Wall clock time and date at job start Wed Apr 1 2020 02:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35897 * 117.00093 * 179.97438 * 3 2 1 5 5 C 1.38727 * 120.05804 * 359.72434 * 4 3 2 6 6 C 1.38147 * 119.94705 * 179.69639 * 5 4 3 7 7 C 1.38269 * 120.05314 * 0.60432 * 6 5 4 8 8 C 1.50697 * 119.94546 * 179.69741 * 7 6 5 9 9 C 1.50697 * 109.47116 * 269.97385 * 8 7 6 10 10 O 1.21285 * 120.00085 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00297 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00303 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.55866 * 34.30016 * 12 11 9 14 14 C 1.54849 * 110.62741 * 271.39813 * 12 11 9 15 15 C 1.55841 * 103.44934 * 241.51128 * 14 12 11 16 16 H 1.08998 * 115.56049 * 158.81079 * 15 14 12 17 17 C 1.55846 * 105.06379 * 288.17924 * 15 14 12 18 18 C 1.55153 * 103.50610 * 71.74126 * 17 15 14 19 19 C 1.55846 * 103.41445 * 0.06154 * 18 17 15 20 20 H 1.08999 * 116.13175 * 159.23507 * 19 18 17 21 21 N 1.50242 * 101.05146 * 32.93839 * 15 14 12 22 22 C 1.36934 * 130.84212 * 126.03517 * 21 15 14 23 23 H 1.07997 * 119.99912 * 179.97438 * 22 21 15 24 24 C 1.38810 * 119.99816 * 359.97438 * 22 21 15 25 25 N 1.31618 * 120.00003 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00102 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47312 * 90.00204 * 26 24 22 28 28 H 1.48501 * 109.47448 * 210.00053 * 26 24 22 29 29 H 1.48497 * 109.47044 * 330.00046 * 26 24 22 30 30 C 1.38267 * 120.11169 * 359.67296 * 7 6 5 31 31 C 1.38148 * 120.05471 * 0.02597 * 30 7 6 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 34 34 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 35 35 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 36 36 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 37 37 H 1.08001 * 120.02694 * 359.97438 * 5 4 3 38 38 H 1.08001 * 119.97602 * 180.27559 * 6 5 4 39 39 H 1.08998 * 109.47171 * 29.97536 * 8 7 6 40 40 H 1.08998 * 109.47044 * 149.97448 * 8 7 6 41 41 H 0.97006 * 119.99474 * 0.02562 * 11 9 8 42 42 H 1.09002 * 110.62588 * 0.02562 * 14 12 11 43 43 H 1.09004 * 110.62545 * 123.01685 * 14 12 11 44 44 H 1.09004 * 110.62690 * 190.31444 * 17 15 14 45 45 H 1.09007 * 110.62346 * 313.32991 * 17 15 14 46 46 H 1.09001 * 110.57266 * 241.62057 * 18 17 15 47 47 H 1.08995 * 110.85104 * 118.64295 * 18 17 15 48 48 H 0.97004 * 120.00099 * 179.97438 * 25 24 22 49 49 H 1.07995 * 119.97490 * 180.02562 * 30 7 6 50 50 H 1.08002 * 120.03076 * 179.97438 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4261 0.0068 6 6 5.5690 0.6097 0.0010 7 6 6.0962 1.8879 0.0016 8 6 7.5902 2.0853 0.0021 9 6 8.0877 2.1514 1.4231 10 8 7.3060 2.0478 2.3447 11 7 9.4013 2.3246 1.6699 12 6 9.8849 2.3882 3.0513 13 1 9.2983 1.7307 3.6929 14 6 9.8426 3.8439 3.5776 15 6 11.3359 4.1588 3.8932 16 1 11.5951 5.2167 3.9332 17 6 11.6658 3.3226 5.1663 18 6 11.7065 1.8633 4.6408 19 6 11.3971 2.0175 3.1212 20 1 11.7088 1.1917 2.4816 21 7 12.0305 3.3536 2.8319 22 6 12.9554 3.7206 1.8911 23 1 13.3459 2.9860 1.2025 24 6 13.3908 5.0368 1.8225 25 7 12.9152 5.9320 2.6620 26 14 14.6519 5.5377 0.5387 27 1 13.9540 5.9651 -0.7004 28 1 15.4688 6.6630 1.0598 29 1 15.5355 4.3832 0.2360 30 6 5.2551 2.9852 0.0011 31 6 3.8851 2.8069 0.0006 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 0.5139 0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.8934 -0.5138 -0.8899 37 1 3.7884 -0.5726 0.0117 38 1 6.2282 -0.2459 0.0014 39 1 8.0672 1.2506 -0.5114 40 1 7.8340 3.0152 -0.5117 41 1 10.0265 2.4070 0.9328 42 1 9.4613 4.5184 2.8109 43 1 9.2372 3.9079 4.4818 44 1 12.6341 3.6114 5.5752 45 1 10.8819 3.4376 5.9150 46 1 10.9418 1.2590 5.1289 47 1 12.6933 1.4249 4.7892 48 1 13.2198 6.8517 2.6143 49 1 5.6693 3.9826 0.0011 50 1 3.2284 3.6643 0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098331770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:48 Heat of formation + Delta-G solvation = -28.210869 kcal Electronic energy + Delta-G solvation = -29820.169096 eV Core-core repulsion = 25812.836390 eV Total energy + Delta-G solvation = -4007.332706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41028 -40.98203 -39.88504 -38.41245 -35.19506 -34.37758 -33.56489 -32.24798 -31.78220 -30.93387 -30.42199 -29.49355 -27.58158 -26.05634 -24.95187 -23.45403 -22.86863 -22.06879 -21.50110 -21.00862 -20.23936 -19.23530 -18.81645 -17.91734 -17.36189 -17.06110 -17.02325 -16.75038 -16.20392 -15.97897 -15.63802 -15.45575 -15.26189 -14.78828 -14.47228 -14.44115 -14.35905 -14.14582 -13.70793 -13.65083 -13.38567 -13.02479 -12.89552 -12.80889 -12.78144 -12.73401 -12.63697 -12.49848 -12.45799 -12.07663 -11.94763 -11.88577 -11.67937 -11.66267 -11.61624 -11.17986 -10.92413 -10.90511 -10.60750 -9.93690 -9.86219 -9.04461 -8.84526 -7.73011 -5.12763 0.40524 0.43174 1.51159 1.51901 1.59779 1.77848 2.26685 2.37630 2.52498 2.88595 3.40178 3.46613 3.77313 3.82635 3.95283 4.02028 4.05416 4.10358 4.12615 4.16952 4.29308 4.33929 4.36662 4.43315 4.47578 4.51027 4.52465 4.65494 4.68457 4.73448 4.75507 4.85138 4.90821 4.93171 4.93768 5.09599 5.11241 5.18982 5.19648 5.21087 5.31069 5.38981 5.39969 5.54619 5.63803 5.66709 5.77202 5.83518 5.92119 6.29207 6.47426 6.75325 7.08247 7.40812 7.75185 8.61148 9.34301 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.002191 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.683937 B =12776.202294 C =13515.258140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.334 6.334 4 C 0.114 3.886 5 C -0.210 4.210 6 C -0.073 4.073 7 C -0.110 4.110 8 C -0.092 4.092 9 C 0.510 3.490 10 O -0.582 6.582 11 N -0.707 5.707 12 C 0.142 3.858 13 H 0.081 0.919 14 C -0.133 4.133 15 C 0.140 3.860 16 H 0.115 0.885 17 C -0.132 4.132 18 C -0.120 4.120 19 C 0.128 3.872 20 H 0.106 0.894 21 N -0.610 5.610 22 C -0.210 4.210 23 H 0.088 0.912 24 C -0.071 4.071 25 N -0.949 5.949 26 Si 0.975 3.025 27 H -0.289 1.289 28 H -0.304 1.304 29 H -0.271 1.271 30 C -0.078 4.078 31 C -0.167 4.167 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.407 0.593 42 H 0.033 0.967 43 H 0.060 0.940 44 H 0.038 0.962 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.244 0.756 49 H 0.132 0.868 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.994 -13.914 -6.527 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.069 3.931 5 C -0.229 4.229 6 C -0.091 4.091 7 C -0.111 4.111 8 C -0.131 4.131 9 C 0.298 3.702 10 O -0.463 6.463 11 N -0.356 5.356 12 C 0.035 3.965 13 H 0.099 0.901 14 C -0.173 4.173 15 C 0.033 3.967 16 H 0.132 0.868 17 C -0.172 4.172 18 C -0.159 4.159 19 C 0.021 3.979 20 H 0.124 0.876 21 N -0.332 5.332 22 C -0.338 4.338 23 H 0.105 0.895 24 C -0.263 4.263 25 N -0.599 5.599 26 Si 0.805 3.195 27 H -0.217 1.217 28 H -0.231 1.231 29 H -0.196 1.196 30 C -0.096 4.096 31 C -0.185 4.185 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.132 0.868 41 H 0.243 0.757 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.150 0.850 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.494 -13.672 -6.036 23.778 hybrid contribution 1.156 0.833 -0.611 1.550 sum -17.338 -12.839 -6.646 22.575 Atomic orbital electron populations 1.21807 0.91435 1.04205 1.03138 1.23062 0.96939 0.80828 1.02205 1.86042 1.18809 1.31330 1.88739 1.19139 0.82693 0.94479 0.96820 1.21406 0.94101 0.98682 1.08680 1.21046 0.94828 0.96918 0.96305 1.19391 0.94362 0.93712 1.03606 1.20644 0.92675 1.06911 0.92916 1.21104 0.81778 0.75193 0.92159 1.90666 1.55898 1.51849 1.47842 1.46005 1.08017 1.72458 1.09143 1.22352 0.95573 0.95991 0.82596 0.90090 1.23309 0.98613 0.96285 0.99139 1.23571 0.88352 0.98172 0.86563 0.86816 1.23006 0.99745 0.96372 0.98034 1.22872 1.01182 0.96155 0.95703 1.23450 0.89822 0.89085 0.95548 0.87614 1.46827 1.46092 1.04538 1.35714 1.19358 1.13564 0.93522 1.07398 0.89471 1.25445 1.02907 0.96313 1.01661 1.69726 1.47809 1.02156 1.40242 0.85115 0.78724 0.77265 0.78418 1.21680 1.23122 1.19595 1.21003 0.92435 0.99220 0.96986 1.20555 0.95327 0.95447 1.07202 0.88084 0.91712 0.92099 0.91569 0.90860 0.83488 0.84157 0.85307 0.86752 0.75736 0.94794 0.92179 0.94339 0.91388 0.90195 0.92104 0.94633 0.85032 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.04 0.63 5.46 71.98 0.39 1.02 16 3 O -0.33 -7.44 10.14 -92.39 -0.94 -8.37 16 4 C 0.11 2.75 6.69 22.51 0.15 2.90 16 5 C -0.21 -4.51 9.04 22.37 0.20 -4.31 16 6 C -0.07 -1.63 9.69 22.26 0.22 -1.42 16 7 C -0.11 -2.70 4.37 -19.85 -0.09 -2.79 16 8 C -0.09 -2.05 5.83 29.10 0.17 -1.88 16 9 C 0.51 15.76 7.82 87.66 0.69 16.44 16 10 O -0.58 -22.51 15.72 -3.04 -0.05 -22.56 16 11 N -0.71 -22.38 5.08 -434.91 -2.21 -24.59 16 12 C 0.14 5.02 2.75 46.61 0.13 5.15 16 13 H 0.08 2.86 7.29 -2.39 -0.02 2.84 16 14 C -0.13 -5.44 6.23 32.21 0.20 -5.24 16 15 C 0.14 6.41 4.72 46.23 0.22 6.63 16 16 H 0.11 6.19 5.52 -2.39 -0.01 6.18 16 17 C -0.13 -5.12 6.45 32.32 0.21 -4.91 16 18 C -0.12 -4.01 6.46 32.32 0.21 -3.80 16 19 C 0.13 4.62 5.07 46.14 0.23 4.85 16 20 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 21 N -0.61 -28.09 2.99 -614.17 -1.84 -29.93 16 22 C -0.21 -10.64 10.59 84.03 0.89 -9.75 16 23 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 24 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 25 N -0.95 -54.45 10.46 21.65 0.23 -54.23 16 26 Si 0.97 43.86 29.55 68.60 2.03 45.89 16 27 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 28 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 30 C -0.08 -1.99 9.69 22.26 0.22 -1.77 16 31 C -0.17 -4.18 9.99 22.37 0.22 -3.96 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.07 0.87 7.65 -2.39 -0.02 0.85 16 36 H 0.07 0.85 7.68 -2.39 -0.02 0.83 16 37 H 0.15 2.34 6.30 -2.91 -0.02 2.32 16 38 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.13 2.08 8.08 -2.39 -0.02 2.06 16 40 H 0.11 2.26 8.08 -2.39 -0.02 2.24 16 41 H 0.41 12.13 8.64 -92.70 -0.80 11.33 16 42 H 0.03 1.52 7.98 -2.39 -0.02 1.50 16 43 H 0.06 2.32 7.82 -2.38 -0.02 2.30 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.07 2.33 7.82 -2.38 -0.02 2.31 16 46 H 0.08 2.26 7.82 -2.39 -0.02 2.24 16 47 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 49 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 50 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -68.40 401.74 2.82 -65.58 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.14 Total: 35.18 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.46 Total: -6.96 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -3.82 Total: -108.75 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.98 Total: -30.93 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -68.40 2.82 -65.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098331770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.370 kcal (2) G-P(sol) polarization free energy of solvation -68.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds