Wall clock time and date at job start Wed Apr 1 2020 03:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42892 * 109.47269 * 2 1 4 4 C 1.35661 * 117.00307 * 179.97438 * 3 2 1 5 5 C 1.38715 * 120.14596 * 0.23518 * 4 3 2 6 6 C 1.38047 * 120.08334 * 180.28071 * 5 4 3 7 7 C 1.38554 * 120.39138 * 359.73659 * 6 5 4 8 8 C 1.37790 * 120.29739 * 0.02562 * 7 6 5 9 9 C 1.39708 * 119.90858 * 359.97438 * 8 7 6 10 10 C 1.47538 * 120.18838 * 179.97438 * 9 8 7 11 11 O 1.21586 * 119.99323 * 142.54071 * 10 9 8 12 12 N 1.34773 * 120.00186 * 322.53924 * 10 9 8 13 13 C 1.48250 * 126.41639 * 5.44608 * 12 10 9 14 14 C 1.53734 * 105.90354 * 211.09269 * 13 12 10 15 15 H 1.08998 * 112.28429 * 104.65771 * 14 13 12 16 16 C 1.54458 * 109.01482 * 229.74663 * 14 13 12 17 17 N 1.48334 * 104.32129 * 137.92494 * 16 14 13 18 18 C 1.36947 * 128.19393 * 138.19233 * 17 16 14 19 19 H 1.07994 * 119.99637 * 178.58685 * 18 17 16 20 20 C 1.38805 * 119.99793 * 358.59503 * 18 17 16 21 21 N 1.31623 * 119.99615 * 211.51325 * 20 18 17 22 22 Si 1.86793 * 120.00565 * 31.51447 * 20 18 17 23 23 H 1.48498 * 109.47433 * 266.95167 * 22 20 18 24 24 H 1.48501 * 109.47441 * 146.94586 * 22 20 18 25 25 H 1.48504 * 109.46885 * 26.94906 * 22 20 18 26 26 C 1.48324 * 103.60718 * 318.45687 * 17 16 14 27 27 C 1.54032 * 104.53293 * 41.50719 * 26 17 16 28 28 C 1.53002 * 112.12147 * 97.20333 * 27 26 17 29 29 C 1.47199 * 126.70354 * 185.76306 * 12 10 9 30 30 H 1.09004 * 109.46786 * 59.99908 * 1 2 3 31 31 H 1.09001 * 109.47341 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47154 * 300.00228 * 1 2 3 33 33 H 1.08999 * 109.47154 * 239.99771 * 2 1 3 34 34 H 1.09004 * 109.46786 * 120.00092 * 2 1 3 35 35 H 1.08003 * 119.95741 * 359.97438 * 5 4 3 36 36 H 1.08003 * 119.80512 * 179.76465 * 6 5 4 37 37 H 1.07997 * 119.84859 * 180.02562 * 7 6 5 38 38 H 1.08006 * 120.04224 * 180.02562 * 8 7 6 39 39 H 1.09004 * 110.06995 * 92.15195 * 13 12 10 40 40 H 1.08996 * 110.56369 * 330.30012 * 13 12 10 41 41 H 1.08999 * 110.45789 * 19.21754 * 16 14 13 42 42 H 1.08994 * 110.46121 * 256.64044 * 16 14 13 43 43 H 0.96999 * 120.00319 * 5.02647 * 21 20 18 44 44 H 1.09003 * 110.46875 * 160.25911 * 26 17 16 45 45 H 1.09003 * 110.46173 * 282.83645 * 26 17 16 46 46 H 1.09002 * 109.47495 * 302.42286 * 28 27 26 47 47 H 1.08998 * 109.47151 * 62.41684 * 28 27 26 48 48 H 1.09001 * 109.47237 * 182.41781 * 28 27 26 49 49 H 1.09004 * 110.06401 * 29.38436 * 29 12 10 50 50 H 1.08993 * 110.06092 * 267.86525 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3512 1.5250 0.0005 5 6 4.1991 0.4271 -0.0039 6 6 5.5674 0.6095 0.0025 7 6 6.1043 1.8867 0.0079 8 6 5.2769 2.9886 0.0074 9 6 3.8903 2.8185 0.0010 10 6 2.9986 3.9939 0.0010 11 8 1.9680 3.9750 -0.6439 12 7 3.3264 5.0884 0.7158 13 6 4.5913 5.3093 1.4568 14 6 4.2263 6.1966 2.6580 15 1 4.1974 5.6359 3.5923 16 6 5.2071 7.3882 2.7200 17 7 4.3483 8.5540 3.0417 18 6 4.6030 9.5781 3.9145 19 1 3.8877 10.3788 4.0309 20 6 5.7805 9.5870 4.6494 21 7 5.8019 10.1226 5.8516 22 14 7.3348 8.8390 3.9324 23 1 7.4456 7.4217 4.3614 24 1 8.5172 9.5964 4.4157 25 1 7.2772 8.9044 2.4499 26 6 3.1456 8.3445 2.1994 27 6 2.8555 6.8356 2.3082 28 6 1.7842 6.5290 3.3566 29 6 2.4982 6.2886 0.9165 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.7881 -0.5717 -0.0073 36 1 6.2234 -0.2486 0.0029 37 1 7.1761 2.0193 0.0125 38 1 5.6999 3.9824 0.0112 39 1 5.3134 5.8205 0.8201 40 1 5.0026 4.3613 1.8033 41 1 5.6961 7.5296 1.7561 42 1 5.9474 7.2320 3.5046 43 1 4.9802 10.4452 6.2535 44 1 2.3051 8.9217 2.5847 45 1 3.3531 8.6165 1.1644 46 1 2.1001 6.9195 4.3240 47 1 0.8450 6.9989 3.0645 48 1 1.6440 5.4505 3.4282 49 1 1.4414 6.0244 0.8786 50 1 2.7260 7.0321 0.1527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092244968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:57 Heat of formation + Delta-G solvation = 0.684822 kcal Electronic energy + Delta-G solvation = -31196.099607 eV Core-core repulsion = 27190.019913 eV Total energy + Delta-G solvation = -4006.079694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.89804 -39.96501 -38.30438 -37.54346 -35.13254 -32.94905 -32.28253 -31.66536 -31.03324 -30.13805 -29.75865 -26.77525 -25.80804 -25.56775 -24.41082 -23.36112 -22.11122 -21.65860 -20.87103 -19.77013 -18.90769 -18.10279 -17.30120 -17.07051 -16.41674 -16.29348 -16.05490 -15.35740 -15.18673 -15.01576 -14.50352 -14.17513 -14.02207 -13.79758 -13.68501 -13.35644 -13.25550 -12.98724 -12.88674 -12.81899 -12.48505 -12.34245 -12.22800 -12.01237 -11.96190 -11.71422 -11.35469 -11.26964 -11.23237 -11.04771 -10.83951 -10.56599 -10.39493 -10.26333 -10.07247 -9.76287 -9.64537 -9.27471 -9.22978 -8.62607 -8.48593 -8.39477 -7.19981 -6.39914 -3.16053 0.74302 1.14031 2.79314 2.89906 3.04169 3.36332 3.50861 3.58628 3.65641 4.33381 4.47744 4.58728 4.59959 4.60335 4.68084 4.73939 4.80065 4.89523 4.95943 5.02801 5.07255 5.15542 5.19946 5.30535 5.39845 5.41666 5.46038 5.50242 5.54982 5.56752 5.76373 5.77111 5.82403 5.88422 5.93530 6.00579 6.04124 6.11277 6.16222 6.17451 6.30432 6.37336 6.43275 6.45088 6.51981 6.64963 6.69941 6.75675 7.13776 7.54024 7.63800 8.27467 8.28101 8.96868 9.53597 10.27131 11.08899 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.003139 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.958827 B = 8918.932195 C =10024.208616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.291 6.291 4 C 0.181 3.819 5 C -0.220 4.220 6 C -0.058 4.058 7 C -0.165 4.165 8 C -0.052 4.052 9 C -0.161 4.161 10 C 0.580 3.420 11 O -0.530 6.530 12 N -0.612 5.612 13 C 0.099 3.901 14 C -0.108 4.108 15 H 0.090 0.910 16 C 0.112 3.888 17 N -0.603 5.603 18 C -0.327 4.327 19 H 0.082 0.918 20 C -0.016 4.016 21 N -0.909 5.909 22 Si 1.045 2.955 23 H -0.295 1.295 24 H -0.300 1.300 25 H -0.287 1.287 26 C 0.141 3.859 27 C -0.084 4.084 28 C -0.120 4.120 29 C 0.121 3.879 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.066 0.934 43 H 0.265 0.735 44 H 0.056 0.944 45 H 0.030 0.970 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.047 0.953 49 H 0.076 0.924 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 -22.182 -11.890 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.204 6.204 4 C 0.133 3.867 5 C -0.239 4.239 6 C -0.077 4.077 7 C -0.183 4.183 8 C -0.071 4.071 9 C -0.165 4.165 10 C 0.369 3.631 11 O -0.407 6.407 12 N -0.345 5.345 13 C -0.024 4.024 14 C -0.129 4.129 15 H 0.108 0.892 16 C -0.015 4.015 17 N -0.327 5.327 18 C -0.453 4.453 19 H 0.100 0.900 20 C -0.217 4.217 21 N -0.548 5.548 22 Si 0.878 3.122 23 H -0.224 1.224 24 H -0.228 1.228 25 H -0.213 1.213 26 C 0.014 3.986 27 C -0.087 4.087 28 C -0.178 4.178 29 C -0.001 4.001 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.095 0.905 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.070 -22.171 -11.916 25.357 hybrid contribution -1.329 -0.065 -0.295 1.363 sum -4.399 -22.236 -12.211 25.746 Atomic orbital electron populations 1.21756 0.92502 1.02618 1.03983 1.22857 0.96345 0.81948 1.01214 1.86255 1.18132 1.28950 1.87017 1.18904 0.82935 0.92508 0.92353 1.21199 0.94390 0.97829 1.10464 1.21102 0.94210 0.97549 0.94801 1.21024 1.00253 0.92086 1.04983 1.21452 0.91074 1.00193 0.94375 1.19229 0.93798 0.91205 1.12241 1.17604 0.85273 0.81130 0.79070 1.90786 1.25958 1.81737 1.42184 1.48734 1.19005 1.16705 1.50053 1.22733 0.86376 1.00058 0.93196 1.23069 0.96013 0.96681 0.97138 0.89152 1.22205 0.93578 0.86972 0.98704 1.45494 1.15386 1.23781 1.48053 1.19991 1.06825 1.02730 1.15727 0.90038 1.25613 1.00888 1.00662 0.94529 1.70888 1.31426 1.41621 1.10856 0.84109 0.77574 0.74793 0.75718 1.22443 1.22770 1.21287 1.21768 0.91192 0.91401 0.94225 1.22250 0.94959 0.98005 0.93495 1.21587 0.96966 1.00366 0.98847 1.22142 0.95800 0.85865 0.96330 0.91255 0.90426 0.91413 0.91961 0.92020 0.84991 0.85388 0.85113 0.84264 0.90687 0.90165 0.94735 0.91664 0.92532 0.92547 0.95235 0.91477 0.92839 0.93367 0.90506 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.77 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.29 -3.91 8.85 -35.49 -0.31 -4.23 16 4 C 0.18 2.31 6.67 -38.70 -0.26 2.06 16 5 C -0.22 -2.11 9.03 -39.48 -0.36 -2.47 16 6 C -0.06 -0.49 10.03 -39.54 -0.40 -0.89 16 7 C -0.17 -1.49 10.02 -39.63 -0.40 -1.89 16 8 C -0.05 -0.58 7.79 -39.20 -0.31 -0.89 16 9 C -0.16 -2.22 5.54 -104.85 -0.58 -2.80 16 10 C 0.58 9.51 7.38 -12.47 -0.09 9.42 16 11 O -0.53 -10.32 16.33 -11.52 -0.19 -10.51 16 12 N -0.61 -9.36 3.34 -172.02 -0.57 -9.93 16 13 C 0.10 1.38 4.84 -2.70 -0.01 1.37 16 14 C -0.11 -1.81 3.71 -88.29 -0.33 -2.14 16 15 H 0.09 1.52 7.93 -51.93 -0.41 1.11 16 16 C 0.11 2.28 4.50 -2.27 -0.01 2.27 16 17 N -0.60 -14.18 3.34 -168.74 -0.56 -14.74 16 18 C -0.33 -9.04 10.56 -15.06 -0.16 -9.20 16 19 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 20 C -0.02 -0.45 5.45 -17.43 -0.10 -0.55 16 21 N -0.91 -27.73 13.70 55.49 0.76 -26.97 16 22 Si 1.05 25.51 25.03 -169.99 -4.25 21.25 16 23 H -0.30 -6.76 6.51 56.52 0.37 -6.39 16 24 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -6.59 6.61 56.52 0.37 -6.22 16 26 C 0.14 2.72 6.36 -2.50 -0.02 2.71 16 27 C -0.08 -1.40 1.07 -152.40 -0.16 -1.56 16 28 C -0.12 -1.88 8.59 37.16 0.32 -1.56 16 29 C 0.12 1.87 6.21 -3.28 -0.02 1.85 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 34 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 35 H 0.13 0.93 6.30 -52.48 -0.33 0.60 16 36 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.14 1.41 5.78 -52.48 -0.30 1.10 16 39 H 0.08 0.98 6.69 -51.93 -0.35 0.63 16 40 H 0.08 0.99 6.11 -51.93 -0.32 0.67 16 41 H 0.04 0.68 6.79 -51.93 -0.35 0.33 16 42 H 0.07 1.44 3.76 -51.93 -0.20 1.24 16 43 H 0.26 8.00 8.73 -40.82 -0.36 7.64 16 44 H 0.06 1.09 7.90 -51.93 -0.41 0.68 16 45 H 0.03 0.55 7.16 -51.93 -0.37 0.18 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 1.20 7.69 -51.93 -0.40 0.80 16 50 H 0.07 1.07 7.10 -51.93 -0.37 0.70 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -34.04 384.60 -9.25 -43.29 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.62 Total: 0.43 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.29 Total: -4.39 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.38 Total: -51.65 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.50 Total: -14.74 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -4.25 Total: 21.25 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.04 -9.25 -43.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092244968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.974 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds