Wall clock time and date at job start Wed Apr 1 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42908 * 109.46958 * 2 1 4 4 C 1.35657 * 116.99745 * 179.97438 * 3 2 1 5 5 C 1.38711 * 120.15279 * 359.97438 * 4 3 2 6 6 C 1.38052 * 120.08270 * 180.02562 * 5 4 3 7 7 C 1.38544 * 120.39387 * 359.97438 * 6 5 4 8 8 C 1.37791 * 120.29922 * 359.78809 * 7 6 5 9 9 C 1.39711 * 119.90668 * 0.46393 * 8 7 6 10 10 C 1.47541 * 120.19167 * 179.78736 * 9 8 7 11 11 O 1.21585 * 119.99892 * 179.72485 * 10 9 8 12 12 N 1.34775 * 119.99886 * 359.72968 * 10 9 8 13 13 C 1.46497 * 119.99980 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.88504 * 336.33910 * 13 12 10 15 15 C 1.53948 * 113.75077 * 107.76606 * 13 12 10 16 16 C 1.53957 * 87.29686 * 139.21609 * 15 13 12 17 17 H 1.08997 * 113.66354 * 220.80031 * 16 15 13 18 18 N 1.46492 * 113.65902 * 89.73656 * 16 15 13 19 19 C 1.36945 * 119.99826 * 107.81807 * 18 16 15 20 20 H 1.08001 * 119.99727 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00195 * 179.97438 * 19 18 16 22 22 N 1.31613 * 119.99902 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99995 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.46997 * 89.99708 * 23 21 19 25 25 H 1.48497 * 109.46830 * 209.99886 * 23 21 19 26 26 H 1.48498 * 109.46826 * 329.99531 * 23 21 19 27 27 C 1.52909 * 113.66081 * 204.99902 * 13 12 10 28 28 C 1.52910 * 121.13680 * 346.24908 * 27 13 12 29 29 C 1.53949 * 86.78077 * 100.82535 * 28 27 13 30 30 C 1.52913 * 121.13887 * 94.81756 * 27 13 12 31 31 H 1.09003 * 109.47127 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47080 * 299.99879 * 1 2 3 33 33 H 1.09000 * 109.47627 * 59.99757 * 1 2 3 34 34 H 1.08998 * 109.47084 * 240.00677 * 2 1 3 35 35 H 1.09000 * 109.47627 * 120.00243 * 2 1 3 36 36 H 1.07992 * 119.95367 * 0.04130 * 5 4 3 37 37 H 1.07999 * 119.79966 * 179.97438 * 6 5 4 38 38 H 1.07994 * 119.85183 * 180.02562 * 7 6 5 39 39 H 1.07995 * 120.04728 * 180.25449 * 8 7 6 40 40 H 0.96999 * 120.00279 * 359.97438 * 12 10 9 41 41 H 1.09001 * 113.57503 * 24.61289 * 15 13 12 42 42 H 1.08996 * 113.57974 * 253.82213 * 15 13 12 43 43 H 0.97003 * 120.00647 * 287.81186 * 18 16 15 44 44 H 0.97009 * 120.00173 * 180.02562 * 22 21 19 45 45 H 1.09006 * 113.66074 * 215.29190 * 28 27 13 46 46 H 1.08994 * 113.66448 * 346.35155 * 28 27 13 47 47 H 1.09009 * 113.57633 * 270.12923 * 29 28 27 48 48 H 1.08992 * 113.65542 * 139.35069 * 29 28 27 49 49 H 1.08992 * 113.66210 * 13.64580 * 30 27 13 50 50 H 1.08991 * 113.66466 * 144.61413 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3511 1.5251 0.0005 5 6 4.1990 0.4273 0.0016 6 6 5.5674 0.6098 0.0027 7 6 6.1042 1.8870 0.0022 8 6 5.2768 2.9889 -0.0038 9 6 3.8901 2.8187 0.0004 10 6 2.9983 3.9941 -0.0012 11 8 1.7920 3.8419 -0.0026 12 7 3.5208 5.2364 -0.0013 13 6 2.6354 6.4035 -0.0023 14 1 1.6467 6.1851 -0.4060 15 6 2.6022 7.1578 1.3393 16 6 2.6082 8.4627 0.5224 17 1 3.2459 9.2398 0.9439 18 7 1.2691 8.9470 0.1782 19 6 0.7608 10.0555 0.8011 20 1 1.3470 10.5725 1.5464 21 6 -0.5078 10.5147 0.4745 22 7 -1.2219 9.8850 -0.4341 23 14 -1.2009 12.0273 1.3237 24 1 -0.8334 13.2409 0.5508 25 1 -2.6799 11.9180 1.4001 26 1 -0.6403 12.1253 2.6953 27 6 3.2761 7.6594 -0.5942 28 6 4.7843 7.7401 -0.8328 29 6 4.4783 7.4453 -2.3125 30 6 3.0765 8.0313 -2.0639 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8932 -0.5137 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.7881 -0.5714 0.0013 37 1 6.2233 -0.2482 0.0039 38 1 7.1760 2.0197 0.0026 39 1 5.6996 3.9826 -0.0083 40 1 4.4832 5.3578 0.0001 41 1 3.4997 7.0161 1.9414 42 1 1.6835 7.0015 1.9047 43 1 0.7425 8.4825 -0.4911 44 1 -2.1084 10.2061 -0.6626 45 1 5.2018 8.7324 -0.6617 46 1 5.3486 6.9503 -0.3370 47 1 4.4701 6.3820 -2.5526 48 1 5.0787 8.0312 -3.0083 49 1 2.2767 7.4741 -2.5514 50 1 3.0125 9.1052 -2.2385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078796448.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:45 Heat of formation + Delta-G solvation = 11.743512 kcal Electronic energy + Delta-G solvation = -30492.368601 eV Core-core repulsion = 26486.768448 eV Total energy + Delta-G solvation = -4005.600154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.84755 -40.23910 -38.44073 -37.50508 -35.01659 -33.95128 -32.53813 -32.15466 -31.15188 -29.79757 -29.39995 -25.50922 -24.98734 -24.36930 -24.12719 -23.49881 -22.33420 -21.84157 -20.25171 -20.07646 -18.95765 -17.85336 -17.27877 -16.82434 -16.31513 -16.27491 -15.50780 -15.28336 -15.23840 -14.91731 -14.72107 -14.49417 -14.06153 -13.70905 -13.52923 -13.37122 -12.97703 -12.77288 -12.63404 -12.42521 -12.22174 -12.20345 -12.03425 -11.87454 -11.81818 -11.62906 -11.45884 -11.25214 -10.96639 -10.90437 -10.79433 -10.59341 -10.18224 -10.02439 -9.83253 -9.67280 -9.52046 -9.31991 -9.30894 -8.79070 -8.57608 -8.38690 -6.93155 -5.74320 -3.03574 0.68605 1.14289 2.94800 2.98842 3.38769 3.45638 3.50769 3.52783 3.76860 4.45660 4.46701 4.57136 4.70671 4.75560 4.78309 4.78920 4.91800 4.96318 4.99001 5.01646 5.07841 5.17662 5.21535 5.37596 5.47666 5.51001 5.54470 5.64235 5.68426 5.80839 5.86392 5.95636 5.95900 5.99430 6.05574 6.08866 6.10119 6.13942 6.15107 6.32445 6.42493 6.46673 6.54402 6.70996 6.76953 6.83096 6.91498 7.15606 7.22833 7.73353 7.81501 8.43936 8.53759 9.54892 10.12490 10.46933 11.47762 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.002809 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.226409 B = 9967.043423 C =11427.711017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.276 6.276 4 C 0.186 3.814 5 C -0.223 4.223 6 C -0.057 4.057 7 C -0.169 4.169 8 C -0.048 4.048 9 C -0.168 4.168 10 C 0.553 3.447 11 O -0.515 6.515 12 N -0.715 5.715 13 C 0.156 3.844 14 H 0.115 0.885 15 C -0.183 4.183 16 C 0.186 3.814 17 H 0.067 0.933 18 N -0.701 5.701 19 C -0.242 4.242 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.129 4.129 28 C -0.109 4.109 29 C -0.142 4.142 30 C -0.113 4.113 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.392 0.608 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.781 -20.655 -1.110 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.187 6.187 4 C 0.138 3.862 5 C -0.242 4.242 6 C -0.075 4.075 7 C -0.188 4.188 8 C -0.067 4.067 9 C -0.172 4.172 10 C 0.340 3.660 11 O -0.391 6.391 12 N -0.367 5.367 13 C 0.052 3.948 14 H 0.133 0.867 15 C -0.226 4.226 16 C 0.073 3.927 17 H 0.085 0.915 18 N -0.338 5.338 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.132 4.132 28 C -0.147 4.147 29 C -0.179 4.179 30 C -0.151 4.151 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.608 -20.437 -1.020 25.736 hybrid contribution 0.028 0.322 0.267 0.419 sum 15.636 -20.116 -0.753 25.489 Atomic orbital electron populations 1.21744 0.92370 1.02445 1.04284 1.22885 0.96579 0.82192 1.00975 1.86427 1.17610 1.28376 1.86309 1.19052 0.83285 0.92630 0.91256 1.21247 0.94390 0.98002 1.10542 1.21090 0.94243 0.97493 0.94700 1.20965 1.00072 0.92182 1.05547 1.21183 0.91272 0.99466 0.94794 1.19527 0.93687 0.91670 1.12322 1.18000 0.87969 0.82835 0.77205 1.90848 1.14298 1.85744 1.48229 1.46000 1.10012 1.05437 1.75233 1.22246 0.94163 0.80928 0.97481 0.86704 1.24320 1.01477 1.00208 0.96563 1.20782 0.88233 0.91956 0.91713 0.91475 1.42096 1.12398 1.32037 1.47304 1.19259 0.98323 1.03072 1.16699 0.91043 1.24757 0.97158 0.99436 0.99384 1.69670 1.11858 1.41500 1.34655 0.86189 0.78211 0.82820 0.78954 1.21740 1.21800 1.20743 1.23524 0.95859 0.97158 0.96612 1.22505 0.94554 1.01400 0.96235 1.22870 0.98271 1.00570 0.96197 1.22535 0.95937 1.01430 0.95177 0.90577 0.91201 0.91198 0.92137 0.92134 0.84976 0.85465 0.85330 0.85116 0.77187 0.91335 0.90936 0.77890 0.93440 0.89609 0.92505 0.90901 0.92004 0.91795 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.15 0.38 -1.00 16 2 C 0.05 0.47 5.46 37.15 0.20 0.67 16 3 O -0.28 -3.98 8.21 -40.55 -0.33 -4.31 16 4 C 0.19 2.42 6.70 -38.69 -0.26 2.16 16 5 C -0.22 -2.12 9.03 -39.47 -0.36 -2.47 16 6 C -0.06 -0.45 10.03 -39.54 -0.40 -0.84 16 7 C -0.17 -1.36 10.02 -39.63 -0.40 -1.76 16 8 C -0.05 -0.48 9.54 -39.19 -0.37 -0.85 16 9 C -0.17 -2.25 5.89 -104.84 -0.62 -2.87 16 10 C 0.55 9.19 7.76 -12.47 -0.10 9.09 16 11 O -0.52 -10.82 14.76 -16.59 -0.24 -11.06 16 12 N -0.71 -10.42 5.23 -54.41 -0.28 -10.71 16 13 C 0.16 2.72 4.03 -67.48 -0.27 2.45 16 14 H 0.12 2.43 7.46 -51.93 -0.39 2.05 16 15 C -0.18 -3.37 7.69 -25.75 -0.20 -3.57 16 16 C 0.19 3.70 4.36 -67.48 -0.29 3.41 16 17 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 18 N -0.70 -17.56 5.09 -52.99 -0.27 -17.83 16 19 C -0.24 -6.72 9.97 -15.05 -0.15 -6.87 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C -0.13 -2.10 0.92 -154.71 -0.14 -2.24 16 28 C -0.11 -1.37 7.47 -26.28 -0.20 -1.57 16 29 C -0.14 -1.81 8.08 -25.75 -0.21 -2.02 16 30 C -0.11 -1.86 7.49 -26.28 -0.20 -2.06 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 35 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 36 H 0.13 0.95 6.30 -52.49 -0.33 0.61 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.13 0.99 6.40 -52.49 -0.34 0.66 16 40 H 0.39 4.50 4.76 -40.82 -0.19 4.31 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.39 10.45 7.81 -40.82 -0.32 10.13 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.06 0.59 6.42 -51.93 -0.33 0.26 16 47 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 403.69 15.07 6.08 6.08 Total: -1.00 -34.09 403.69 -10.75 -44.84 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -7.74 Total: 13.82 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -3.67 Total: -10.75 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.17 Total: -56.15 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.58 Total: -15.37 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.09 -10.75 -44.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078796448.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.579 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds