Wall clock time and date at job start Wed Apr 1 2020 03:20:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 O 1.21282 * 120.00115 * 2 1
4 4 N 1.34778 * 119.99910 * 180.02562 * 2 1 3
5 5 C 1.47871 * 125.74424 * 179.97438 * 4 2 1
6 6 C 1.54241 * 103.87662 * 204.56529 * 5 4 2
7 7 H 1.09002 * 109.88207 * 76.34738 * 6 5 4
8 8 C 1.51196 * 112.17037 * 199.25579 * 6 5 4
9 9 C 1.52867 * 111.24313 * 63.77899 * 8 6 5
10 10 N 1.47173 * 108.20730 * 58.58579 * 9 8 6
11 11 C 1.46896 * 111.00076 * 171.12638 * 10 9 8
12 12 C 1.50696 * 109.47386 * 292.82045 * 11 10 9
13 13 C 1.38294 * 119.93431 * 89.99943 * 12 11 10
14 14 C 1.38105 * 120.07468 * 179.97438 * 13 12 11
15 15 C 1.38879 * 119.92293 * 359.97438 * 14 13 12
16 16 O 1.35757 * 120.06460 * 179.97438 * 15 14 13
17 17 C 1.34828 * 117.00021 * 5.53392 * 16 15 14
18 18 H 1.07998 * 120.00041 * 354.94351 * 17 16 15
19 19 C 1.38659 * 119.99812 * 174.94135 * 17 16 15
20 20 N 1.31553 * 119.99890 * 0.02562 * 19 17 16
21 21 Si 1.86796 * 119.99845 * 180.02562 * 19 17 16
22 22 H 1.48504 * 109.46927 * 270.00173 * 21 19 17
23 23 H 1.48500 * 109.47341 * 29.99994 * 21 19 17
24 24 H 1.48496 * 109.47203 * 150.00145 * 21 19 17
25 25 C 1.38882 * 119.86740 * 0.25219 * 15 14 13
26 26 C 1.38098 * 119.92700 * 359.49807 * 25 15 14
27 27 C 1.46451 * 110.11559 * 294.45630 * 10 9 8
28 28 C 1.52990 * 111.04829 * 63.84822 * 27 10 9
29 29 H 1.09005 * 112.17688 * 73.91489 * 28 27 10
30 30 C 1.47352 * 125.74434 * 359.97086 * 4 2 1
31 31 H 1.09002 * 109.47097 * 239.99738 * 1 2 3
32 32 H 1.08996 * 109.47034 * 359.97438 * 1 2 3
33 33 H 1.08997 * 109.47697 * 119.99739 * 1 2 3
34 34 H 1.08995 * 110.55003 * 323.16400 * 5 4 2
35 35 H 1.09009 * 110.54740 * 85.82763 * 5 4 2
36 36 H 1.09000 * 109.12459 * 184.22887 * 8 6 5
37 37 H 1.09001 * 109.12101 * 303.32069 * 8 6 5
38 38 H 1.09000 * 109.71352 * 298.91530 * 9 8 6
39 39 H 1.08996 * 109.72119 * 178.26761 * 9 8 6
40 40 H 1.09001 * 109.47397 * 172.81325 * 11 10 9
41 41 H 1.09004 * 109.47166 * 52.82196 * 11 10 9
42 42 H 1.08001 * 119.96800 * 359.95296 * 13 12 11
43 43 H 1.07992 * 120.03825 * 179.97438 * 14 13 12
44 44 H 0.97001 * 120.00212 * 0.02562 * 20 19 17
45 45 H 1.08001 * 120.03651 * 179.72343 * 25 15 14
46 46 H 1.07999 * 119.96336 * 180.27765 * 26 25 15
47 47 H 1.09002 * 109.16106 * 184.25151 * 27 10 9
48 48 H 1.09001 * 109.16466 * 303.44589 * 27 10 9
49 49 H 1.09001 * 109.99134 * 61.43232 * 30 4 2
50 50 H 1.09003 * 109.99177 * 300.10988 * 30 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0503 0.0000
4 7 2.1809 -1.1672 -0.0005
5 6 3.6522 -1.3152 -0.0011
6 6 3.8837 -2.7072 -0.6240
7 1 3.7414 -2.6584 -1.7036
8 6 5.2560 -3.2547 -0.3032
9 6 5.4233 -3.4847 1.1988
10 7 4.3804 -4.4252 1.6390
11 6 4.6091 -4.8537 3.0254
12 6 5.8621 -5.6882 3.0930
13 6 7.0836 -5.0817 3.3227
14 6 8.2336 -5.8438 3.3858
15 6 8.1623 -7.2207 3.2188
16 8 9.2911 -7.9725 3.2798
17 6 10.4315 -7.3381 3.6186
18 1 10.4353 -6.2658 3.7471
19 6 11.5995 -8.0625 3.8021
20 7 11.5950 -9.3686 3.6451
21 14 13.1794 -7.1836 4.2722
22 1 13.9112 -6.7889 3.0418
23 1 12.8542 -5.9709 5.0652
24 1 14.0288 -8.0923 5.0833
25 6 6.9348 -7.8262 2.9836
26 6 5.7878 -7.0592 2.9268
27 6 3.0571 -3.8159 1.4895
28 6 2.7464 -3.5308 0.0188
29 1 2.5159 -4.4399 -0.5367
30 6 1.5755 -2.5107 -0.0005
31 1 -0.3633 -0.5139 0.8900
32 1 -0.3633 1.0276 0.0005
33 1 -0.3634 -0.5138 -0.8900
34 1 4.1144 -0.5407 -0.6130
35 1 4.0407 -1.2799 1.0168
36 1 5.3944 -4.2007 -0.8268
37 1 6.0115 -2.5460 -0.6424
38 1 5.3137 -2.5392 1.7299
39 1 6.4078 -3.9075 1.3987
40 1 3.7598 -5.4449 3.3678
41 1 4.7218 -3.9767 3.6628
42 1 7.1383 -4.0110 3.4526
43 1 9.1872 -5.3696 3.5648
44 1 10.7747 -9.8249 3.4006
45 1 6.8768 -8.8962 2.8489
46 1 4.8324 -7.5300 2.7484
47 1 2.3035 -4.4944 1.8894
48 1 3.0283 -2.8808 2.0490
49 1 0.9754 -2.6490 -0.8999
50 1 0.9543 -2.6395 0.8859
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001087854570.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:20:39
Heat of formation + Delta-G solvation = -35.411510 kcal
Electronic energy + Delta-G solvation = -29926.262675 eV
Core-core repulsion = 25918.617726 eV
Total energy + Delta-G solvation = -4007.644949 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.06115 -39.38663 -38.87610 -37.23517 -35.90099 -33.42263 -32.30891 -31.76401
-30.58331 -30.26000 -29.48737 -27.73003 -25.91731 -24.88281 -24.63017 -22.74911
-22.28289 -21.84307 -20.43853 -19.68716 -19.01717 -18.38463 -17.29722 -16.87665
-16.77051 -15.99646 -15.62401 -15.36901 -15.20530 -14.83988 -14.48872 -14.18568
-13.91815 -13.86694 -13.76793 -13.68428 -13.47453 -13.28370 -13.06225 -12.95900
-12.84943 -12.66449 -12.57790 -12.16491 -11.97188 -11.82163 -11.57105 -11.22280
-11.16875 -10.93663 -10.91703 -10.76728 -10.48141 -10.45651 -10.32911 -10.26561
-10.19813 -9.42243 -9.03950 -8.78522 -8.34779 -8.22833 -7.26736 -6.78769
-4.08002 2.13273 2.19639 2.28511 2.61093 3.22378 3.28114 3.41833
3.76332 3.99516 4.09879 4.20306 4.36311 4.47676 4.59074 4.70575
4.82598 4.91333 4.92417 4.93778 5.04267 5.06028 5.08915 5.13092
5.17880 5.23389 5.30196 5.31618 5.35372 5.41757 5.48400 5.58079
5.63621 5.68847 5.71034 5.77875 5.81006 5.82145 5.93154 6.05591
6.12287 6.13227 6.34478 6.61079 6.80113 6.94627 7.02723 7.12197
7.14918 7.23308 7.31889 7.54929 7.71098 7.79818 8.38421 8.90212
9.59301 10.65261
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.023345 B = 0.002007 C = 0.001921
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1199.113399 B =13950.285293 C =14571.856229
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.524 3.476
3 O -0.549 6.549
4 N -0.621 5.621
5 C 0.107 3.893
6 C -0.093 4.093
7 H 0.082 0.918
8 C -0.104 4.104
9 C 0.047 3.953
10 N -0.525 5.525
11 C 0.113 3.887
12 C -0.176 4.176
13 C -0.066 4.066
14 C -0.230 4.230
15 C 0.159 3.841
16 O -0.203 6.203
17 C -0.472 4.472
18 H 0.084 0.916
19 C 0.010 3.990
20 N -0.881 5.881
21 Si 1.098 2.902
22 H -0.281 1.281
23 H -0.283 1.283
24 H -0.275 1.275
25 C -0.197 4.197
26 C -0.052 4.052
27 C 0.057 3.943
28 C -0.086 4.086
29 H 0.106 0.894
30 C 0.101 3.899
31 H 0.087 0.913
32 H 0.091 0.909
33 H 0.087 0.913
34 H 0.078 0.922
35 H 0.070 0.930
36 H 0.079 0.921
37 H 0.068 0.932
38 H 0.031 0.969
39 H 0.091 0.909
40 H 0.074 0.926
41 H 0.032 0.968
42 H 0.103 0.897
43 H 0.127 0.873
44 H 0.282 0.718
45 H 0.114 0.886
46 H 0.112 0.888
47 H 0.075 0.925
48 H 0.031 0.969
49 H 0.072 0.928
50 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.777 13.112 -7.162 26.409
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.313 3.687
3 O -0.426 6.426
4 N -0.356 5.356
5 C -0.015 4.015
6 C -0.112 4.112
7 H 0.100 0.900
8 C -0.142 4.142
9 C -0.081 4.081
10 N -0.249 5.249
11 C -0.014 4.014
12 C -0.177 4.177
13 C -0.085 4.085
14 C -0.249 4.249
15 C 0.105 3.895
16 O -0.107 6.107
17 C -0.547 4.547
18 H 0.101 0.899
19 C -0.196 4.196
20 N -0.513 5.513
21 Si 0.922 3.078
22 H -0.207 1.207
23 H -0.208 1.208
24 H -0.200 1.200
25 C -0.216 4.216
26 C -0.070 4.070
27 C -0.071 4.071
28 C -0.105 4.105
29 H 0.124 0.876
30 C -0.022 4.022
31 H 0.105 0.895
32 H 0.110 0.890
33 H 0.106 0.894
34 H 0.096 0.904
35 H 0.088 0.912
36 H 0.098 0.902
37 H 0.087 0.913
38 H 0.050 0.950
39 H 0.109 0.891
40 H 0.092 0.908
41 H 0.050 0.950
42 H 0.121 0.879
43 H 0.144 0.856
44 H 0.092 0.908
45 H 0.132 0.868
46 H 0.130 0.870
47 H 0.093 0.907
48 H 0.049 0.951
49 H 0.090 0.910
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -19.806 12.825 -7.133 24.651
hybrid contribution -1.753 1.031 0.183 2.042
sum -21.559 13.856 -6.951 26.554
Atomic orbital electron populations
1.21896 0.91402 1.05387 1.04181 1.20514 0.90410 0.82026 0.75701
1.90736 1.70897 1.30681 1.50322 1.48738 1.07649 1.05791 1.73458
1.22358 0.80346 0.97471 1.01363 1.21720 0.95779 0.93445 1.00253
0.90000 1.21001 0.94828 1.01768 0.96574 1.22298 0.97125 0.93774
0.94865 1.62274 1.01242 1.38839 1.22498 1.20792 0.96324 0.96890
0.87389 1.19041 0.93542 0.93708 1.11420 1.20602 0.91985 0.97985
0.97896 1.21131 0.99006 0.93799 1.10983 1.19252 0.87203 0.90194
0.92835 1.83667 1.14120 1.36890 1.76015 1.22227 0.85850 0.94268
1.52400 0.89875 1.26533 1.00997 0.96256 0.95802 1.70542 1.32084
1.08032 1.40664 0.83058 0.73164 0.74458 0.77076 1.20688 1.20844
1.20042 1.20198 0.90394 0.99597 1.11424 1.20429 0.96661 0.92800
0.97157 1.22110 0.92188 0.97764 0.95027 1.22334 0.93699 0.97582
0.96915 0.87571 1.22435 0.96274 0.81622 1.01896 0.89464 0.88985
0.89442 0.90379 0.91229 0.90224 0.91304 0.95045 0.89116 0.90806
0.95011 0.87879 0.85569 0.90764 0.86769 0.87034 0.90705 0.95054
0.91017 0.90987
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.94 9.52 36.01 0.34 -0.60 16
2 C 0.52 5.27 7.96 -10.98 -0.09 5.18 16
3 O -0.55 -8.04 17.36 5.56 0.10 -7.94 16
4 N -0.62 -5.39 3.34 -169.69 -0.57 -5.96 16
5 C 0.11 1.00 5.80 -2.64 -0.02 0.98 16
6 C -0.09 -0.75 3.06 -90.13 -0.28 -1.02 16
7 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
8 C -0.10 -0.98 5.56 -27.71 -0.15 -1.13 16
9 C 0.05 0.53 5.08 -3.74 -0.02 0.51 16
10 N -0.52 -5.90 4.67 -236.31 -1.10 -7.00 16
11 C 0.11 1.41 5.10 -4.98 -0.03 1.38 16
12 C -0.18 -2.82 4.95 -104.58 -0.52 -3.34 16
13 C -0.07 -1.16 7.89 -39.61 -0.31 -1.47 16
14 C -0.23 -4.91 9.17 -39.39 -0.36 -5.28 16
15 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16
16 O -0.20 -5.67 9.16 0.03 0.00 -5.67 16
17 C -0.47 -13.17 9.49 30.89 0.29 -12.88 16
18 H 0.08 2.19 5.20 -52.49 -0.27 1.92 16
19 C 0.01 0.26 5.49 -17.52 -0.10 0.17 16
20 N -0.88 -26.20 13.70 55.48 0.76 -25.44 16
21 Si 1.10 23.64 29.92 -169.99 -5.09 18.55 16
22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16
23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16
24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16
25 C -0.20 -4.03 9.99 -39.39 -0.39 -4.43 16
26 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16
27 C 0.06 0.49 4.17 -4.07 -0.02 0.48 16
28 C -0.09 -0.61 3.75 -88.65 -0.33 -0.94 16
29 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16
30 C 0.10 0.59 5.80 -2.35 -0.01 0.58 16
31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16
33 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16
34 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16
35 H 0.07 0.72 5.76 -51.92 -0.30 0.42 16
36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16
37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
38 H 0.03 0.35 6.57 -51.93 -0.34 0.01 16
39 H 0.09 1.22 5.62 -51.93 -0.29 0.93 16
40 H 0.07 0.84 7.89 -51.93 -0.41 0.43 16
41 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16
42 H 0.10 1.57 7.87 -52.49 -0.41 1.16 16
43 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16
44 H 0.28 8.58 7.97 -40.82 -0.33 8.25 16
45 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16
46 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16
47 H 0.07 0.58 7.96 -51.93 -0.41 0.16 16
48 H 0.03 0.29 6.88 -51.93 -0.36 -0.06 16
49 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
50 H 0.07 0.35 7.77 -51.93 -0.40 -0.06 16
LS Contribution 391.06 15.07 5.89 5.89
Total: -1.00 -33.05 391.06 -10.32 -43.36
By element:
Atomic # 1 Polarization: 11.45 SS G_CDS: -7.68 Total: 3.76 kcal
Atomic # 6 Polarization: -16.93 SS G_CDS: -2.63 Total: -19.56 kcal
Atomic # 7 Polarization: -37.50 SS G_CDS: -0.91 Total: -38.41 kcal
Atomic # 8 Polarization: -13.70 SS G_CDS: 0.10 Total: -13.61 kcal
Atomic # 14 Polarization: 23.64 SS G_CDS: -5.09 Total: 18.55 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -33.05 -10.32 -43.36 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087854570.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.953 kcal
(2) G-P(sol) polarization free energy of solvation -33.048 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.095 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.365 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.412 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds