Wall clock time and date at job start Wed Apr 1 2020 03:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42892 * 109.47269 * 2 1 4 4 C 1.35661 * 117.00307 * 179.97438 * 3 2 1 5 5 C 1.38715 * 120.14596 * 0.23518 * 4 3 2 6 6 C 1.38047 * 120.08334 * 180.28071 * 5 4 3 7 7 C 1.38554 * 120.39138 * 359.73659 * 6 5 4 8 8 C 1.37790 * 120.29739 * 0.02562 * 7 6 5 9 9 C 1.39708 * 119.90858 * 359.97438 * 8 7 6 10 10 C 1.47538 * 120.18838 * 179.97438 * 9 8 7 11 11 O 1.21586 * 119.99323 * 142.54071 * 10 9 8 12 12 N 1.34773 * 120.00186 * 322.53924 * 10 9 8 13 13 C 1.48250 * 126.41639 * 5.44608 * 12 10 9 14 14 C 1.53734 * 105.90354 * 211.09269 * 13 12 10 15 15 H 1.08998 * 112.28429 * 104.65771 * 14 13 12 16 16 C 1.54458 * 109.01482 * 229.74663 * 14 13 12 17 17 N 1.48334 * 104.32129 * 137.92494 * 16 14 13 18 18 C 1.36947 * 128.19393 * 138.19233 * 17 16 14 19 19 H 1.07994 * 119.99637 * 178.58685 * 18 17 16 20 20 C 1.38805 * 119.99793 * 358.59503 * 18 17 16 21 21 N 1.31623 * 119.99615 * 211.51325 * 20 18 17 22 22 Si 1.86793 * 120.00565 * 31.51447 * 20 18 17 23 23 H 1.48498 * 109.47433 * 266.95167 * 22 20 18 24 24 H 1.48501 * 109.47441 * 146.94586 * 22 20 18 25 25 H 1.48504 * 109.46885 * 26.94906 * 22 20 18 26 26 C 1.48324 * 103.60718 * 318.45687 * 17 16 14 27 27 C 1.54032 * 104.53293 * 41.50719 * 26 17 16 28 28 C 1.53002 * 112.12147 * 97.20333 * 27 26 17 29 29 C 1.47199 * 126.70354 * 185.76306 * 12 10 9 30 30 H 1.09004 * 109.46786 * 59.99908 * 1 2 3 31 31 H 1.09001 * 109.47341 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47154 * 300.00228 * 1 2 3 33 33 H 1.08999 * 109.47154 * 239.99771 * 2 1 3 34 34 H 1.09004 * 109.46786 * 120.00092 * 2 1 3 35 35 H 1.08003 * 119.95741 * 359.97438 * 5 4 3 36 36 H 1.08003 * 119.80512 * 179.76465 * 6 5 4 37 37 H 1.07997 * 119.84859 * 180.02562 * 7 6 5 38 38 H 1.08006 * 120.04224 * 180.02562 * 8 7 6 39 39 H 1.09004 * 110.06995 * 92.15195 * 13 12 10 40 40 H 1.08996 * 110.56369 * 330.30012 * 13 12 10 41 41 H 1.08999 * 110.45789 * 19.21754 * 16 14 13 42 42 H 1.08994 * 110.46121 * 256.64044 * 16 14 13 43 43 H 0.96999 * 120.00319 * 5.02647 * 21 20 18 44 44 H 1.09003 * 110.46875 * 160.25911 * 26 17 16 45 45 H 1.09003 * 110.46173 * 282.83645 * 26 17 16 46 46 H 1.09002 * 109.47495 * 302.42286 * 28 27 26 47 47 H 1.08998 * 109.47151 * 62.41684 * 28 27 26 48 48 H 1.09001 * 109.47237 * 182.41781 * 28 27 26 49 49 H 1.09004 * 110.06401 * 29.38436 * 29 12 10 50 50 H 1.08993 * 110.06092 * 267.86525 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3512 1.5250 0.0005 5 6 4.1991 0.4271 -0.0039 6 6 5.5674 0.6095 0.0025 7 6 6.1043 1.8867 0.0079 8 6 5.2769 2.9886 0.0074 9 6 3.8903 2.8185 0.0010 10 6 2.9986 3.9939 0.0010 11 8 1.9680 3.9750 -0.6439 12 7 3.3264 5.0884 0.7158 13 6 4.5913 5.3093 1.4568 14 6 4.2263 6.1966 2.6580 15 1 4.1974 5.6359 3.5923 16 6 5.2071 7.3882 2.7200 17 7 4.3483 8.5540 3.0417 18 6 4.6030 9.5781 3.9145 19 1 3.8877 10.3788 4.0309 20 6 5.7805 9.5870 4.6494 21 7 5.8019 10.1226 5.8516 22 14 7.3348 8.8390 3.9324 23 1 7.4456 7.4217 4.3614 24 1 8.5172 9.5964 4.4157 25 1 7.2772 8.9044 2.4499 26 6 3.1456 8.3445 2.1994 27 6 2.8555 6.8356 2.3082 28 6 1.7842 6.5290 3.3566 29 6 2.4982 6.2886 0.9165 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.7881 -0.5717 -0.0073 36 1 6.2234 -0.2486 0.0029 37 1 7.1761 2.0193 0.0125 38 1 5.6999 3.9824 0.0112 39 1 5.3134 5.8205 0.8201 40 1 5.0026 4.3613 1.8033 41 1 5.6961 7.5296 1.7561 42 1 5.9474 7.2320 3.5046 43 1 4.9802 10.4452 6.2535 44 1 2.3051 8.9217 2.5847 45 1 3.3531 8.6165 1.1644 46 1 2.1001 6.9195 4.3240 47 1 0.8450 6.9989 3.0645 48 1 1.6440 5.4505 3.4282 49 1 1.4414 6.0244 0.8786 50 1 2.7260 7.0321 0.1527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092244968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:56 Heat of formation + Delta-G solvation = -20.269861 kcal Electronic energy + Delta-G solvation = -31197.008271 eV Core-core repulsion = 27190.019913 eV Total energy + Delta-G solvation = -4006.988358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.95818 -41.04844 -39.52568 -38.36604 -36.68813 -34.62737 -33.26744 -32.89959 -32.02394 -31.62915 -30.53705 -28.13617 -27.37404 -27.02501 -25.16543 -24.44600 -23.23552 -22.71601 -22.36971 -20.89134 -20.31216 -19.26270 -18.94565 -18.17201 -17.43876 -17.22219 -17.09833 -16.62226 -16.33945 -16.02636 -15.87187 -15.59369 -15.23345 -15.11668 -14.93312 -14.47291 -14.41399 -14.29310 -14.12668 -13.85506 -13.53054 -13.42131 -13.31252 -12.98861 -12.93307 -12.85652 -12.68708 -12.66557 -12.45713 -12.13795 -12.00979 -11.93112 -11.79722 -11.70702 -11.60263 -11.46433 -11.11467 -10.88788 -10.57409 -10.03263 -9.78908 -9.22477 -9.17770 -8.64369 -5.31874 -0.05396 0.40916 1.42216 1.57715 1.69358 1.74860 1.93078 2.20503 2.59204 2.77308 2.98414 3.21035 3.27196 3.56208 3.72341 3.80105 3.84898 3.94748 4.01833 4.05585 4.13202 4.18069 4.19839 4.25939 4.34229 4.34876 4.39878 4.49848 4.58431 4.60766 4.67787 4.72005 4.78752 4.80754 4.84163 4.87840 4.88725 4.98010 5.03422 5.12482 5.15674 5.17862 5.21840 5.30828 5.34451 5.35207 5.48455 5.57493 5.77986 6.08665 6.37323 6.49040 6.81166 7.09151 7.46711 8.22458 8.86264 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.003139 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.958827 B = 8918.932195 C =10024.208616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.327 6.327 4 C 0.159 3.841 5 C -0.219 4.219 6 C -0.049 4.049 7 C -0.162 4.162 8 C -0.058 4.058 9 C -0.194 4.194 10 C 0.578 3.422 11 O -0.573 6.573 12 N -0.611 5.611 13 C 0.107 3.893 14 C -0.103 4.103 15 H 0.090 0.910 16 C 0.107 3.893 17 N -0.627 5.627 18 C -0.315 4.315 19 H 0.048 0.952 20 C -0.074 4.074 21 N -0.948 5.948 22 Si 1.090 2.910 23 H -0.269 1.269 24 H -0.311 1.311 25 H -0.262 1.262 26 C 0.140 3.860 27 C -0.076 4.076 28 C -0.115 4.115 29 C 0.126 3.874 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.147 0.853 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.250 0.750 44 H 0.046 0.954 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 -25.960 -13.666 29.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.240 6.240 4 C 0.112 3.888 5 C -0.237 4.237 6 C -0.067 4.067 7 C -0.180 4.180 8 C -0.076 4.076 9 C -0.198 4.198 10 C 0.369 3.631 11 O -0.453 6.453 12 N -0.343 5.343 13 C -0.015 4.015 14 C -0.124 4.124 15 H 0.109 0.891 16 C -0.018 4.018 17 N -0.352 5.352 18 C -0.442 4.442 19 H 0.066 0.934 20 C -0.268 4.268 21 N -0.590 5.590 22 Si 0.917 3.083 23 H -0.197 1.197 24 H -0.240 1.240 25 H -0.187 1.187 26 C 0.014 3.986 27 C -0.079 4.079 28 C -0.172 4.172 29 C 0.003 3.997 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.174 0.826 36 H 0.182 0.818 37 H 0.177 0.823 38 H 0.165 0.835 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.127 -25.984 -13.721 29.406 hybrid contribution -2.051 1.088 0.225 2.333 sum -3.178 -24.896 -13.496 28.497 Atomic orbital electron populations 1.21799 0.92274 1.04103 1.02558 1.23141 0.96629 0.80575 1.02755 1.86215 1.18956 1.31518 1.87325 1.19223 0.83199 0.93169 0.93241 1.21518 0.94757 0.97976 1.09462 1.21586 0.94092 0.98632 0.92361 1.21407 1.01470 0.91662 1.03442 1.21593 0.90073 1.01469 0.94493 1.19237 0.94574 0.90493 1.15455 1.18118 0.85092 0.81695 0.78186 1.90748 1.28003 1.82474 1.44086 1.48739 1.19317 1.16379 1.49914 1.22760 0.85978 1.00717 0.92039 1.22981 0.94862 0.95865 0.98660 0.89147 1.22394 0.93786 0.86734 0.98837 1.45510 1.17581 1.23732 1.48424 1.19831 1.05744 1.02806 1.15855 0.93379 1.26888 1.04067 1.01647 0.94245 1.71002 1.30621 1.44783 1.12588 0.83519 0.73117 0.75320 0.76299 1.19681 1.23989 1.18726 1.21920 0.89484 0.93196 0.94004 1.22121 0.95362 0.95923 0.94451 1.21525 0.97277 1.01004 0.97396 1.22014 0.95822 0.86338 0.95491 0.92760 0.87443 0.92716 0.90373 0.90284 0.82601 0.81808 0.82264 0.83539 0.88946 0.87937 0.92860 0.92983 0.94169 0.93548 0.93864 0.93737 0.91645 0.92325 0.90925 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.04 0.68 5.46 71.98 0.39 1.08 16 3 O -0.33 -8.62 8.85 -73.70 -0.65 -9.27 16 4 C 0.16 3.82 6.67 22.84 0.15 3.97 16 5 C -0.22 -3.44 9.03 22.34 0.20 -3.23 16 6 C -0.05 -0.58 10.03 22.30 0.22 -0.36 16 7 C -0.16 -2.18 10.02 22.24 0.22 -1.96 16 8 C -0.06 -1.10 7.79 22.52 0.18 -0.93 16 9 C -0.19 -5.03 5.54 -20.01 -0.11 -5.14 16 10 C 0.58 18.52 7.38 86.70 0.64 19.16 16 11 O -0.57 -22.63 16.33 12.08 0.20 -22.44 16 12 N -0.61 -17.68 3.34 -816.43 -2.73 -20.41 16 13 C 0.11 2.67 4.84 86.29 0.42 3.09 16 14 C -0.10 -3.23 3.71 -9.28 -0.03 -3.27 16 15 H 0.09 2.87 7.93 -2.39 -0.02 2.85 16 16 C 0.11 4.15 4.50 86.52 0.39 4.54 16 17 N -0.63 -29.30 3.34 -687.76 -2.30 -31.60 16 18 C -0.31 -17.85 10.56 84.03 0.89 -16.96 16 19 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 20 C -0.07 -4.30 5.45 84.86 0.46 -3.84 16 21 N -0.95 -59.87 13.70 21.65 0.30 -59.57 16 22 Si 1.09 51.00 25.03 68.60 1.72 52.72 16 23 H -0.27 -11.39 6.51 99.48 0.65 -10.74 16 24 H -0.31 -15.03 7.11 99.48 0.71 -14.32 16 25 H -0.26 -11.09 6.61 99.48 0.66 -10.43 16 26 C 0.14 5.33 6.36 86.38 0.55 5.88 16 27 C -0.08 -2.43 1.07 -50.82 -0.05 -2.49 16 28 C -0.11 -3.55 8.59 71.98 0.62 -2.93 16 29 C 0.13 3.75 6.21 86.50 0.54 4.29 16 30 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.94 7.65 -2.39 -0.02 0.93 16 34 H 0.08 0.93 7.67 -2.38 -0.02 0.91 16 35 H 0.16 1.57 6.30 -2.91 -0.02 1.56 16 36 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 37 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.15 2.43 5.78 -2.91 -0.02 2.41 16 39 H 0.09 2.03 6.69 -2.38 -0.02 2.01 16 40 H 0.10 2.15 6.11 -2.39 -0.01 2.14 16 41 H 0.05 1.89 6.79 -2.39 -0.02 1.87 16 42 H 0.05 2.16 3.76 -2.39 -0.01 2.15 16 43 H 0.25 15.90 8.73 -92.71 -0.81 15.09 16 44 H 0.05 1.82 7.90 -2.39 -0.02 1.80 16 45 H 0.04 1.55 7.16 -2.39 -0.02 1.54 16 46 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.07 2.24 7.69 -2.38 -0.02 2.22 16 50 H 0.08 2.17 7.10 -2.39 -0.02 2.16 16 Total: -1.00 -78.12 384.60 3.74 -74.38 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.80 Total: 16.73 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 6.41 Total: -0.54 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.73 Total: -111.58 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.45 Total: -31.71 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 1.72 Total: 52.72 kcal Total: -78.12 3.74 -74.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092244968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.107 kcal (2) G-P(sol) polarization free energy of solvation -78.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds