Wall clock time and date at job start Wed Apr 1 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42908 * 109.46958 * 2 1 4 4 C 1.35657 * 116.99745 * 179.97438 * 3 2 1 5 5 C 1.38711 * 120.15279 * 359.97438 * 4 3 2 6 6 C 1.38052 * 120.08270 * 180.02562 * 5 4 3 7 7 C 1.38544 * 120.39387 * 359.97438 * 6 5 4 8 8 C 1.37791 * 120.29922 * 359.78809 * 7 6 5 9 9 C 1.39711 * 119.90668 * 0.46393 * 8 7 6 10 10 C 1.47541 * 120.19167 * 179.78736 * 9 8 7 11 11 O 1.21585 * 119.99892 * 179.72485 * 10 9 8 12 12 N 1.34775 * 119.99886 * 359.72968 * 10 9 8 13 13 C 1.46497 * 119.99980 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.88504 * 336.33910 * 13 12 10 15 15 C 1.53948 * 113.75077 * 107.76606 * 13 12 10 16 16 C 1.53957 * 87.29686 * 139.21609 * 15 13 12 17 17 H 1.08997 * 113.66354 * 220.80031 * 16 15 13 18 18 N 1.46492 * 113.65902 * 89.73656 * 16 15 13 19 19 C 1.36945 * 119.99826 * 107.81807 * 18 16 15 20 20 H 1.08001 * 119.99727 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00195 * 179.97438 * 19 18 16 22 22 N 1.31613 * 119.99902 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99995 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.46997 * 89.99708 * 23 21 19 25 25 H 1.48497 * 109.46830 * 209.99886 * 23 21 19 26 26 H 1.48498 * 109.46826 * 329.99531 * 23 21 19 27 27 C 1.52909 * 113.66081 * 204.99902 * 13 12 10 28 28 C 1.52910 * 121.13680 * 346.24908 * 27 13 12 29 29 C 1.53949 * 86.78077 * 100.82535 * 28 27 13 30 30 C 1.52913 * 121.13887 * 94.81756 * 27 13 12 31 31 H 1.09003 * 109.47127 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47080 * 299.99879 * 1 2 3 33 33 H 1.09000 * 109.47627 * 59.99757 * 1 2 3 34 34 H 1.08998 * 109.47084 * 240.00677 * 2 1 3 35 35 H 1.09000 * 109.47627 * 120.00243 * 2 1 3 36 36 H 1.07992 * 119.95367 * 0.04130 * 5 4 3 37 37 H 1.07999 * 119.79966 * 179.97438 * 6 5 4 38 38 H 1.07994 * 119.85183 * 180.02562 * 7 6 5 39 39 H 1.07995 * 120.04728 * 180.25449 * 8 7 6 40 40 H 0.96999 * 120.00279 * 359.97438 * 12 10 9 41 41 H 1.09001 * 113.57503 * 24.61289 * 15 13 12 42 42 H 1.08996 * 113.57974 * 253.82213 * 15 13 12 43 43 H 0.97003 * 120.00647 * 287.81186 * 18 16 15 44 44 H 0.97009 * 120.00173 * 180.02562 * 22 21 19 45 45 H 1.09006 * 113.66074 * 215.29190 * 28 27 13 46 46 H 1.08994 * 113.66448 * 346.35155 * 28 27 13 47 47 H 1.09009 * 113.57633 * 270.12923 * 29 28 27 48 48 H 1.08992 * 113.65542 * 139.35069 * 29 28 27 49 49 H 1.08992 * 113.66210 * 13.64580 * 30 27 13 50 50 H 1.08991 * 113.66466 * 144.61413 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3511 1.5251 0.0005 5 6 4.1990 0.4273 0.0016 6 6 5.5674 0.6098 0.0027 7 6 6.1042 1.8870 0.0022 8 6 5.2768 2.9889 -0.0038 9 6 3.8901 2.8187 0.0004 10 6 2.9983 3.9941 -0.0012 11 8 1.7920 3.8419 -0.0026 12 7 3.5208 5.2364 -0.0013 13 6 2.6354 6.4035 -0.0023 14 1 1.6467 6.1851 -0.4060 15 6 2.6022 7.1578 1.3393 16 6 2.6082 8.4627 0.5224 17 1 3.2459 9.2398 0.9439 18 7 1.2691 8.9470 0.1782 19 6 0.7608 10.0555 0.8011 20 1 1.3470 10.5725 1.5464 21 6 -0.5078 10.5147 0.4745 22 7 -1.2219 9.8850 -0.4341 23 14 -1.2009 12.0273 1.3237 24 1 -0.8334 13.2409 0.5508 25 1 -2.6799 11.9180 1.4001 26 1 -0.6403 12.1253 2.6953 27 6 3.2761 7.6594 -0.5942 28 6 4.7843 7.7401 -0.8328 29 6 4.4783 7.4453 -2.3125 30 6 3.0765 8.0313 -2.0639 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8932 -0.5137 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.7881 -0.5714 0.0013 37 1 6.2233 -0.2482 0.0039 38 1 7.1760 2.0197 0.0026 39 1 5.6996 3.9826 -0.0083 40 1 4.4832 5.3578 0.0001 41 1 3.4997 7.0161 1.9414 42 1 1.6835 7.0015 1.9047 43 1 0.7425 8.4825 -0.4911 44 1 -2.1084 10.2061 -0.6626 45 1 5.2018 8.7324 -0.6617 46 1 5.3486 6.9503 -0.3370 47 1 4.4701 6.3820 -2.5526 48 1 5.0787 8.0312 -3.0083 49 1 2.2767 7.4741 -2.5514 50 1 3.0125 9.1052 -2.2385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078796448.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:44 Heat of formation + Delta-G solvation = -9.364033 kcal Electronic energy + Delta-G solvation = -30493.283893 eV Core-core repulsion = 26486.768448 eV Total energy + Delta-G solvation = -4006.515445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.06112 -41.27554 -39.63727 -38.33691 -36.56392 -35.52010 -34.19328 -32.93945 -32.21027 -31.24001 -30.49428 -26.77688 -26.53426 -25.48976 -25.22422 -24.96283 -23.62849 -22.58255 -21.49675 -21.41839 -19.99954 -19.33130 -18.81288 -18.01426 -17.44186 -17.12985 -16.84828 -16.54617 -16.33072 -16.19626 -15.70533 -15.67615 -15.62935 -15.12035 -14.59789 -14.37844 -14.33900 -14.16073 -13.94516 -13.42969 -13.33731 -13.29230 -13.14549 -12.97366 -12.91922 -12.89922 -12.78838 -12.56587 -12.51932 -12.17494 -12.00291 -11.98178 -11.78198 -11.69215 -11.35948 -11.22083 -10.98450 -10.73261 -10.64389 -10.12236 -9.85232 -9.21187 -8.99409 -7.94815 -5.24168 -0.11447 0.43171 1.45629 1.48239 1.56514 1.92564 2.16363 2.26529 2.54591 2.87600 3.36437 3.41486 3.50693 3.68599 3.78625 3.80501 3.92668 3.96346 3.99966 4.04877 4.16987 4.20809 4.21468 4.27283 4.33116 4.41547 4.49802 4.56940 4.62906 4.76281 4.79388 4.83518 4.86520 4.90507 4.96618 5.01770 5.10119 5.12223 5.14118 5.22356 5.23365 5.29074 5.35256 5.41447 5.48140 5.52107 5.58306 5.74698 5.80793 6.26691 6.43711 6.65644 7.31582 7.33324 8.08496 8.30924 9.28744 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.002809 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.226409 B = 9967.043423 C =11427.711017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 O -0.319 6.319 4 C 0.158 3.842 5 C -0.224 4.224 6 C -0.045 4.045 7 C -0.162 4.162 8 C -0.046 4.046 9 C -0.203 4.203 10 C 0.547 3.453 11 O -0.576 6.576 12 N -0.696 5.696 13 C 0.163 3.837 14 H 0.064 0.936 15 C -0.172 4.172 16 C 0.169 3.831 17 H 0.077 0.923 18 N -0.717 5.717 19 C -0.240 4.240 20 H 0.081 0.919 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.976 3.024 24 H -0.284 1.284 25 H -0.300 1.300 26 H -0.268 1.268 27 C -0.118 4.118 28 C -0.092 4.092 29 C -0.122 4.122 30 C -0.128 4.128 31 H 0.109 0.891 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.412 0.588 41 H 0.104 0.896 42 H 0.033 0.967 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.036 0.964 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.956 -22.109 -0.510 31.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.232 6.232 4 C 0.110 3.890 5 C -0.243 4.243 6 C -0.063 4.063 7 C -0.180 4.180 8 C -0.064 4.064 9 C -0.207 4.207 10 C 0.337 3.663 11 O -0.456 6.456 12 N -0.349 5.349 13 C 0.057 3.943 14 H 0.083 0.917 15 C -0.215 4.215 16 C 0.058 3.942 17 H 0.095 0.905 18 N -0.353 5.353 19 C -0.372 4.372 20 H 0.099 0.901 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.805 3.195 24 H -0.211 1.211 25 H -0.227 1.227 26 H -0.192 1.192 27 C -0.121 4.121 28 C -0.129 4.129 29 C -0.160 4.160 30 C -0.166 4.166 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.171 0.829 37 H 0.183 0.817 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.251 0.749 41 H 0.122 0.878 42 H 0.052 0.948 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.118 0.882 46 H 0.109 0.891 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.055 0.945 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 20.895 -21.898 -0.393 30.270 hybrid contribution -1.507 0.644 0.092 1.641 sum 19.388 -21.254 -0.302 28.770 Atomic orbital electron populations 1.21791 0.92750 1.03951 1.02317 1.23132 0.96399 0.80967 1.02733 1.86383 1.19086 1.30886 1.86855 1.19464 0.83256 0.93718 0.92563 1.21534 0.94984 0.97836 1.09938 1.21622 0.93810 0.98973 0.91921 1.21430 1.01637 0.91463 1.03474 1.21463 0.89575 1.01521 0.93854 1.19469 0.94802 0.90340 1.16071 1.18687 0.87804 0.84077 0.75757 1.90815 1.17112 1.86603 1.51092 1.45706 1.10479 1.04107 1.74621 1.21716 0.93019 0.82611 0.96906 0.91744 1.24207 1.01209 0.99332 0.96703 1.21073 0.86331 0.92758 0.94038 0.90532 1.42265 1.14425 1.31642 1.46968 1.19705 0.98341 1.03157 1.15964 0.90065 1.25622 0.97882 1.02827 1.00730 1.69855 1.11989 1.43529 1.36879 0.85103 0.76742 0.79237 0.78463 1.21097 1.22654 1.19237 1.23421 0.98973 0.94497 0.95163 1.22541 0.91086 1.03490 0.95794 1.22785 0.95009 1.01050 0.97130 1.22577 0.98149 1.00401 0.95486 0.87249 0.93168 0.93131 0.90208 0.90232 0.82895 0.81683 0.81679 0.82862 0.74865 0.87769 0.94755 0.79777 0.94151 0.88197 0.89089 0.90110 0.89753 0.94484 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 10.28 71.98 0.74 -2.20 16 2 C 0.04 0.82 5.46 71.98 0.39 1.21 16 3 O -0.32 -9.76 8.21 -68.80 -0.56 -10.32 16 4 C 0.16 4.09 6.70 22.84 0.15 4.24 16 5 C -0.22 -3.68 9.03 22.34 0.20 -3.48 16 6 C -0.05 -0.50 10.03 22.30 0.22 -0.27 16 7 C -0.16 -1.79 10.02 22.24 0.22 -1.56 16 8 C -0.05 -0.75 9.54 22.52 0.21 -0.53 16 9 C -0.20 -5.36 5.89 -20.01 -0.12 -5.47 16 10 C 0.55 18.97 7.76 86.70 0.67 19.65 16 11 O -0.58 -26.50 14.76 16.94 0.25 -26.25 16 12 N -0.70 -20.17 5.23 -444.33 -2.32 -22.50 16 13 C 0.16 5.96 4.03 45.28 0.18 6.14 16 14 H 0.06 3.05 7.46 -2.39 -0.02 3.03 16 15 C -0.17 -6.50 7.69 31.23 0.24 -6.26 16 16 C 0.17 6.83 4.36 45.29 0.20 7.02 16 17 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 18 N -0.72 -37.82 5.09 -321.55 -1.64 -39.46 16 19 C -0.24 -13.71 9.97 84.03 0.84 -12.87 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 21 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 22 N -0.97 -62.42 13.06 21.65 0.28 -62.14 16 23 Si 0.98 47.65 29.55 68.60 2.03 49.67 16 24 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.30 -14.89 7.11 99.48 0.71 -14.19 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 27 C -0.12 -3.83 0.92 -52.31 -0.05 -3.88 16 28 C -0.09 -1.97 7.47 30.88 0.23 -1.74 16 29 C -0.12 -2.81 8.08 31.23 0.25 -2.55 16 30 C -0.13 -4.31 7.49 30.89 0.23 -4.08 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.18 7.66 -2.39 -0.02 1.16 16 35 H 0.08 1.18 7.66 -2.39 -0.02 1.17 16 36 H 0.15 1.73 6.30 -2.91 -0.02 1.71 16 37 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 38 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 39 H 0.15 1.62 6.40 -2.91 -0.02 1.61 16 40 H 0.41 8.31 4.76 -92.71 -0.44 7.86 16 41 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.37 21.66 7.81 -92.71 -0.72 20.93 16 44 H 0.25 15.57 8.31 -92.70 -0.77 14.80 16 45 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.09 1.39 6.42 -2.39 -0.02 1.37 16 47 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 48 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -83.84 403.69 3.12 -80.72 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: -0.21 Total: 41.13 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 5.30 Total: -10.85 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -3.68 Total: -124.09 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.31 Total: -36.57 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.67 kcal Total: -83.84 3.12 -80.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078796448.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.352 kcal (2) G-P(sol) polarization free energy of solvation -83.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds