Wall clock time and date at job start Wed Apr 1 2020 02:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35897 * 117.00093 * 179.97438 * 3 2 1 5 5 C 1.38727 * 120.05804 * 359.72434 * 4 3 2 6 6 C 1.38147 * 119.94705 * 179.69639 * 5 4 3 7 7 C 1.38269 * 120.05314 * 0.60432 * 6 5 4 8 8 C 1.50697 * 119.94546 * 179.69741 * 7 6 5 9 9 C 1.50697 * 109.47116 * 269.97385 * 8 7 6 10 10 O 1.21285 * 120.00085 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00297 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00303 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.55866 * 34.30016 * 12 11 9 14 14 C 1.54849 * 110.62741 * 271.39813 * 12 11 9 15 15 C 1.55841 * 103.44934 * 241.51128 * 14 12 11 16 16 H 1.08998 * 115.56049 * 158.81079 * 15 14 12 17 17 C 1.55846 * 105.06379 * 288.17924 * 15 14 12 18 18 C 1.55153 * 103.50610 * 71.74126 * 17 15 14 19 19 C 1.55846 * 103.41445 * 0.06154 * 18 17 15 20 20 H 1.08999 * 116.13175 * 159.23507 * 19 18 17 21 21 N 1.50242 * 101.05146 * 32.93839 * 15 14 12 22 22 C 1.36934 * 130.84212 * 126.03517 * 21 15 14 23 23 H 1.07997 * 119.99912 * 179.97438 * 22 21 15 24 24 C 1.38810 * 119.99816 * 359.97438 * 22 21 15 25 25 N 1.31618 * 120.00003 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00102 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47312 * 90.00204 * 26 24 22 28 28 H 1.48501 * 109.47448 * 210.00053 * 26 24 22 29 29 H 1.48497 * 109.47044 * 330.00046 * 26 24 22 30 30 C 1.38267 * 120.11169 * 359.67296 * 7 6 5 31 31 C 1.38148 * 120.05471 * 0.02597 * 30 7 6 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 34 34 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 35 35 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 36 36 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 37 37 H 1.08001 * 120.02694 * 359.97438 * 5 4 3 38 38 H 1.08001 * 119.97602 * 180.27559 * 6 5 4 39 39 H 1.08998 * 109.47171 * 29.97536 * 8 7 6 40 40 H 1.08998 * 109.47044 * 149.97448 * 8 7 6 41 41 H 0.97006 * 119.99474 * 0.02562 * 11 9 8 42 42 H 1.09002 * 110.62588 * 0.02562 * 14 12 11 43 43 H 1.09004 * 110.62545 * 123.01685 * 14 12 11 44 44 H 1.09004 * 110.62690 * 190.31444 * 17 15 14 45 45 H 1.09007 * 110.62346 * 313.32991 * 17 15 14 46 46 H 1.09001 * 110.57266 * 241.62057 * 18 17 15 47 47 H 1.08995 * 110.85104 * 118.64295 * 18 17 15 48 48 H 0.97004 * 120.00099 * 179.97438 * 25 24 22 49 49 H 1.07995 * 119.97490 * 180.02562 * 30 7 6 50 50 H 1.08002 * 120.03076 * 179.97438 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4261 0.0068 6 6 5.5690 0.6097 0.0010 7 6 6.0962 1.8879 0.0016 8 6 7.5902 2.0853 0.0021 9 6 8.0877 2.1514 1.4231 10 8 7.3060 2.0478 2.3447 11 7 9.4013 2.3246 1.6699 12 6 9.8849 2.3882 3.0513 13 1 9.2983 1.7307 3.6929 14 6 9.8426 3.8439 3.5776 15 6 11.3359 4.1588 3.8932 16 1 11.5951 5.2167 3.9332 17 6 11.6658 3.3226 5.1663 18 6 11.7065 1.8633 4.6408 19 6 11.3971 2.0175 3.1212 20 1 11.7088 1.1917 2.4816 21 7 12.0305 3.3536 2.8319 22 6 12.9554 3.7206 1.8911 23 1 13.3459 2.9860 1.2025 24 6 13.3908 5.0368 1.8225 25 7 12.9152 5.9320 2.6620 26 14 14.6519 5.5377 0.5387 27 1 13.9540 5.9651 -0.7004 28 1 15.4688 6.6630 1.0598 29 1 15.5355 4.3832 0.2360 30 6 5.2551 2.9852 0.0011 31 6 3.8851 2.8069 0.0006 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 0.5139 0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.8934 -0.5138 -0.8899 37 1 3.7884 -0.5726 0.0117 38 1 6.2282 -0.2459 0.0014 39 1 8.0672 1.2506 -0.5114 40 1 7.8340 3.0152 -0.5117 41 1 10.0265 2.4070 0.9328 42 1 9.4613 4.5184 2.8109 43 1 9.2372 3.9079 4.4818 44 1 12.6341 3.6114 5.5752 45 1 10.8819 3.4376 5.9150 46 1 10.9418 1.2590 5.1289 47 1 12.6933 1.4249 4.7892 48 1 13.2198 6.8517 2.6143 49 1 5.6693 3.9826 0.0011 50 1 3.2284 3.6643 0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098331770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:49 Heat of formation + Delta-G solvation = -11.135847 kcal Electronic energy + Delta-G solvation = -29819.428667 eV Core-core repulsion = 25812.836390 eV Total energy + Delta-G solvation = -4006.592277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.36611 -39.69093 -38.54829 -37.42213 -33.69114 -32.77874 -32.50306 -31.42757 -30.94592 -29.10383 -28.89013 -28.03666 -26.45929 -24.27270 -24.16613 -22.39400 -21.81658 -20.94535 -19.83696 -19.64520 -18.64091 -18.40610 -17.00913 -16.64579 -16.32291 -16.17173 -16.04132 -15.16089 -14.86376 -14.69911 -14.38351 -14.01907 -13.89946 -13.62277 -13.56416 -13.43262 -13.30163 -12.93705 -12.81810 -12.14695 -12.02950 -11.99124 -11.88173 -11.72719 -11.55985 -11.18196 -11.11613 -10.94149 -10.91914 -10.91341 -10.83575 -10.50348 -10.36415 -10.11244 -9.91406 -9.64465 -9.23660 -9.14292 -9.02070 -8.97280 -8.40260 -8.12579 -6.95934 -5.75760 -3.14844 1.32314 1.36546 3.00456 3.04566 3.34526 3.39758 3.42090 3.53174 3.93938 4.38917 4.58147 4.58999 4.73933 4.78438 4.80648 4.91762 5.11982 5.13367 5.22596 5.26856 5.31800 5.37018 5.43556 5.51357 5.56426 5.65138 5.66377 5.70767 5.71953 5.87165 5.98609 6.06242 6.12327 6.15044 6.21158 6.28500 6.32413 6.43169 6.50549 6.59870 6.61155 6.70935 6.75999 6.83422 6.95953 7.15749 7.29820 7.33850 7.45419 7.78467 8.05806 8.16235 8.69927 9.05739 9.68855 10.50386 11.33137 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.002191 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.683937 B =12776.202294 C =13515.258140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.123 3.877 5 C -0.207 4.207 6 C -0.066 4.066 7 C -0.093 4.093 8 C -0.101 4.101 9 C 0.509 3.491 10 O -0.545 6.545 11 N -0.708 5.708 12 C 0.130 3.870 13 H 0.077 0.923 14 C -0.142 4.142 15 C 0.154 3.846 16 H 0.153 0.847 17 C -0.138 4.138 18 C -0.127 4.127 19 C 0.124 3.876 20 H 0.087 0.913 21 N -0.592 5.592 22 C -0.213 4.213 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.915 3.085 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.283 1.283 30 C -0.065 4.065 31 C -0.150 4.150 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.402 0.598 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.048 0.952 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.254 0.746 49 H 0.128 0.872 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.399 -11.186 -5.634 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.079 3.921 5 C -0.226 4.226 6 C -0.084 4.084 7 C -0.094 4.094 8 C -0.141 4.141 9 C 0.295 3.705 10 O -0.423 6.423 11 N -0.357 5.357 12 C 0.024 3.976 13 H 0.095 0.905 14 C -0.183 4.183 15 C 0.047 3.953 16 H 0.170 0.830 17 C -0.178 4.178 18 C -0.167 4.167 19 C 0.016 3.984 20 H 0.105 0.895 21 N -0.313 5.313 22 C -0.341 4.341 23 H 0.096 0.904 24 C -0.207 4.207 25 N -0.567 5.567 26 Si 0.746 3.254 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 C -0.083 4.083 31 C -0.169 4.169 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.236 0.764 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.146 0.854 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.889 -10.901 -5.125 21.566 hybrid contribution 1.075 0.027 -0.922 1.417 sum -16.814 -10.874 -6.047 20.917 Atomic orbital electron populations 1.21774 0.92843 1.02770 1.03507 1.22753 0.95760 0.82205 1.01375 1.86049 1.19303 1.29089 1.88879 1.18952 0.81995 0.94230 0.96969 1.21124 0.94233 0.97799 1.09464 1.20750 0.94229 0.96602 0.96853 1.19219 0.94023 0.93278 1.02881 1.20641 0.92960 1.04937 0.95594 1.20446 0.82562 0.76688 0.90832 1.90683 1.55152 1.50215 1.46231 1.46034 1.07469 1.72465 1.09777 1.22588 0.95872 0.97757 0.81396 0.90542 1.23450 1.00132 0.95230 0.99456 1.23753 0.87110 0.99465 0.84926 0.83038 1.23105 1.00059 0.95606 0.98980 1.22909 0.99950 0.97254 0.96618 1.23245 0.90159 0.90447 0.94539 0.89455 1.46643 1.46173 1.02530 1.35909 1.18991 1.14141 0.93499 1.07495 0.90434 1.24708 1.00596 0.95857 0.99549 1.69464 1.46307 1.02464 1.38471 0.86064 0.80763 0.77932 0.80643 1.21722 1.21731 1.20845 1.20829 0.92092 0.98745 0.96610 1.20358 0.95092 0.94723 1.06711 0.90446 0.91574 0.91498 0.92053 0.92144 0.85764 0.86002 0.88345 0.88057 0.76356 0.92291 0.92960 0.92635 0.93354 0.93047 0.92471 0.93547 0.85389 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.43 5.46 37.16 0.20 0.64 16 3 O -0.32 -3.67 10.14 -19.42 -0.20 -3.87 16 4 C 0.12 1.54 6.69 -39.22 -0.26 1.28 16 5 C -0.21 -2.41 9.04 -39.43 -0.36 -2.76 16 6 C -0.07 -0.81 9.69 -39.60 -0.38 -1.19 16 7 C -0.09 -1.21 4.37 -104.60 -0.46 -1.67 16 8 C -0.10 -1.24 5.83 -29.04 -0.17 -1.41 16 9 C 0.51 8.28 7.82 -10.99 -0.09 8.20 16 10 O -0.55 -10.84 15.72 5.55 0.09 -10.75 16 11 N -0.71 -11.82 5.08 -51.40 -0.26 -12.08 16 12 C 0.13 2.42 2.75 -65.43 -0.18 2.24 16 13 H 0.08 1.45 7.29 -51.93 -0.38 1.07 16 14 C -0.14 -2.92 6.23 -24.24 -0.15 -3.07 16 15 C 0.15 3.49 4.72 -62.80 -0.30 3.19 16 16 H 0.15 3.95 5.52 -51.93 -0.29 3.66 16 17 C -0.14 -2.73 6.45 -24.07 -0.16 -2.89 16 18 C -0.13 -2.30 6.46 -24.07 -0.16 -2.46 16 19 C 0.12 2.39 5.07 -62.54 -0.32 2.07 16 20 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 21 N -0.59 -13.79 2.99 -145.48 -0.44 -14.23 16 22 C -0.21 -5.47 10.59 -15.06 -0.16 -5.63 16 23 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.92 -25.53 10.46 55.49 0.58 -24.95 16 26 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 C -0.06 -0.83 9.69 -39.60 -0.38 -1.22 16 31 C -0.15 -1.89 9.99 -39.43 -0.39 -2.28 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 36 H 0.06 0.41 7.68 -51.93 -0.40 0.02 16 37 H 0.12 1.14 6.30 -52.49 -0.33 0.81 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 41 H 0.40 6.38 8.64 -40.82 -0.35 6.03 16 42 H 0.06 1.31 7.98 -51.93 -0.41 0.89 16 43 H 0.05 1.02 7.82 -51.93 -0.41 0.61 16 44 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.86 7.82 -51.92 -0.41 0.46 16 46 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 50 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 401.74 15.07 6.05 6.05 Total: -1.00 -31.24 401.74 -10.58 -41.82 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.97 Total: 9.79 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -3.42 Total: -7.89 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.12 Total: -51.27 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.11 Total: -14.62 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.24 -10.58 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098331770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.682 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds