -1.023 1.768 sum -11.277 -1.699 7.632 13.722 Atomic orbital electron populations 1.21814 0.91444 1.04284 1.03114 1.23169 0.97007 0.80441 1.02738 1.86079 1.17947 1.31838 1.88658 1.18777 0.83335 0.93362 0.97320 1.21735 0.93702 0.99130 1.04528 1.21203 0.95082 0.97152 0.96475 1.21405 0.99712 0.92713 1.00172 1.19627 0.93781 0.92586 1.05359 1.18500 0.82410 0.88954 0.75628 1.90684 1.60256 1.42413 1.52420 1.45688 1.05958 1.09576 1.72584 1.21738 0.94180 0.83526 0.97567 0.88769 1.24225 1.00117 1.01353 0.96387 1.21074 0.94767 0.85623 0.91878 0.91637 1.42165 1.54343 1.01407 1.36861 1.19576 1.19112 0.91583 1.07099 0.90945 1.25352 1.02318 0.95983 1.01931 1.69727 1.47532 0.99991 1.43288 0.85207 0.78214 0.77765 0.79302 1.19730 1.22069 1.22543 1.23405 0.93174 1.00500 0.94851 1.22600 0.99324 0.97696 0.97137 1.22706 0.97139 0.95388 1.01077 1.22553 0.98573 0.94529 0.97444 1.20373 0.93512 0.96184 1.03056 0.87853 0.91852 0.92118 0.90837 0.90392 0.81724 0.82781 0.85896 0.75665 0.94136 0.87783 0.79158 0.93903 0.89843 0.93141 0.90915 0.89725 0.89964 0.88223 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.04 0.62 5.46 71.98 0.39 1.01 16 3 O -0.33 -8.10 10.13 -92.50 -0.94 -9.03 16 4 C 0.12 3.22 6.68 22.47 0.15 3.37 16 5 C -0.17 -4.00 9.03 22.42 0.20 -3.80 16 6 C -0.08 -2.15 10.03 22.22 0.22 -1.93 16 7 C -0.12 -3.95 9.54 22.53 0.21 -3.73 16 8 C -0.11 -3.88 5.87 -20.10 -0.12 -3.99 16 9 C 0.56 21.68 7.77 86.79 0.67 22.35 16 10 O -0.58 -24.93 15.99 -3.88 -0.06 -24.99 16 11 N -0.69 -25.53 4.88 -444.01 -2.17 -27.70 16 12 C 0.13 4.66 4.08 45.28 0.18 4.84 16 13 H 0.09 3.21 7.54 -2.39 -0.02 3.19 16 14 C -0.18 -6.50 7.68 31.23 0.24 -6.26 16 15 C 0.18 6.76 4.35 45.28 0.20 6.95 16 16 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 17 N -0.71 -33.23 4.76 -321.56 -1.53 -34.76 16 18 C -0.24 -12.76 9.98 84.03 0.84 -11.92 16 19 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 20 C -0.06 -3.38 5.50 84.86 0.47 -2.92 16 21 N -0.96 -53.56 13.06 21.65 0.28 -53.27 16 22 Si 0.96 44.62 29.55 68.60 2.03 46.65 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 26 C -0.12 -3.63 0.76 -52.31 -0.04 -3.67 16 27 C -0.13 -3.92 7.18 30.89 0.22 -3.70 16 28 C -0.13 -3.10 8.08 31.23 0.25 -2.85 16 29 C -0.09 -2.19 7.84 30.88 0.24 -1.95 16 30 C -0.11 -3.66 9.53 22.63 0.22 -3.44 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.96 7.66 -2.39 -0.02 0.95 16 35 H 0.08 0.94 7.66 -2.39 -0.02 0.93 16 36 H 0.17 2.57 6.28 -2.91 -0.02 2.56 16 37 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.12 4.36 6.40 -2.91 -0.02 4.34 16 39 H 0.40 15.60 4.22 -92.70 -0.39 15.21 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.37 18.15 5.11 -92.71 -0.47 17.68 16 43 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.05 1.83 7.51 -2.39 -0.02 1.81 16 46 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 47 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 50 H 0.13 4.42 7.65 -2.91 -0.02 4.40 16 Total: -1.00 -65.91 403.10 3.01 -62.91 By element: Atomic # 1 Polarization: 52.76 SS G_CDS: 0.09 Total: 52.85 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 5.30 Total: -12.65 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -3.41 Total: -115.73 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.00 Total: -34.02 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -65.91 3.01 -62.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078736029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.787 kcal (2) G-P(sol) polarization free energy of solvation -65.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds