Wall clock time and date at job start Wed Apr 1 2020 03:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47307 * 2 1 4 4 C 1.35710 * 117.00275 * 180.02562 * 3 2 1 5 5 C 1.39001 * 119.90965 * 359.72558 * 4 3 2 6 6 C 1.37705 * 120.08687 * 179.76600 * 5 4 3 7 7 C 1.39730 * 119.90952 * 0.48866 * 6 5 4 8 8 C 1.47608 * 120.08777 * 179.78959 * 7 6 5 9 9 O 1.21579 * 120.00108 * 172.02484 * 8 7 6 10 10 N 1.34779 * 119.99781 * 352.02500 * 8 7 6 11 11 C 1.47756 * 125.82113 * 184.99473 * 10 8 7 12 12 C 1.56198 * 104.00876 * 154.06227 * 11 10 8 13 13 H 1.09006 * 113.91425 * 161.25634 * 12 11 10 14 14 C 1.52876 * 106.67181 * 286.46397 * 12 11 10 15 15 C 1.51605 * 111.54956 * 168.35303 * 14 12 11 16 16 N 1.44328 * 113.11648 * 320.90879 * 15 14 12 17 17 C 1.36932 * 116.35402 * 187.26073 * 16 15 14 18 18 H 1.08002 * 120.00307 * 184.66087 * 17 16 15 19 19 C 1.38815 * 120.00174 * 4.66934 * 17 16 15 20 20 N 1.31622 * 119.99873 * 325.34310 * 19 17 16 21 21 Si 1.86801 * 120.00391 * 145.35318 * 19 17 16 22 22 H 1.48495 * 109.47405 * 94.99204 * 21 19 17 23 23 H 1.48497 * 109.47000 * 214.99838 * 21 19 17 24 24 H 1.48500 * 109.46687 * 334.99390 * 21 19 17 25 25 C 1.43989 * 127.28942 * 7.28544 * 16 15 14 26 26 C 1.49963 * 116.09652 * 2.48306 * 25 16 15 27 27 H 1.08994 * 108.82427 * 141.05047 * 26 25 16 28 28 C 1.47620 * 125.81802 * 5.30332 * 10 8 7 29 29 C 1.39737 * 119.82780 * 359.76335 * 7 6 5 30 30 C 1.37702 * 119.90700 * 0.02562 * 29 7 6 31 31 H 1.08993 * 109.47309 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47214 * 299.99959 * 1 2 3 33 33 H 1.09005 * 109.47063 * 59.99471 * 1 2 3 34 34 H 1.08995 * 109.47793 * 120.00346 * 2 1 3 35 35 H 1.09004 * 109.47287 * 240.00534 * 2 1 3 36 36 H 1.08001 * 119.95973 * 359.97438 * 5 4 3 37 37 H 1.07997 * 120.04146 * 180.23256 * 6 5 4 38 38 H 1.09006 * 110.49922 * 272.80790 * 11 10 8 39 39 H 1.08999 * 110.50030 * 35.48212 * 11 10 8 40 40 H 1.08996 * 109.06436 * 47.81583 * 14 12 11 41 41 H 1.08997 * 109.05490 * 288.88232 * 14 12 11 42 42 H 1.09005 * 108.74912 * 199.97804 * 15 14 12 43 43 H 1.08998 * 108.66024 * 81.78777 * 15 14 12 44 44 H 0.96999 * 120.00205 * 180.02562 * 20 19 17 45 45 H 1.09000 * 108.15858 * 240.75848 * 25 16 15 46 46 H 1.09002 * 108.15663 * 124.19684 * 25 16 15 47 47 H 1.08995 * 110.07990 * 299.81665 * 28 10 8 48 48 H 1.08996 * 110.08058 * 61.38038 * 28 10 8 49 49 H 1.07999 * 120.04484 * 180.02562 * 29 7 6 50 50 H 1.07996 * 119.95111 * 179.97438 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3517 1.5251 -0.0005 5 6 4.1967 0.4214 0.0047 6 6 5.5624 0.5976 -0.0007 7 6 6.0985 1.8880 -0.0011 8 6 7.5618 2.0814 -0.0022 9 8 8.0278 3.1948 -0.1487 10 7 8.3814 1.0238 0.1592 11 6 9.8527 1.0808 0.2825 12 6 10.2145 -0.2056 1.0912 13 1 11.2601 -0.5019 1.0057 14 6 9.7857 0.0497 2.5362 15 6 9.8224 -1.2220 3.3609 16 7 9.3615 -2.3814 2.6354 17 6 9.2206 -3.5351 3.3593 18 1 8.9523 -4.4554 2.8619 19 6 9.4224 -3.5218 4.7327 20 7 10.3360 -2.7318 5.2559 21 14 8.3978 -4.6252 5.8381 22 1 9.1356 -5.8873 6.0988 23 1 8.1350 -3.9307 7.1241 24 1 7.1081 -4.9347 5.1701 25 6 9.0337 -2.4610 1.2355 26 6 9.2456 -1.2100 0.4362 27 1 9.6434 -1.4807 -0.5418 28 6 7.9628 -0.3897 0.2364 29 6 5.2456 2.9949 -0.0011 30 6 3.8810 2.8103 -0.0001 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 3.7816 -0.5756 0.0096 37 1 6.2183 -0.2604 -0.0004 38 1 10.3195 1.0592 -0.7023 39 1 10.1556 1.9733 0.8300 40 1 8.7712 0.4482 2.5414 41 1 10.4574 0.7830 2.9825 42 1 9.1940 -1.0869 4.2413 43 1 10.8478 -1.3970 3.6865 44 1 10.4773 -2.7228 6.2155 45 1 7.9855 -2.7467 1.1478 46 1 9.6346 -3.2541 0.7906 47 1 7.2902 -0.5351 1.0817 48 1 7.4701 -0.6853 -0.6898 49 1 5.6561 3.9939 -0.0018 50 1 3.2212 3.6652 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088187659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:47 Heat of formation + Delta-G solvation = -2.964758 kcal Electronic energy + Delta-G solvation = -30830.785565 eV Core-core repulsion = 26824.547612 eV Total energy + Delta-G solvation = -4006.237952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.01803 -41.01467 -39.77602 -38.14497 -37.36795 -34.39487 -33.44969 -32.82922 -32.06320 -31.96628 -30.87035 -29.13747 -27.36884 -25.75421 -24.98734 -24.33444 -23.33152 -23.03735 -22.44680 -20.95037 -19.59359 -19.08446 -18.91032 -18.39950 -17.27466 -17.16495 -17.06775 -16.72688 -16.36176 -15.85344 -15.79412 -15.58056 -15.36758 -14.89090 -14.83565 -14.65836 -14.34515 -14.30515 -14.07173 -13.99719 -13.73219 -13.49068 -13.29091 -13.14151 -12.97902 -12.92007 -12.88357 -12.63672 -12.41167 -12.27927 -11.99959 -11.88900 -11.68488 -11.62355 -11.41704 -11.25880 -11.16518 -11.00540 -10.22307 -10.14371 -9.75082 -9.28996 -8.83874 -7.85292 -5.10477 -0.15664 0.28109 1.44942 1.51038 1.59494 1.74802 1.89308 2.14268 2.53511 2.77680 3.17446 3.30861 3.42557 3.63091 3.77314 3.79746 3.82241 3.85273 4.05682 4.10326 4.15535 4.20740 4.26644 4.35408 4.38249 4.44265 4.47823 4.51339 4.59934 4.65777 4.79902 4.84173 4.86738 4.91730 4.94390 4.98582 5.03601 5.06808 5.10745 5.16995 5.20180 5.26782 5.27448 5.32926 5.40123 5.60890 5.62887 5.73486 5.91805 6.32313 6.36350 6.41279 7.04158 7.21947 8.10026 8.26482 9.11988 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009158 B = 0.003431 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.748090 B = 8158.483436 C =10411.960218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 O -0.324 6.324 4 C 0.152 3.848 5 C -0.217 4.217 6 C -0.077 4.077 7 C -0.192 4.192 8 C 0.573 3.427 9 O -0.585 6.585 10 N -0.610 5.610 11 C 0.115 3.885 12 C -0.080 4.080 13 H 0.108 0.892 14 C -0.117 4.117 15 C 0.202 3.798 16 N -0.609 5.609 17 C -0.282 4.282 18 H 0.080 0.920 19 C -0.041 4.041 20 N -0.915 5.915 21 Si 0.938 3.062 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.271 1.271 25 C 0.174 3.826 26 C -0.097 4.097 27 H 0.111 0.889 28 C 0.103 3.897 29 C -0.028 4.028 30 C -0.168 4.168 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.157 0.843 37 H 0.174 0.826 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.060 0.940 42 H -0.005 1.005 43 H 0.021 0.979 44 H 0.247 0.753 45 H 0.028 0.972 46 H 0.022 0.978 47 H 0.072 0.928 48 H 0.110 0.890 49 H 0.138 0.862 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.696 5.727 -15.047 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.237 6.237 4 C 0.105 3.895 5 C -0.236 4.236 6 C -0.094 4.094 7 C -0.195 4.195 8 C 0.366 3.634 9 O -0.467 6.467 10 N -0.342 5.342 11 C -0.007 4.007 12 C -0.099 4.099 13 H 0.126 0.874 14 C -0.155 4.155 15 C 0.076 3.924 16 N -0.335 5.335 17 C -0.411 4.411 18 H 0.098 0.902 19 C -0.238 4.238 20 N -0.561 5.561 21 Si 0.766 3.234 22 H -0.215 1.215 23 H -0.225 1.225 24 H -0.196 1.196 25 C 0.049 3.951 26 C -0.116 4.116 27 H 0.129 0.871 28 C -0.019 4.019 29 C -0.047 4.047 30 C -0.186 4.186 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.174 0.826 37 H 0.191 0.809 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.013 0.987 43 H 0.039 0.961 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.040 0.960 47 H 0.090 0.910 48 H 0.128 0.872 49 H 0.156 0.844 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.626 6.582 -15.044 21.990 hybrid contribution -0.086 -0.681 1.378 1.539 sum -14.712 5.901 -13.666 20.929 Atomic orbital electron populations 1.21810 0.91346 1.04227 1.03287 1.23167 0.97061 0.80447 1.02712 1.86032 1.18420 1.31743 1.87545 1.19453 0.82920 0.94395 0.92697 1.21508 0.93653 0.99347 1.09060 1.22714 0.96313 0.97770 0.92647 1.19760 0.91848 0.95372 1.12513 1.18149 0.86649 0.82853 0.75796 1.90721 1.78078 1.24925 1.52979 1.48553 1.08002 1.06696 1.70909 1.22670 0.79243 0.98213 1.00601 1.22265 1.00150 0.93871 0.93601 0.87383 1.21563 1.00307 0.97786 0.95890 1.19693 0.97290 0.84431 0.90953 1.43116 1.77666 1.07353 1.05342 1.19525 1.41384 0.90289 0.89920 0.90178 1.25337 0.99436 1.00554 0.98430 1.70555 1.30259 1.44207 1.11056 0.85709 0.80718 0.78315 0.78650 1.21531 1.22462 1.19638 1.19409 0.98188 0.94913 0.82589 1.21527 0.94947 0.94359 1.00756 0.87104 1.22707 0.97413 0.79408 1.02354 1.21103 0.92056 0.98785 0.92792 1.20539 0.94621 0.95803 1.07673 0.88271 0.91950 0.91511 0.91150 0.90393 0.82574 0.80935 0.89152 0.91369 0.93723 0.92084 0.98685 0.96101 0.94380 0.95425 0.96022 0.90952 0.87210 0.84380 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 71.98 0.74 -0.68 16 2 C 0.04 0.52 5.45 71.98 0.39 0.91 16 3 O -0.32 -6.23 10.12 -90.31 -0.91 -7.15 16 4 C 0.15 3.22 6.70 22.63 0.15 3.38 16 5 C -0.22 -4.33 9.01 22.33 0.20 -4.13 16 6 C -0.08 -1.74 8.62 22.50 0.19 -1.54 16 7 C -0.19 -5.18 5.87 -20.08 -0.12 -5.30 16 8 C 0.57 17.92 7.81 86.72 0.68 18.60 16 9 O -0.58 -21.85 16.67 -3.97 -0.07 -21.92 16 10 N -0.61 -16.86 2.80 -823.30 -2.31 -19.17 16 11 C 0.11 3.03 6.23 87.25 0.54 3.57 16 12 C -0.08 -2.32 3.77 -9.33 -0.04 -2.35 16 13 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 14 C -0.12 -4.34 4.98 30.10 0.15 -4.19 16 15 C 0.20 9.66 4.69 86.33 0.40 10.07 16 16 N -0.61 -28.59 3.25 -722.06 -2.35 -30.94 16 17 C -0.28 -14.92 9.44 84.03 0.79 -14.12 16 18 H 0.08 4.09 7.98 -2.91 -0.02 4.06 16 19 C -0.04 -2.27 4.77 84.86 0.40 -1.86 16 20 N -0.91 -53.23 10.21 21.65 0.22 -53.01 16 21 Si 0.94 43.90 29.67 68.60 2.04 45.93 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 C 0.17 6.14 5.64 85.87 0.48 6.63 16 26 C -0.10 -2.57 2.68 -11.19 -0.03 -2.60 16 27 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 28 C 0.10 2.46 3.52 86.36 0.30 2.77 16 29 C -0.03 -0.71 9.58 22.51 0.22 -0.49 16 30 C -0.17 -3.65 9.97 22.32 0.22 -3.43 16 31 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.07 0.86 7.64 -2.39 -0.02 0.84 16 35 H 0.08 0.80 7.66 -2.39 -0.02 0.78 16 36 H 0.16 2.30 6.28 -2.91 -0.02 2.29 16 37 H 0.17 3.46 2.76 -7.30 -0.02 3.44 16 38 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.07 1.97 7.98 -2.39 -0.02 1.96 16 40 H 0.04 1.68 6.77 -2.39 -0.02 1.67 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H -0.01 -0.28 6.96 -2.38 -0.02 -0.30 16 43 H 0.02 1.16 6.80 -2.39 -0.02 1.14 16 44 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.03 0.94 7.78 -2.39 -0.02 0.92 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.07 1.96 6.42 -2.39 -0.02 1.95 16 48 H 0.11 1.94 6.80 -2.39 -0.02 1.92 16 49 H 0.14 3.42 7.67 -2.91 -0.02 3.40 16 50 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -69.90 384.06 3.25 -66.65 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.93 Total: 14.38 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 5.70 Total: 5.22 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -4.43 Total: -103.12 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.98 Total: -29.07 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.04 Total: 45.93 kcal Total: -69.90 3.25 -66.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088187659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.682 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds