Wall clock time and date at job start Wed Apr 1 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47301 * 2 1 4 4 C 1.35900 * 117.00438 * 180.02562 * 3 2 1 5 5 C 1.38752 * 120.05119 * 0.02562 * 4 3 2 6 6 C 1.38128 * 119.94142 * 179.97438 * 5 4 3 7 7 C 1.38285 * 120.05545 * 359.75341 * 6 5 4 8 8 C 1.38246 * 120.11168 * 0.50243 * 7 6 5 9 9 C 1.50698 * 119.97229 * 179.76766 * 8 7 6 10 10 C 1.50703 * 109.47471 * 269.72531 * 9 8 7 11 11 O 1.21285 * 119.99538 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00235 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00036 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.56137 * 37.03487 * 13 12 10 15 15 C 1.54850 * 110.62667 * 160.10701 * 13 12 10 16 16 C 1.55845 * 103.44531 * 118.49130 * 15 13 12 17 17 H 1.08996 * 116.12803 * 159.14858 * 16 15 13 18 18 C 1.55847 * 105.06244 * 288.17522 * 16 15 13 19 19 C 1.54850 * 103.44591 * 71.82522 * 18 16 15 20 20 C 1.55844 * 103.44617 * 359.97438 * 19 18 16 21 21 H 1.09002 * 116.13024 * 159.15170 * 20 19 18 22 22 N 1.50232 * 101.04971 * 32.93869 * 20 19 18 23 23 C 1.36938 * 130.83915 * 126.05468 * 22 20 19 24 24 H 1.08003 * 120.00173 * 10.20936 * 23 22 20 25 25 C 1.38817 * 120.00238 * 190.20943 * 23 22 20 26 26 N 1.31617 * 119.99720 * 9.12158 * 25 23 22 27 27 Si 1.86801 * 120.00165 * 189.12717 * 25 23 22 28 28 H 1.48499 * 109.47160 * 84.98504 * 27 25 23 29 29 H 1.48497 * 109.46986 * 204.98515 * 27 25 23 30 30 H 1.48497 * 109.46892 * 324.98387 * 27 25 23 31 31 C 1.38160 * 120.05345 * 359.49340 * 8 7 6 32 32 H 1.09003 * 109.47106 * 299.99641 * 1 2 3 33 33 H 1.08999 * 109.47291 * 59.99244 * 1 2 3 34 34 H 1.08998 * 109.47501 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47058 * 240.00912 * 2 1 3 36 36 H 1.08994 * 109.47870 * 120.00342 * 2 1 3 37 37 H 1.07995 * 120.03254 * 0.02562 * 5 4 3 38 38 H 1.08003 * 119.96751 * 180.02562 * 6 5 4 39 39 H 1.08001 * 119.94369 * 180.26998 * 7 6 5 40 40 H 1.09009 * 109.47150 * 29.72419 * 9 8 7 41 41 H 1.08996 * 109.47136 * 149.72620 * 9 8 7 42 42 H 0.96996 * 119.99540 * 359.97438 * 12 10 9 43 43 H 1.09000 * 110.62435 * 236.97920 * 15 13 12 44 44 H 1.08994 * 110.62627 * 0.02562 * 15 13 12 45 45 H 1.09001 * 110.62583 * 190.31121 * 18 16 15 46 46 H 1.08998 * 110.62604 * 313.17830 * 18 16 15 47 47 H 1.09006 * 110.62571 * 241.51010 * 19 18 16 48 48 H 1.09001 * 110.63303 * 118.48878 * 19 18 16 49 49 H 0.96996 * 120.00207 * 180.02562 * 26 25 23 50 50 H 1.08001 * 120.02597 * 180.22827 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5689 0.6094 -0.0027 7 6 6.0961 1.8878 -0.0079 8 6 5.2551 2.9850 -0.0015 9 6 5.8331 4.3767 -0.0019 10 6 6.0269 4.8407 1.4188 11 8 5.7257 4.1126 2.3409 12 7 6.5358 6.0642 1.6647 13 6 6.7246 6.5149 3.0458 14 1 7.0470 5.6875 3.6779 15 6 7.7431 7.6799 3.1050 16 6 6.9092 8.8610 3.6867 17 1 7.4779 9.6712 4.1429 18 6 5.9447 9.2808 2.5368 19 6 4.9263 8.1159 2.4776 20 6 5.4145 7.1504 3.5994 21 1 4.6755 6.4463 3.9819 22 7 5.9682 8.1264 4.5983 23 6 5.6985 8.2945 5.9303 24 1 5.1074 7.5609 6.4584 25 6 6.1847 9.4079 6.6018 26 7 6.7484 10.3883 5.9285 27 14 6.0391 9.5147 8.4611 28 1 7.1866 8.8116 9.0887 29 1 6.0446 10.9403 8.8769 30 1 4.7702 8.8772 8.8956 31 6 3.8851 2.8066 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5137 -0.8901 36 1 1.8934 -0.5138 0.8899 37 1 3.7886 -0.5728 -0.0024 38 1 6.2280 -0.2461 -0.0039 39 1 7.1668 2.0293 -0.0131 40 1 6.7941 4.3709 -0.5164 41 1 5.1502 5.0536 -0.5152 42 1 6.7777 6.6459 0.9273 43 1 8.5720 7.4319 3.7679 44 1 8.1073 7.9225 2.1067 45 1 5.4429 10.2176 2.7793 46 1 6.4859 9.3692 1.5948 47 1 4.9619 7.6237 1.5056 48 1 3.9194 8.4748 2.6908 49 1 7.0884 11.1662 6.3976 50 1 3.2284 3.6641 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096621128.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:41 Heat of formation + Delta-G solvation = -5.330430 kcal Electronic energy + Delta-G solvation = -30025.883132 eV Core-core repulsion = 26019.542596 eV Total energy + Delta-G solvation = -4006.340535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.45290 -39.88104 -38.54833 -37.45436 -33.86449 -32.78569 -32.26087 -32.22187 -29.77929 -29.36280 -29.02747 -28.23842 -26.85963 -24.23477 -23.85006 -22.66823 -21.70784 -21.10044 -20.29328 -19.48325 -18.56423 -17.99284 -17.13689 -16.66531 -16.31489 -16.25577 -16.13419 -15.39066 -15.12539 -14.80311 -14.39484 -14.17482 -13.84918 -13.71069 -13.55363 -13.45958 -13.23348 -12.90784 -12.38995 -12.37062 -12.05099 -12.00931 -11.84964 -11.72999 -11.59503 -11.46812 -10.99171 -10.96871 -10.92821 -10.90525 -10.86440 -10.79790 -10.17921 -10.05942 -9.89683 -9.63961 -9.42204 -9.22248 -8.90248 -8.81674 -8.45977 -8.27622 -6.86549 -5.74546 -3.09221 1.19585 1.38369 2.91599 2.98388 3.40211 3.42171 3.46855 3.48286 3.82119 4.48187 4.51441 4.59930 4.60910 4.78970 4.85296 4.93883 5.01183 5.09782 5.19905 5.22917 5.27663 5.32988 5.38022 5.46233 5.46300 5.55856 5.61927 5.72628 5.83314 5.86351 5.92502 6.00712 6.09295 6.14242 6.18648 6.31124 6.31185 6.36122 6.48830 6.56661 6.61381 6.64639 6.70945 6.85120 7.00635 7.04383 7.28984 7.30858 7.56290 7.73740 7.88220 8.13993 8.56160 9.09965 9.73727 10.56873 11.38034 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.002326 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.746773 B =12036.230241 C =12849.259054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.130 3.870 5 C -0.212 4.212 6 C -0.080 4.080 7 C -0.143 4.143 8 C -0.021 4.021 9 C -0.105 4.105 10 C 0.509 3.491 11 O -0.532 6.532 12 N -0.714 5.714 13 C 0.130 3.870 14 H 0.081 0.919 15 C -0.143 4.143 16 C 0.160 3.840 17 H 0.141 0.859 18 C -0.131 4.131 19 C -0.130 4.130 20 C 0.127 3.873 21 H 0.085 0.915 22 N -0.589 5.589 23 C -0.213 4.213 24 H 0.077 0.923 25 C -0.010 4.010 26 N -0.919 5.919 27 Si 0.913 3.087 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 C -0.136 4.136 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.395 0.605 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.050 0.950 48 H 0.050 0.950 49 H 0.253 0.747 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.456 -16.852 -18.396 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.231 6.231 4 C 0.085 3.915 5 C -0.231 4.231 6 C -0.098 4.098 7 C -0.161 4.161 8 C -0.021 4.021 9 C -0.145 4.145 10 C 0.295 3.705 11 O -0.409 6.409 12 N -0.365 5.365 13 C 0.024 3.976 14 H 0.099 0.901 15 C -0.183 4.183 16 C 0.053 3.947 17 H 0.158 0.842 18 C -0.171 4.171 19 C -0.169 4.169 20 C 0.018 3.982 21 H 0.103 0.897 22 N -0.310 5.310 23 C -0.341 4.341 24 H 0.095 0.905 25 C -0.206 4.206 26 N -0.566 5.566 27 Si 0.744 3.256 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.208 1.208 31 C -0.155 4.155 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.229 0.771 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.064 0.936 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.834 -17.063 -17.396 24.667 hybrid contribution 0.084 0.102 0.595 0.609 sum -3.749 -16.960 -16.802 24.166 Atomic orbital electron populations 1.21777 0.92774 1.02767 1.03653 1.22757 0.95859 0.82131 1.01272 1.86073 1.19160 1.29126 1.88742 1.18883 0.82140 0.94033 0.96487 1.21176 0.94469 0.97780 1.09629 1.20849 0.94260 0.97105 0.97622 1.20877 0.99573 0.92026 1.03615 1.19043 0.92316 0.94025 0.96753 1.20726 1.03358 0.94586 0.95870 1.20349 0.77751 0.81775 0.90661 1.90738 1.49556 1.54493 1.46076 1.46227 1.64643 1.16230 1.09416 1.22580 0.98063 0.96489 0.80434 0.90107 1.23301 0.97699 0.97636 0.99661 1.23394 0.90171 0.93710 0.87446 0.84196 1.22988 0.98131 0.97979 0.97991 1.22883 0.98758 0.97443 0.97842 1.23190 0.93468 0.91986 0.89521 0.89729 1.46447 1.44101 1.35532 1.04872 1.19026 1.28683 1.04012 0.82353 0.90481 1.24746 1.02043 0.95639 0.98198 1.69659 1.45289 1.08069 1.33626 0.86101 0.77823 0.76676 0.84986 1.21596 1.21749 1.20753 1.20223 0.94525 0.94957 1.05767 0.91376 0.91536 0.90446 0.92188 0.92062 0.85812 0.85892 0.86050 0.87909 0.87883 0.77096 0.91781 0.92544 0.92387 0.93829 0.93153 0.93130 0.93647 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.45 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.79 10.14 -19.43 -0.20 -3.98 16 4 C 0.13 1.62 6.69 -39.22 -0.26 1.36 16 5 C -0.21 -2.30 9.04 -39.43 -0.36 -2.66 16 6 C -0.08 -0.85 10.04 -39.60 -0.40 -1.24 16 7 C -0.14 -1.62 9.70 -39.56 -0.38 -2.00 16 8 C -0.02 -0.25 4.37 -104.65 -0.46 -0.71 16 9 C -0.11 -1.09 5.83 -29.03 -0.17 -1.26 16 10 C 0.51 7.50 7.82 -10.99 -0.09 7.42 16 11 O -0.53 -10.36 15.76 5.55 0.09 -10.27 16 12 N -0.71 -10.12 3.63 -51.43 -0.19 -10.30 16 13 C 0.13 2.40 3.07 -65.47 -0.20 2.20 16 14 H 0.08 1.68 7.70 -51.93 -0.40 1.28 16 15 C -0.14 -2.63 6.20 -24.24 -0.15 -2.78 16 16 C 0.16 3.57 4.63 -62.82 -0.29 3.28 16 17 H 0.14 3.58 5.89 -51.93 -0.31 3.27 16 18 C -0.13 -2.56 6.44 -24.24 -0.16 -2.72 16 19 C -0.13 -2.43 6.33 -24.24 -0.15 -2.59 16 20 C 0.13 2.71 5.34 -62.84 -0.34 2.37 16 21 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 22 N -0.59 -14.78 2.97 -145.88 -0.43 -15.22 16 23 C -0.21 -5.94 10.55 -15.06 -0.16 -6.10 16 24 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 25 C -0.01 -0.29 5.46 -17.43 -0.10 -0.38 16 26 N -0.92 -26.27 10.75 55.49 0.60 -25.68 16 27 Si 0.91 22.21 29.56 -169.99 -5.03 17.19 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 31 C -0.14 -1.76 9.64 -39.44 -0.38 -2.14 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 36 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 37 H 0.12 1.05 6.30 -52.49 -0.33 0.72 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 40 H 0.10 0.78 8.08 -51.92 -0.42 0.36 16 41 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 42 H 0.39 4.41 8.02 -40.82 -0.33 4.08 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 0.86 7.34 -51.93 -0.38 0.47 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 47 H 0.05 0.79 6.49 -51.93 -0.34 0.45 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 50 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -33.32 399.41 -10.49 -43.80 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.90 Total: 6.36 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -3.45 Total: -7.91 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.02 Total: -51.20 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.11 Total: -14.26 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.32 -10.49 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096621128.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.472 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds