Wall clock time and date at job start Wed Apr 1 2020 03:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47307 * 2 1 4 4 C 1.35710 * 117.00275 * 180.02562 * 3 2 1 5 5 C 1.39001 * 119.90965 * 359.72558 * 4 3 2 6 6 C 1.37705 * 120.08687 * 179.76600 * 5 4 3 7 7 C 1.39730 * 119.90952 * 0.48866 * 6 5 4 8 8 C 1.47608 * 120.08777 * 179.78959 * 7 6 5 9 9 O 1.21579 * 120.00108 * 172.02484 * 8 7 6 10 10 N 1.34779 * 119.99781 * 352.02500 * 8 7 6 11 11 C 1.47756 * 125.82113 * 184.99473 * 10 8 7 12 12 C 1.56198 * 104.00876 * 154.06227 * 11 10 8 13 13 H 1.09006 * 113.91425 * 161.25634 * 12 11 10 14 14 C 1.52876 * 106.67181 * 286.46397 * 12 11 10 15 15 C 1.51605 * 111.54956 * 168.35303 * 14 12 11 16 16 N 1.44328 * 113.11648 * 320.90879 * 15 14 12 17 17 C 1.36932 * 116.35402 * 187.26073 * 16 15 14 18 18 H 1.08002 * 120.00307 * 184.66087 * 17 16 15 19 19 C 1.38815 * 120.00174 * 4.66934 * 17 16 15 20 20 N 1.31622 * 119.99873 * 325.34310 * 19 17 16 21 21 Si 1.86801 * 120.00391 * 145.35318 * 19 17 16 22 22 H 1.48495 * 109.47405 * 94.99204 * 21 19 17 23 23 H 1.48497 * 109.47000 * 214.99838 * 21 19 17 24 24 H 1.48500 * 109.46687 * 334.99390 * 21 19 17 25 25 C 1.43989 * 127.28942 * 7.28544 * 16 15 14 26 26 C 1.49963 * 116.09652 * 2.48306 * 25 16 15 27 27 H 1.08994 * 108.82427 * 141.05047 * 26 25 16 28 28 C 1.47620 * 125.81802 * 5.30332 * 10 8 7 29 29 C 1.39737 * 119.82780 * 359.76335 * 7 6 5 30 30 C 1.37702 * 119.90700 * 0.02562 * 29 7 6 31 31 H 1.08993 * 109.47309 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47214 * 299.99959 * 1 2 3 33 33 H 1.09005 * 109.47063 * 59.99471 * 1 2 3 34 34 H 1.08995 * 109.47793 * 120.00346 * 2 1 3 35 35 H 1.09004 * 109.47287 * 240.00534 * 2 1 3 36 36 H 1.08001 * 119.95973 * 359.97438 * 5 4 3 37 37 H 1.07997 * 120.04146 * 180.23256 * 6 5 4 38 38 H 1.09006 * 110.49922 * 272.80790 * 11 10 8 39 39 H 1.08999 * 110.50030 * 35.48212 * 11 10 8 40 40 H 1.08996 * 109.06436 * 47.81583 * 14 12 11 41 41 H 1.08997 * 109.05490 * 288.88232 * 14 12 11 42 42 H 1.09005 * 108.74912 * 199.97804 * 15 14 12 43 43 H 1.08998 * 108.66024 * 81.78777 * 15 14 12 44 44 H 0.96999 * 120.00205 * 180.02562 * 20 19 17 45 45 H 1.09000 * 108.15858 * 240.75848 * 25 16 15 46 46 H 1.09002 * 108.15663 * 124.19684 * 25 16 15 47 47 H 1.08995 * 110.07990 * 299.81665 * 28 10 8 48 48 H 1.08996 * 110.08058 * 61.38038 * 28 10 8 49 49 H 1.07999 * 120.04484 * 180.02562 * 29 7 6 50 50 H 1.07996 * 119.95111 * 179.97438 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3517 1.5251 -0.0005 5 6 4.1967 0.4214 0.0047 6 6 5.5624 0.5976 -0.0007 7 6 6.0985 1.8880 -0.0011 8 6 7.5618 2.0814 -0.0022 9 8 8.0278 3.1948 -0.1487 10 7 8.3814 1.0238 0.1592 11 6 9.8527 1.0808 0.2825 12 6 10.2145 -0.2056 1.0912 13 1 11.2601 -0.5019 1.0057 14 6 9.7857 0.0497 2.5362 15 6 9.8224 -1.2220 3.3609 16 7 9.3615 -2.3814 2.6354 17 6 9.2206 -3.5351 3.3593 18 1 8.9523 -4.4554 2.8619 19 6 9.4224 -3.5218 4.7327 20 7 10.3360 -2.7318 5.2559 21 14 8.3978 -4.6252 5.8381 22 1 9.1356 -5.8873 6.0988 23 1 8.1350 -3.9307 7.1241 24 1 7.1081 -4.9347 5.1701 25 6 9.0337 -2.4610 1.2355 26 6 9.2456 -1.2100 0.4362 27 1 9.6434 -1.4807 -0.5418 28 6 7.9628 -0.3897 0.2364 29 6 5.2456 2.9949 -0.0011 30 6 3.8810 2.8103 -0.0001 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 3.7816 -0.5756 0.0096 37 1 6.2183 -0.2604 -0.0004 38 1 10.3195 1.0592 -0.7023 39 1 10.1556 1.9733 0.8300 40 1 8.7712 0.4482 2.5414 41 1 10.4574 0.7830 2.9825 42 1 9.1940 -1.0869 4.2413 43 1 10.8478 -1.3970 3.6865 44 1 10.4773 -2.7228 6.2155 45 1 7.9855 -2.7467 1.1478 46 1 9.6346 -3.2541 0.7906 47 1 7.2902 -0.5351 1.0817 48 1 7.4701 -0.6853 -0.6898 49 1 5.6561 3.9939 -0.0018 50 1 3.2212 3.6652 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088187659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:48 Heat of formation + Delta-G solvation = 14.291724 kcal Electronic energy + Delta-G solvation = -30830.037267 eV Core-core repulsion = 26824.547612 eV Total energy + Delta-G solvation = -4005.489655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.90858 -40.05763 -38.53080 -37.17264 -35.74982 -32.96859 -32.26280 -31.74580 -31.06865 -30.46255 -29.77443 -27.85061 -25.89329 -24.53016 -23.94187 -23.03363 -22.07564 -21.86956 -21.30461 -19.88124 -18.47752 -17.86346 -17.33690 -17.16741 -16.43808 -16.16670 -15.87547 -15.38808 -14.81239 -14.69480 -14.31915 -14.28991 -13.86667 -13.81001 -13.70025 -13.55506 -13.33100 -13.06026 -12.97231 -12.81055 -12.74948 -12.37821 -12.09180 -12.04932 -11.93071 -11.76328 -11.39219 -11.18047 -11.02379 -10.98671 -10.66560 -10.44861 -10.26778 -10.13315 -9.92962 -9.74497 -9.70968 -9.61684 -9.23830 -8.62021 -8.36904 -8.17153 -6.88818 -5.82104 -3.05510 0.82076 1.17824 2.84389 2.85712 3.02376 3.37605 3.48018 3.51202 3.76306 4.40677 4.47849 4.51213 4.56800 4.61245 4.67547 4.75475 4.88456 4.89771 5.02464 5.06104 5.16413 5.23872 5.27237 5.31319 5.41898 5.47067 5.49420 5.51424 5.60227 5.66029 5.78817 5.79514 5.86861 5.93256 5.96232 6.07704 6.12473 6.17342 6.26312 6.31666 6.48910 6.52348 6.55537 6.67277 6.72843 6.73799 7.11507 7.54177 7.58150 7.77450 7.90211 8.22432 8.38353 9.24307 9.98964 10.22803 11.17380 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009158 B = 0.003431 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.748090 B = 8158.483436 C =10411.960218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.315 6.315 4 C 0.153 3.847 5 C -0.217 4.217 6 C -0.077 4.077 7 C -0.170 4.170 8 C 0.577 3.423 9 O -0.548 6.548 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.084 4.084 13 H 0.101 0.899 14 C -0.129 4.129 15 C 0.184 3.816 16 N -0.598 5.598 17 C -0.275 4.275 18 H 0.076 0.924 19 C 0.012 3.988 20 N -0.884 5.884 21 Si 0.876 3.124 22 H -0.290 1.290 23 H -0.289 1.289 24 H -0.281 1.281 25 C 0.181 3.819 26 C -0.102 4.102 27 H 0.076 0.924 28 C 0.099 3.901 29 C -0.021 4.021 30 C -0.165 4.165 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.133 0.867 37 H 0.165 0.835 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.037 0.963 43 H 0.058 0.942 44 H 0.253 0.747 45 H 0.016 0.984 46 H 0.020 0.980 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.141 0.859 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.928 6.724 -12.967 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.228 6.228 4 C 0.107 3.893 5 C -0.236 4.236 6 C -0.095 4.095 7 C -0.173 4.173 8 C 0.368 3.632 9 O -0.428 6.428 10 N -0.342 5.342 11 C -0.014 4.014 12 C -0.103 4.103 13 H 0.119 0.881 14 C -0.167 4.167 15 C 0.060 3.940 16 N -0.324 5.324 17 C -0.403 4.403 18 H 0.094 0.906 19 C -0.187 4.187 20 N -0.528 5.528 21 Si 0.705 3.295 22 H -0.217 1.217 23 H -0.215 1.215 24 H -0.206 1.206 25 C 0.054 3.946 26 C -0.121 4.121 27 H 0.094 0.906 28 C -0.023 4.023 29 C -0.040 4.040 30 C -0.184 4.184 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.151 0.849 37 H 0.182 0.818 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.038 0.962 47 H 0.103 0.897 48 H 0.093 0.907 49 H 0.159 0.841 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.832 7.618 -12.933 19.747 hybrid contribution -0.566 -0.934 0.737 1.317 sum -13.398 6.684 -12.196 19.311 Atomic orbital electron populations 1.21779 0.92604 1.03017 1.03507 1.22865 0.95987 0.81670 1.01886 1.86024 1.19075 1.29783 1.87915 1.19305 0.82277 0.94280 0.93484 1.21259 0.94150 0.98271 1.09894 1.22641 0.95652 0.98314 0.92896 1.19767 0.92883 0.94201 1.10441 1.17813 0.85760 0.83221 0.76393 1.90750 1.77350 1.23624 1.51058 1.48511 1.07858 1.06339 1.71508 1.22709 0.79234 0.99629 0.99794 1.22321 0.99539 0.92618 0.95834 0.88062 1.21757 1.00315 1.00503 0.94165 1.20141 1.00536 0.82211 0.91138 1.42861 1.77869 1.08331 1.03316 1.19150 1.42626 0.89178 0.89368 0.90586 1.24663 0.98507 0.98494 0.97048 1.70407 1.28853 1.42017 1.11476 0.86665 0.82036 0.80086 0.80706 1.21717 1.21548 1.20637 1.19195 0.97827 0.92677 0.84889 1.21572 0.94345 0.96087 1.00111 0.90597 1.22647 0.98191 0.80439 1.01065 1.21045 0.91490 0.98987 0.92469 1.20358 0.94934 0.94883 1.08177 0.90205 0.91453 0.91552 0.91543 0.91734 0.84875 0.81801 0.91634 0.90295 0.93252 0.92399 0.94488 0.92422 0.93710 0.96611 0.96195 0.89723 0.90679 0.84121 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.15 0.38 -0.52 16 2 C 0.05 0.39 5.45 37.15 0.20 0.60 16 3 O -0.31 -3.36 10.12 -18.83 -0.19 -3.55 16 4 C 0.15 1.77 6.70 -39.02 -0.26 1.51 16 5 C -0.22 -2.44 9.01 -39.49 -0.36 -2.79 16 6 C -0.08 -0.96 8.62 -39.22 -0.34 -1.30 16 7 C -0.17 -2.38 5.87 -104.96 -0.62 -2.99 16 8 C 0.58 9.27 7.81 -12.44 -0.10 9.17 16 9 O -0.55 -10.25 16.67 5.30 0.09 -10.17 16 10 N -0.61 -9.01 2.80 -174.20 -0.49 -9.50 16 11 C 0.11 1.55 6.23 -1.64 -0.01 1.53 16 12 C -0.08 -1.30 3.77 -88.36 -0.33 -1.63 16 13 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 14 C -0.13 -2.38 4.98 -27.50 -0.14 -2.52 16 15 C 0.18 4.29 4.69 -5.91 -0.03 4.26 16 16 N -0.60 -14.06 3.25 -179.58 -0.58 -14.64 16 17 C -0.28 -7.27 9.44 -15.06 -0.14 -7.41 16 18 H 0.08 1.97 7.98 -52.49 -0.42 1.55 16 19 C 0.01 0.33 4.77 -17.43 -0.08 0.24 16 20 N -0.88 -24.81 10.21 55.49 0.57 -24.25 16 21 Si 0.88 21.04 29.67 -169.99 -5.04 15.99 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.18 3.38 5.64 -6.88 -0.04 3.34 16 26 C -0.10 -1.51 2.68 -91.22 -0.24 -1.75 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 C 0.10 1.33 3.52 -3.13 -0.01 1.32 16 29 C -0.02 -0.27 9.58 -39.22 -0.38 -0.64 16 30 C -0.16 -1.90 9.97 -39.50 -0.39 -2.29 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.49 7.64 -51.93 -0.40 0.10 16 35 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 36 H 0.13 1.21 6.28 -52.49 -0.33 0.88 16 37 H 0.17 1.89 2.76 -57.16 -0.16 1.73 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.18 7.98 -51.93 -0.41 0.77 16 40 H 0.05 0.93 6.77 -51.93 -0.35 0.58 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.04 0.98 6.96 -51.93 -0.36 0.61 16 43 H 0.06 1.52 6.80 -51.93 -0.35 1.16 16 44 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.02 0.29 7.78 -51.93 -0.40 -0.11 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 1.24 6.42 -51.93 -0.33 0.91 16 48 H 0.08 0.83 6.80 -51.93 -0.35 0.48 16 49 H 0.14 1.72 7.67 -52.49 -0.40 1.31 16 50 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -31.39 384.06 -10.36 -41.75 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.61 Total: 0.46 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.88 Total: -1.88 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.51 Total: -48.39 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.10 Total: -13.72 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.04 Total: 15.99 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.39 -10.36 -41.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088187659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.037 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds