Wall clock time and date at job start Wed Apr 1 2020 03:20:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 O 1.21282 * 120.00115 * 2 1
4 4 N 1.34778 * 119.99910 * 180.02562 * 2 1 3
5 5 C 1.47871 * 125.74424 * 179.97438 * 4 2 1
6 6 C 1.54241 * 103.87662 * 204.56529 * 5 4 2
7 7 H 1.09002 * 109.88207 * 76.34738 * 6 5 4
8 8 C 1.51196 * 112.17037 * 199.25579 * 6 5 4
9 9 C 1.52867 * 111.24313 * 63.77899 * 8 6 5
10 10 N 1.47173 * 108.20730 * 58.58579 * 9 8 6
11 11 C 1.46896 * 111.00076 * 171.12638 * 10 9 8
12 12 C 1.50696 * 109.47386 * 292.82045 * 11 10 9
13 13 C 1.38294 * 119.93431 * 89.99943 * 12 11 10
14 14 C 1.38105 * 120.07468 * 179.97438 * 13 12 11
15 15 C 1.38879 * 119.92293 * 359.97438 * 14 13 12
16 16 O 1.35757 * 120.06460 * 179.97438 * 15 14 13
17 17 C 1.34828 * 117.00021 * 5.53392 * 16 15 14
18 18 H 1.07998 * 120.00041 * 354.94351 * 17 16 15
19 19 C 1.38659 * 119.99812 * 174.94135 * 17 16 15
20 20 N 1.31553 * 119.99890 * 0.02562 * 19 17 16
21 21 Si 1.86796 * 119.99845 * 180.02562 * 19 17 16
22 22 H 1.48504 * 109.46927 * 270.00173 * 21 19 17
23 23 H 1.48500 * 109.47341 * 29.99994 * 21 19 17
24 24 H 1.48496 * 109.47203 * 150.00145 * 21 19 17
25 25 C 1.38882 * 119.86740 * 0.25219 * 15 14 13
26 26 C 1.38098 * 119.92700 * 359.49807 * 25 15 14
27 27 C 1.46451 * 110.11559 * 294.45630 * 10 9 8
28 28 C 1.52990 * 111.04829 * 63.84822 * 27 10 9
29 29 H 1.09005 * 112.17688 * 73.91489 * 28 27 10
30 30 C 1.47352 * 125.74434 * 359.97086 * 4 2 1
31 31 H 1.09002 * 109.47097 * 239.99738 * 1 2 3
32 32 H 1.08996 * 109.47034 * 359.97438 * 1 2 3
33 33 H 1.08997 * 109.47697 * 119.99739 * 1 2 3
34 34 H 1.08995 * 110.55003 * 323.16400 * 5 4 2
35 35 H 1.09009 * 110.54740 * 85.82763 * 5 4 2
36 36 H 1.09000 * 109.12459 * 184.22887 * 8 6 5
37 37 H 1.09001 * 109.12101 * 303.32069 * 8 6 5
38 38 H 1.09000 * 109.71352 * 298.91530 * 9 8 6
39 39 H 1.08996 * 109.72119 * 178.26761 * 9 8 6
40 40 H 1.09001 * 109.47397 * 172.81325 * 11 10 9
41 41 H 1.09004 * 109.47166 * 52.82196 * 11 10 9
42 42 H 1.08001 * 119.96800 * 359.95296 * 13 12 11
43 43 H 1.07992 * 120.03825 * 179.97438 * 14 13 12
44 44 H 0.97001 * 120.00212 * 0.02562 * 20 19 17
45 45 H 1.08001 * 120.03651 * 179.72343 * 25 15 14
46 46 H 1.07999 * 119.96336 * 180.27765 * 26 25 15
47 47 H 1.09002 * 109.16106 * 184.25151 * 27 10 9
48 48 H 1.09001 * 109.16466 * 303.44589 * 27 10 9
49 49 H 1.09001 * 109.99134 * 61.43232 * 30 4 2
50 50 H 1.09003 * 109.99177 * 300.10988 * 30 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0503 0.0000
4 7 2.1809 -1.1672 -0.0005
5 6 3.6522 -1.3152 -0.0011
6 6 3.8837 -2.7072 -0.6240
7 1 3.7414 -2.6584 -1.7036
8 6 5.2560 -3.2547 -0.3032
9 6 5.4233 -3.4847 1.1988
10 7 4.3804 -4.4252 1.6390
11 6 4.6091 -4.8537 3.0254
12 6 5.8621 -5.6882 3.0930
13 6 7.0836 -5.0817 3.3227
14 6 8.2336 -5.8438 3.3858
15 6 8.1623 -7.2207 3.2188
16 8 9.2911 -7.9725 3.2798
17 6 10.4315 -7.3381 3.6186
18 1 10.4353 -6.2658 3.7471
19 6 11.5995 -8.0625 3.8021
20 7 11.5950 -9.3686 3.6451
21 14 13.1794 -7.1836 4.2722
22 1 13.9112 -6.7889 3.0418
23 1 12.8542 -5.9709 5.0652
24 1 14.0288 -8.0923 5.0833
25 6 6.9348 -7.8262 2.9836
26 6 5.7878 -7.0592 2.9268
27 6 3.0571 -3.8159 1.4895
28 6 2.7464 -3.5308 0.0188
29 1 2.5159 -4.4399 -0.5367
30 6 1.5755 -2.5107 -0.0005
31 1 -0.3633 -0.5139 0.8900
32 1 -0.3633 1.0276 0.0005
33 1 -0.3634 -0.5138 -0.8900
34 1 4.1144 -0.5407 -0.6130
35 1 4.0407 -1.2799 1.0168
36 1 5.3944 -4.2007 -0.8268
37 1 6.0115 -2.5460 -0.6424
38 1 5.3137 -2.5392 1.7299
39 1 6.4078 -3.9075 1.3987
40 1 3.7598 -5.4449 3.3678
41 1 4.7218 -3.9767 3.6628
42 1 7.1383 -4.0110 3.4526
43 1 9.1872 -5.3696 3.5648
44 1 10.7747 -9.8249 3.4006
45 1 6.8768 -8.8962 2.8489
46 1 4.8324 -7.5300 2.7484
47 1 2.3035 -4.4944 1.8894
48 1 3.0283 -2.8808 2.0490
49 1 0.9754 -2.6490 -0.8999
50 1 0.9543 -2.6395 0.8859
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001087854570.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:20:38
Heat of formation + Delta-G solvation = -57.061824 kcal
Electronic energy + Delta-G solvation = -29927.201503 eV
Core-core repulsion = 25918.617726 eV
Total energy + Delta-G solvation = -4008.583777 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.77980 -40.90082 -39.89786 -38.66408 -37.01050 -34.51179 -34.03940 -32.53376
-31.82547 -31.49359 -30.48955 -28.43007 -27.31667 -26.43380 -25.51688 -23.68694
-23.58992 -22.95858 -21.86513 -20.35566 -20.21923 -19.73381 -18.68458 -17.98694
-17.51931 -17.02015 -16.71266 -16.47865 -16.34911 -15.81210 -15.72830 -15.60050
-15.46102 -15.32800 -14.82008 -14.71977 -14.48180 -14.40809 -14.21613 -13.79972
-13.62941 -13.34870 -13.20474 -13.02922 -12.94958 -12.83650 -12.75748 -12.69164
-12.36540 -12.24808 -12.14259 -12.10645 -11.94184 -11.67916 -11.31719 -11.25685
-11.17119 -10.99102 -10.75315 -9.80890 -9.73420 -9.25571 -8.96819 -8.91847
-6.24092 0.54757 0.62977 1.47461 1.57747 1.60571 1.76117 1.98855
2.34768 2.70936 3.01630 3.23356 3.36308 3.38476 3.57932 3.73255
3.86701 3.96133 3.99471 4.10946 4.15719 4.22075 4.25555 4.34550
4.42537 4.44019 4.46326 4.55055 4.57541 4.60180 4.63899 4.67455
4.73147 4.77396 4.82658 4.89190 4.97239 5.00738 5.02354 5.07858
5.17551 5.20770 5.23450 5.25380 5.29312 5.38548 5.54002 5.72155
5.76926 6.05634 6.12103 6.21342 6.31672 6.50309 6.86606 7.09411
7.63615 8.50801
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.023345 B = 0.002007 C = 0.001921
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1199.113399 B =13950.285293 C =14571.856229
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.513 3.487
3 O -0.608 6.608
4 N -0.620 5.620
5 C 0.106 3.894
6 C -0.085 4.085
7 H 0.091 0.909
8 C -0.099 4.099
9 C 0.047 3.953
10 N -0.530 5.530
11 C 0.114 3.886
12 C -0.145 4.145
13 C -0.063 4.063
14 C -0.241 4.241
15 C 0.115 3.885
16 O -0.254 6.254
17 C -0.485 4.485
18 H 0.089 0.911
19 C -0.046 4.046
20 N -0.918 5.918
21 Si 1.146 2.854
22 H -0.264 1.264
23 H -0.261 1.261
24 H -0.273 1.273
25 C -0.204 4.204
26 C -0.044 4.044
27 C 0.058 3.942
28 C -0.081 4.081
29 H 0.121 0.879
30 C 0.102 3.898
31 H 0.110 0.890
32 H 0.087 0.913
33 H 0.112 0.888
34 H 0.059 0.941
35 H 0.058 0.942
36 H 0.073 0.927
37 H 0.069 0.931
38 H 0.033 0.967
39 H 0.065 0.935
40 H 0.099 0.901
41 H 0.040 0.960
42 H 0.129 0.871
43 H 0.112 0.888
44 H 0.260 0.740
45 H 0.114 0.886
46 H 0.152 0.848
47 H 0.095 0.905
48 H 0.026 0.974
49 H 0.097 0.903
50 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.802 14.542 -7.579 30.572
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.305 3.695
3 O -0.491 6.491
4 N -0.354 5.354
5 C -0.017 4.017
6 C -0.105 4.105
7 H 0.109 0.891
8 C -0.138 4.138
9 C -0.080 4.080
10 N -0.254 5.254
11 C -0.013 4.013
12 C -0.146 4.146
13 C -0.082 4.082
14 C -0.260 4.260
15 C 0.065 3.935
16 O -0.162 6.162
17 C -0.561 4.561
18 H 0.106 0.894
19 C -0.242 4.242
20 N -0.553 5.553
21 Si 0.962 3.038
22 H -0.189 1.189
23 H -0.185 1.185
24 H -0.197 1.197
25 C -0.224 4.224
26 C -0.062 4.062
27 C -0.069 4.069
28 C -0.100 4.100
29 H 0.139 0.861
30 C -0.020 4.020
31 H 0.128 0.872
32 H 0.106 0.894
33 H 0.131 0.869
34 H 0.077 0.923
35 H 0.076 0.924
36 H 0.091 0.909
37 H 0.087 0.913
38 H 0.051 0.949
39 H 0.083 0.917
40 H 0.117 0.883
41 H 0.058 0.942
42 H 0.147 0.853
43 H 0.130 0.870
44 H 0.069 0.931
45 H 0.132 0.868
46 H 0.169 0.831
47 H 0.113 0.887
48 H 0.044 0.956
49 H 0.115 0.885
50 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -23.916 14.256 -7.565 28.852
hybrid contribution -0.884 0.752 0.251 1.188
sum -24.800 15.008 -7.314 29.896
Atomic orbital electron populations
1.21910 0.87644 1.05939 1.06391 1.21398 0.92207 0.81390 0.74516
1.90708 1.72347 1.32809 1.53187 1.48865 1.07315 1.06839 1.72373
1.22255 0.81276 0.97775 1.00392 1.21632 0.95368 0.92688 1.00777
0.89113 1.20938 0.96041 1.01536 0.95259 1.22236 0.96039 0.93654
0.96110 1.62226 1.02534 1.39381 1.21293 1.20823 0.94882 0.96951
0.88632 1.19581 0.94616 0.93872 1.06559 1.20893 0.91336 0.99087
0.96849 1.21199 0.99975 0.93285 1.11582 1.19838 0.87335 0.91341
0.94957 1.83643 1.15154 1.38232 1.79142 1.22568 0.86592 0.94714
1.52248 0.89359 1.28350 1.04505 0.96234 0.95082 1.70681 1.30772
1.09241 1.44562 0.82549 0.69323 0.74143 0.77744 1.18924 1.18507
1.19738 1.20496 0.90477 1.00223 1.11159 1.20865 0.96897 0.93088
0.95382 1.22218 0.90802 0.97784 0.96145 1.22358 0.93489 0.98287
0.95873 0.86067 1.22628 0.95885 0.79267 1.04191 0.87174 0.89441
0.86924 0.92275 0.92416 0.90879 0.91285 0.94932 0.91661 0.88257
0.94223 0.85275 0.87020 0.93128 0.86805 0.83079 0.88680 0.95588
0.88464 0.88950
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.23 9.52 71.24 0.68 -0.55 16
2 C 0.51 9.38 7.96 87.66 0.70 10.07 16
3 O -0.61 -17.87 17.36 -3.04 -0.05 -17.92 16
4 N -0.62 -9.09 3.34 -809.15 -2.70 -11.79 16
5 C 0.11 1.83 5.80 86.54 0.50 2.33 16
6 C -0.09 -1.15 3.06 -10.48 -0.03 -1.18 16
7 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16
8 C -0.10 -1.71 5.56 29.96 0.17 -1.54 16
9 C 0.05 0.97 5.08 86.21 0.44 1.41 16
10 N -0.53 -9.84 4.67 -901.56 -4.21 -14.04 16
11 C 0.11 2.33 5.10 85.56 0.44 2.76 16
12 C -0.15 -4.21 4.95 -19.84 -0.10 -4.31 16
13 C -0.06 -2.13 7.89 22.25 0.18 -1.95 16
14 C -0.24 -10.56 9.17 22.39 0.21 -10.35 16
15 C 0.11 5.69 6.65 22.58 0.15 5.84 16
16 O -0.25 -15.19 9.16 -22.80 -0.21 -15.40 16
17 C -0.49 -28.68 9.49 67.92 0.64 -28.03 16
18 H 0.09 4.90 5.20 -2.91 -0.02 4.88 16
19 C -0.05 -2.65 5.49 84.84 0.47 -2.19 16
20 N -0.92 -57.82 13.70 21.61 0.30 -57.52 16
21 Si 1.15 48.76 29.92 68.60 2.05 50.81 16
22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
23 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16
24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16
25 C -0.20 -8.41 9.99 22.39 0.22 -8.19 16
26 C -0.04 -1.38 9.69 22.25 0.22 -1.17 16
27 C 0.06 0.73 4.17 86.39 0.36 1.09 16
28 C -0.08 -0.78 3.75 -9.52 -0.04 -0.82 16
29 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16
30 C 0.10 0.70 5.80 87.01 0.50 1.21 16
31 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16
32 H 0.09 0.79 8.12 -2.39 -0.02 0.77 16
33 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16
34 H 0.06 1.24 8.05 -2.39 -0.02 1.22 16
35 H 0.06 1.13 5.76 -2.38 -0.01 1.12 16
36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16
37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16
38 H 0.03 0.66 6.57 -2.39 -0.02 0.64 16
39 H 0.06 1.66 5.62 -2.39 -0.01 1.65 16
40 H 0.10 1.63 7.89 -2.39 -0.02 1.61 16
41 H 0.04 0.79 8.05 -2.39 -0.02 0.77 16
42 H 0.13 3.67 7.87 -2.91 -0.02 3.65 16
43 H 0.11 5.12 5.64 -2.91 -0.02 5.11 16
44 H 0.26 17.08 7.97 -92.71 -0.74 16.34 16
45 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16
46 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16
47 H 0.09 0.87 7.96 -2.39 -0.02 0.86 16
48 H 0.03 0.37 6.88 -2.39 -0.02 0.36 16
49 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16
50 H 0.09 0.34 7.77 -2.39 -0.02 0.32 16
Total: -1.00 -80.06 391.06 1.85 -78.21
By element:
Atomic # 1 Polarization: 22.26 SS G_CDS: 0.97 Total: 23.23 kcal
Atomic # 6 Polarization: -41.28 SS G_CDS: 5.70 Total: -35.58 kcal
Atomic # 7 Polarization: -76.74 SS G_CDS: -6.62 Total: -83.36 kcal
Atomic # 8 Polarization: -33.06 SS G_CDS: -0.26 Total: -33.32 kcal
Atomic # 14 Polarization: 48.76 SS G_CDS: 2.05 Total: 50.81 kcal
Total: -80.06 1.85 -78.21 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087854570.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.148 kcal
(2) G-P(sol) polarization free energy of solvation -80.055 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.908 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.210 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds