Wall clock time and date at job start Wed Apr 1 2020 02:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47301 * 2 1 4 4 C 1.35900 * 117.00438 * 180.02562 * 3 2 1 5 5 C 1.38752 * 120.05119 * 0.02562 * 4 3 2 6 6 C 1.38128 * 119.94142 * 179.97438 * 5 4 3 7 7 C 1.38285 * 120.05545 * 359.75341 * 6 5 4 8 8 C 1.38246 * 120.11168 * 0.50243 * 7 6 5 9 9 C 1.50698 * 119.97229 * 179.76766 * 8 7 6 10 10 C 1.50703 * 109.47471 * 269.72531 * 9 8 7 11 11 O 1.21285 * 119.99538 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00235 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00036 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.56137 * 37.03487 * 13 12 10 15 15 C 1.54850 * 110.62667 * 160.10701 * 13 12 10 16 16 C 1.55845 * 103.44531 * 118.49130 * 15 13 12 17 17 H 1.08996 * 116.12803 * 159.14858 * 16 15 13 18 18 C 1.55847 * 105.06244 * 288.17522 * 16 15 13 19 19 C 1.54850 * 103.44591 * 71.82522 * 18 16 15 20 20 C 1.55844 * 103.44617 * 359.97438 * 19 18 16 21 21 H 1.09002 * 116.13024 * 159.15170 * 20 19 18 22 22 N 1.50232 * 101.04971 * 32.93869 * 20 19 18 23 23 C 1.36938 * 130.83915 * 126.05468 * 22 20 19 24 24 H 1.08003 * 120.00173 * 10.20936 * 23 22 20 25 25 C 1.38817 * 120.00238 * 190.20943 * 23 22 20 26 26 N 1.31617 * 119.99720 * 9.12158 * 25 23 22 27 27 Si 1.86801 * 120.00165 * 189.12717 * 25 23 22 28 28 H 1.48499 * 109.47160 * 84.98504 * 27 25 23 29 29 H 1.48497 * 109.46986 * 204.98515 * 27 25 23 30 30 H 1.48497 * 109.46892 * 324.98387 * 27 25 23 31 31 C 1.38160 * 120.05345 * 359.49340 * 8 7 6 32 32 H 1.09003 * 109.47106 * 299.99641 * 1 2 3 33 33 H 1.08999 * 109.47291 * 59.99244 * 1 2 3 34 34 H 1.08998 * 109.47501 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47058 * 240.00912 * 2 1 3 36 36 H 1.08994 * 109.47870 * 120.00342 * 2 1 3 37 37 H 1.07995 * 120.03254 * 0.02562 * 5 4 3 38 38 H 1.08003 * 119.96751 * 180.02562 * 6 5 4 39 39 H 1.08001 * 119.94369 * 180.26998 * 7 6 5 40 40 H 1.09009 * 109.47150 * 29.72419 * 9 8 7 41 41 H 1.08996 * 109.47136 * 149.72620 * 9 8 7 42 42 H 0.96996 * 119.99540 * 359.97438 * 12 10 9 43 43 H 1.09000 * 110.62435 * 236.97920 * 15 13 12 44 44 H 1.08994 * 110.62627 * 0.02562 * 15 13 12 45 45 H 1.09001 * 110.62583 * 190.31121 * 18 16 15 46 46 H 1.08998 * 110.62604 * 313.17830 * 18 16 15 47 47 H 1.09006 * 110.62571 * 241.51010 * 19 18 16 48 48 H 1.09001 * 110.63303 * 118.48878 * 19 18 16 49 49 H 0.96996 * 120.00207 * 180.02562 * 26 25 23 50 50 H 1.08001 * 120.02597 * 180.22827 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5689 0.6094 -0.0027 7 6 6.0961 1.8878 -0.0079 8 6 5.2551 2.9850 -0.0015 9 6 5.8331 4.3767 -0.0019 10 6 6.0269 4.8407 1.4188 11 8 5.7257 4.1126 2.3409 12 7 6.5358 6.0642 1.6647 13 6 6.7246 6.5149 3.0458 14 1 7.0470 5.6875 3.6779 15 6 7.7431 7.6799 3.1050 16 6 6.9092 8.8610 3.6867 17 1 7.4779 9.6712 4.1429 18 6 5.9447 9.2808 2.5368 19 6 4.9263 8.1159 2.4776 20 6 5.4145 7.1504 3.5994 21 1 4.6755 6.4463 3.9819 22 7 5.9682 8.1264 4.5983 23 6 5.6985 8.2945 5.9303 24 1 5.1074 7.5609 6.4584 25 6 6.1847 9.4079 6.6018 26 7 6.7484 10.3883 5.9285 27 14 6.0391 9.5147 8.4611 28 1 7.1866 8.8116 9.0887 29 1 6.0446 10.9403 8.8769 30 1 4.7702 8.8772 8.8956 31 6 3.8851 2.8066 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5137 -0.8901 36 1 1.8934 -0.5138 0.8899 37 1 3.7886 -0.5728 -0.0024 38 1 6.2280 -0.2461 -0.0039 39 1 7.1668 2.0293 -0.0131 40 1 6.7941 4.3709 -0.5164 41 1 5.1502 5.0536 -0.5152 42 1 6.7777 6.6459 0.9273 43 1 8.5720 7.4319 3.7679 44 1 8.1073 7.9225 2.1067 45 1 5.4429 10.2176 2.7793 46 1 6.4859 9.3692 1.5948 47 1 4.9619 7.6237 1.5056 48 1 3.9194 8.4748 2.6908 49 1 7.0884 11.1662 6.3976 50 1 3.2284 3.6641 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096621128.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:40 Heat of formation + Delta-G solvation = -24.815542 kcal Electronic energy + Delta-G solvation = -30026.728069 eV Core-core repulsion = 26019.542596 eV Total energy + Delta-G solvation = -4007.185473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.55756 -41.04011 -39.84013 -38.38791 -35.39839 -34.21799 -33.56155 -32.88794 -31.03271 -30.80403 -30.49983 -29.58407 -28.09219 -26.07550 -24.62539 -23.50309 -22.98039 -22.33707 -21.55527 -21.02296 -20.13632 -19.02408 -18.71807 -17.97072 -17.07837 -17.03024 -16.97014 -16.84478 -16.69686 -16.38758 -15.93095 -15.49136 -15.11388 -14.82056 -14.41578 -14.32048 -14.09206 -14.04145 -13.92306 -13.46191 -13.39832 -13.21425 -12.91429 -12.82415 -12.80047 -12.76734 -12.62610 -12.54221 -12.37745 -12.33271 -11.98674 -11.91153 -11.69795 -11.63765 -11.59196 -11.29770 -10.92577 -10.82199 -10.73041 -9.92663 -9.75727 -9.11547 -8.82953 -7.85135 -5.20452 0.34859 0.53385 1.44417 1.46118 1.53711 1.78089 2.21630 2.33106 2.50489 2.89608 3.30286 3.53529 3.69853 3.88384 3.92665 4.03783 4.07274 4.10291 4.14734 4.17248 4.22034 4.30695 4.35562 4.42574 4.44771 4.49943 4.54188 4.63650 4.68472 4.72618 4.74192 4.82232 4.91397 4.92014 5.00699 5.08467 5.11152 5.15643 5.19103 5.27183 5.34850 5.37185 5.48382 5.49829 5.59310 5.64977 5.78922 5.86446 5.88926 6.21723 6.49851 6.74387 7.02521 7.44436 7.66888 8.55832 9.25140 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.002326 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.746773 B =12036.230241 C =12849.259054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.339 6.339 4 C 0.111 3.889 5 C -0.216 4.216 6 C -0.085 4.085 7 C -0.154 4.154 8 C -0.035 4.035 9 C -0.094 4.094 10 C 0.509 3.491 11 O -0.585 6.585 12 N -0.699 5.699 13 C 0.151 3.849 14 H 0.051 0.949 15 C -0.126 4.126 16 C 0.144 3.856 17 H 0.106 0.894 18 C -0.120 4.120 19 C -0.116 4.116 20 C 0.115 3.885 21 H 0.058 0.942 22 N -0.618 5.618 23 C -0.229 4.229 24 H 0.065 0.935 25 C -0.060 4.060 26 N -0.939 5.939 27 Si 0.973 3.027 28 H -0.287 1.287 29 H -0.290 1.290 30 H -0.278 1.278 31 C -0.161 4.161 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.417 0.583 43 H 0.050 0.950 44 H 0.103 0.897 45 H 0.029 0.971 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.033 0.967 49 H 0.249 0.751 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 -18.044 -21.139 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.253 6.253 4 C 0.066 3.934 5 C -0.235 4.235 6 C -0.103 4.103 7 C -0.172 4.172 8 C -0.035 4.035 9 C -0.133 4.133 10 C 0.297 3.703 11 O -0.464 6.464 12 N -0.352 5.352 13 C 0.043 3.957 14 H 0.069 0.931 15 C -0.165 4.165 16 C 0.038 3.962 17 H 0.124 0.876 18 C -0.159 4.159 19 C -0.155 4.155 20 C 0.008 3.992 21 H 0.077 0.923 22 N -0.340 5.340 23 C -0.358 4.358 24 H 0.083 0.917 25 C -0.253 4.253 26 N -0.588 5.588 27 Si 0.802 3.198 28 H -0.214 1.214 29 H -0.217 1.217 30 H -0.203 1.203 31 C -0.180 4.180 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.148 0.852 42 H 0.255 0.745 43 H 0.069 0.931 44 H 0.121 0.879 45 H 0.048 0.952 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.052 0.948 49 H 0.059 0.941 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.006 -18.258 -20.209 27.400 hybrid contribution -0.227 0.366 1.440 1.503 sum -3.234 -17.891 -18.768 26.130 Atomic orbital electron populations 1.21813 0.91655 1.04201 1.03037 1.23040 0.96810 0.80834 1.02175 1.86049 1.19123 1.31351 1.88824 1.19144 0.82684 0.94585 0.97028 1.21470 0.94689 0.98362 1.08968 1.21243 0.94541 0.97934 0.96564 1.21214 1.00497 0.92226 1.03305 1.19297 0.92095 0.95284 0.96843 1.20768 1.05908 0.93928 0.92717 1.21147 0.76080 0.80997 0.92053 1.90731 1.51572 1.55917 1.48219 1.45962 1.64485 1.16679 1.08068 1.21972 0.96040 0.95281 0.82392 0.93071 1.23132 0.96449 0.95393 1.01562 1.23368 0.90808 0.94118 0.87895 0.87607 1.22887 0.97586 0.96590 0.98855 1.22795 0.97559 0.96541 0.98602 1.23318 0.94468 0.91775 0.89687 0.92335 1.46709 1.45532 1.37028 1.04777 1.19222 1.28450 1.03814 0.84360 0.91693 1.25437 1.02427 0.95548 1.01914 1.69846 1.46065 1.08230 1.34614 0.85182 0.77736 0.76402 0.80529 1.21389 1.21655 1.20350 1.20423 0.95265 0.95245 1.07076 0.92471 0.91644 0.87964 0.90591 0.91725 0.83749 0.83299 0.84337 0.84149 0.85249 0.74518 0.93101 0.87914 0.95209 0.89117 0.89062 0.94771 0.94121 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.71 5.46 71.98 0.39 1.10 16 3 O -0.34 -8.10 10.14 -92.43 -0.94 -9.04 16 4 C 0.11 2.73 6.69 22.51 0.15 2.88 16 5 C -0.22 -4.41 9.04 22.37 0.20 -4.20 16 6 C -0.08 -1.61 10.04 22.25 0.22 -1.39 16 7 C -0.15 -3.16 9.70 22.28 0.22 -2.95 16 8 C -0.03 -0.78 4.37 -19.88 -0.09 -0.86 16 9 C -0.09 -1.61 5.83 29.10 0.17 -1.44 16 10 C 0.51 13.82 7.82 87.66 0.69 14.51 16 11 O -0.58 -22.60 15.76 -3.05 -0.05 -22.65 16 12 N -0.70 -17.56 3.63 -435.02 -1.58 -19.14 16 13 C 0.15 5.39 3.07 46.59 0.14 5.54 16 14 H 0.05 2.16 7.70 -2.39 -0.02 2.14 16 15 C -0.13 -4.39 6.20 32.21 0.20 -4.19 16 16 C 0.14 6.42 4.63 46.24 0.21 6.64 16 17 H 0.11 5.53 5.89 -2.39 -0.01 5.51 16 18 C -0.12 -4.46 6.44 32.21 0.21 -4.25 16 19 C -0.12 -4.16 6.33 32.21 0.20 -3.95 16 20 C 0.12 4.97 5.34 46.21 0.25 5.21 16 21 H 0.06 2.77 8.14 -2.39 -0.02 2.76 16 22 N -0.62 -31.92 2.97 -615.45 -1.83 -33.75 16 23 C -0.23 -13.32 10.55 84.03 0.89 -12.44 16 24 H 0.07 3.79 7.85 -2.91 -0.02 3.76 16 25 C -0.06 -3.43 5.46 84.86 0.46 -2.96 16 26 N -0.94 -55.24 10.75 21.65 0.23 -55.01 16 27 Si 0.97 46.92 29.56 68.60 2.03 48.94 16 28 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 29 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 30 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 31 C -0.16 -4.11 9.64 22.36 0.22 -3.89 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.90 7.66 -2.38 -0.02 0.88 16 36 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 37 H 0.14 2.17 6.30 -2.91 -0.02 2.16 16 38 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 40 H 0.14 1.39 8.08 -2.38 -0.02 1.37 16 41 H 0.13 1.58 8.08 -2.39 -0.02 1.56 16 42 H 0.42 7.01 8.02 -92.71 -0.74 6.27 16 43 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.10 2.62 7.34 -2.39 -0.02 2.60 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.09 2.52 7.82 -2.39 -0.02 2.50 16 47 H 0.09 2.51 6.49 -2.38 -0.02 2.50 16 48 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 50 H 0.12 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -78.09 399.41 3.54 -74.55 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.20 Total: 23.80 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 5.47 Total: -7.71 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.18 Total: -107.90 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.98 Total: -31.69 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -78.09 3.54 -74.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096621128.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.737 kcal (2) G-P(sol) polarization free energy of solvation -78.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds