Wall clock time and date at job start Wed Apr 1 2020 02:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47026 * 2 1 4 4 C 1.35895 * 117.00106 * 179.97438 * 3 2 1 5 5 C 1.38761 * 120.05442 * 0.02562 * 4 3 2 6 6 C 1.38127 * 119.94081 * 180.02562 * 5 4 3 7 7 C 1.38278 * 120.05882 * 0.02562 * 6 5 4 8 8 C 1.38248 * 120.11524 * 359.95999 * 7 6 5 9 9 C 1.50695 * 119.97748 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47371 * 89.99460 * 9 8 7 11 11 O 1.21286 * 119.99949 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00350 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00058 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.56023 * 34.30133 * 13 12 10 15 15 C 1.54857 * 110.62664 * 271.40080 * 13 12 10 16 16 C 1.55845 * 103.44400 * 241.35076 * 15 13 12 17 17 H 1.09000 * 115.56212 * 159.56429 * 16 15 13 18 18 C 1.55838 * 105.06620 * 288.17687 * 16 15 13 19 19 C 1.54857 * 103.44669 * 71.82508 * 18 16 15 20 20 C 1.55838 * 110.76084 * 157.29611 * 13 12 10 21 21 H 1.09004 * 115.56454 * 318.98977 * 20 13 12 22 22 N 1.50240 * 101.05175 * 32.93927 * 16 15 13 23 23 C 1.36935 * 130.83889 * 126.04557 * 22 16 15 24 24 H 1.08004 * 119.99844 * 180.02562 * 23 22 16 25 25 C 1.38810 * 120.00236 * 0.03318 * 23 22 16 26 26 N 1.31618 * 119.99865 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00380 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46580 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47066 * 119.99525 * 27 25 23 30 30 H 1.48498 * 109.46905 * 240.00137 * 27 25 23 31 31 C 1.38168 * 120.05005 * 0.27051 * 8 7 6 32 32 H 1.09000 * 109.47115 * 59.99547 * 1 2 3 33 33 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47517 * 300.00144 * 1 2 3 35 35 H 1.08996 * 109.47313 * 240.00459 * 2 1 3 36 36 H 1.08998 * 109.47212 * 119.99502 * 2 1 3 37 37 H 1.07999 * 120.02900 * 359.97438 * 5 4 3 38 38 H 1.08003 * 119.96507 * 180.02562 * 6 5 4 39 39 H 1.08002 * 119.94589 * 179.97438 * 7 6 5 40 40 H 1.09001 * 109.46602 * 330.00014 * 9 8 7 41 41 H 1.08993 * 109.47351 * 209.99984 * 9 8 7 42 42 H 0.97000 * 119.99908 * 0.02562 * 12 10 9 43 43 H 1.08994 * 110.62421 * 359.83866 * 15 13 12 44 44 H 1.08995 * 110.62373 * 122.70480 * 15 13 12 45 45 H 1.09004 * 110.63095 * 190.31229 * 18 16 15 46 46 H 1.09003 * 110.62882 * 313.33929 * 18 16 15 47 47 H 1.08997 * 110.62765 * 118.49314 * 19 18 16 48 48 H 1.08999 * 110.62588 * 241.50981 * 19 18 16 49 49 H 0.97001 * 119.99902 * 180.02562 * 26 25 23 50 50 H 1.08004 * 120.02481 * 179.74483 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6096 0.0016 7 6 6.0961 1.8879 0.0032 8 6 5.2551 2.9851 0.0030 9 6 5.8331 4.3768 0.0042 10 6 6.0272 4.8414 -1.4162 11 8 5.7255 4.1141 -2.3387 12 7 6.5361 6.0651 -1.6614 13 6 6.7243 6.5169 -3.0423 14 1 5.9374 6.1220 -3.6849 15 6 8.1194 6.0979 -3.5680 16 6 8.8103 7.4582 -3.8858 17 1 9.8988 7.4319 -3.9385 18 6 8.0882 7.9916 -5.1596 19 6 6.6932 8.4105 -4.6339 20 6 6.7624 8.0731 -3.1139 21 1 6.0391 8.5909 -2.4839 22 7 8.2127 8.3394 -2.8257 23 6 8.8069 9.1391 -1.8864 24 1 8.1986 9.7071 -1.1980 25 6 10.1910 9.2200 -1.8189 26 7 10.9323 8.5275 -2.6575 27 14 11.0016 10.3115 -0.5379 28 1 9.9551 10.9794 0.2769 29 1 11.8631 9.4837 0.3441 30 1 11.8308 11.3394 -1.2168 31 6 3.8850 2.8067 0.0067 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8933 -0.5137 -0.8900 36 1 1.8933 -0.5137 0.8900 37 1 3.7886 -0.5728 0.0005 38 1 6.2280 -0.2460 0.0012 39 1 7.1668 2.0294 0.0045 40 1 6.7938 4.3707 0.5189 41 1 5.1501 5.0535 0.5176 42 1 6.7778 6.6466 -0.9236 43 1 8.6722 5.5565 -2.8004 44 1 8.0241 5.4930 -4.4697 45 1 8.6180 8.8513 -5.5698 46 1 7.9960 7.2036 -5.9071 47 1 6.5311 9.4779 -4.7833 48 1 5.9093 7.8303 -5.1206 49 1 11.8995 8.5837 -2.6102 50 1 3.2284 3.6642 0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098470937.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:52 Heat of formation + Delta-G solvation = -11.150409 kcal Electronic energy + Delta-G solvation = -29939.473500 eV Core-core repulsion = 25932.880591 eV Total energy + Delta-G solvation = -4006.592909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.37543 -39.69554 -38.54788 -37.43164 -33.70265 -32.73142 -32.46580 -32.22621 -29.72881 -29.12488 -28.98584 -28.24751 -26.87215 -24.23743 -23.91148 -22.61450 -21.84639 -20.83081 -19.84119 -19.68271 -18.65906 -17.93900 -17.01470 -16.67602 -16.30196 -16.19604 -16.08136 -15.75160 -14.87759 -14.68909 -14.25911 -14.03120 -13.88444 -13.55930 -13.53585 -13.45041 -13.12980 -12.91918 -12.79738 -12.14135 -12.01949 -11.97779 -11.89699 -11.75832 -11.54946 -11.17945 -11.11327 -10.94994 -10.93974 -10.92201 -10.88177 -10.49623 -10.34876 -10.08701 -9.91993 -9.66749 -9.25343 -9.17435 -8.98170 -8.80605 -8.40639 -8.22853 -6.95799 -5.75934 -3.14898 1.25446 1.43709 2.98958 3.04364 3.34766 3.40042 3.42892 3.53067 3.93260 4.39276 4.57082 4.60054 4.66037 4.82020 4.88206 4.98675 5.07030 5.12886 5.24109 5.25918 5.33060 5.38007 5.41646 5.45223 5.55856 5.63985 5.66319 5.71456 5.73016 5.88332 5.98226 6.06660 6.13752 6.16174 6.22786 6.32832 6.37633 6.43654 6.51005 6.57090 6.61777 6.69636 6.76293 6.84165 6.96584 7.15440 7.31899 7.33938 7.46770 7.78725 8.04747 8.14862 8.68697 9.05935 9.69052 10.50615 11.33262 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.002294 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.383537 B =12200.250467 C =12872.496302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.128 3.872 5 C -0.213 4.213 6 C -0.080 4.080 7 C -0.141 4.141 8 C -0.018 4.018 9 C -0.107 4.107 10 C 0.511 3.489 11 O -0.544 6.544 12 N -0.707 5.707 13 C 0.130 3.870 14 H 0.077 0.923 15 C -0.142 4.142 16 C 0.156 3.844 17 H 0.151 0.849 18 C -0.139 4.139 19 C -0.128 4.128 20 C 0.126 3.874 21 H 0.087 0.913 22 N -0.590 5.590 23 C -0.213 4.213 24 H 0.079 0.921 25 C -0.011 4.011 26 N -0.919 5.919 27 Si 0.915 3.085 28 H -0.281 1.281 29 H -0.291 1.291 30 H -0.291 1.291 31 C -0.138 4.138 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.402 0.598 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.051 0.949 49 H 0.253 0.747 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.848 -14.498 5.636 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.083 3.917 5 C -0.231 4.231 6 C -0.098 4.098 7 C -0.159 4.159 8 C -0.018 4.018 9 C -0.147 4.147 10 C 0.297 3.703 11 O -0.422 6.422 12 N -0.356 5.356 13 C 0.023 3.977 14 H 0.095 0.905 15 C -0.183 4.183 16 C 0.049 3.951 17 H 0.168 0.832 18 C -0.179 4.179 19 C -0.168 4.168 20 C 0.017 3.983 21 H 0.105 0.895 22 N -0.311 5.311 23 C -0.341 4.341 24 H 0.097 0.903 25 C -0.207 4.207 26 N -0.567 5.567 27 Si 0.746 3.254 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 C -0.156 4.156 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.237 0.763 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.961 -14.716 5.133 21.605 hybrid contribution 0.669 0.564 0.909 1.262 sum -14.292 -14.153 6.042 21.002 Atomic orbital electron populations 1.21775 0.92830 1.02744 1.03578 1.22748 0.95787 0.82201 1.01293 1.86059 1.19235 1.29061 1.88855 1.18867 0.82048 0.94041 0.96763 1.21162 0.94458 0.97715 1.09792 1.20857 0.94248 0.97125 0.97576 1.20926 0.99791 0.92004 1.03202 1.19073 0.92262 0.94118 0.96372 1.20725 1.03577 0.94356 0.96023 1.20323 0.77535 0.81879 0.90592 1.90692 1.51088 1.54293 1.46078 1.46009 1.63498 1.16311 1.09832 1.22601 0.97425 0.96292 0.81349 0.90473 1.23449 0.95583 0.99752 0.99498 1.23684 1.00494 0.85935 0.84944 0.83222 1.23071 0.96017 0.99770 0.99021 1.22887 0.97205 1.00030 0.96720 1.23142 0.88953 0.91597 0.94571 0.89454 1.46518 0.98410 1.50145 1.36026 1.19041 0.89548 1.17967 1.07567 0.90350 1.24713 0.95907 1.00519 0.99565 1.69505 1.04252 1.44356 1.38551 0.85998 0.79277 0.79667 0.80505 1.20607 1.21853 1.21861 1.20201 0.94484 0.94852 1.06101 0.91462 0.90461 0.91542 0.92097 0.92177 0.85854 0.85867 0.85910 0.87680 0.87975 0.76323 0.92296 0.92938 0.92645 0.93344 0.92466 0.93020 0.93618 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.56 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.80 10.14 -19.41 -0.20 -4.00 16 4 C 0.13 1.64 6.69 -39.21 -0.26 1.38 16 5 C -0.21 -2.42 9.04 -39.43 -0.36 -2.78 16 6 C -0.08 -0.92 10.04 -39.61 -0.40 -1.31 16 7 C -0.14 -1.80 9.70 -39.56 -0.38 -2.19 16 8 C -0.02 -0.24 4.37 -104.65 -0.46 -0.69 16 9 C -0.11 -1.33 5.83 -29.04 -0.17 -1.50 16 10 C 0.51 8.41 7.82 -10.99 -0.09 8.33 16 11 O -0.54 -10.93 15.72 5.55 0.09 -10.84 16 12 N -0.71 -11.88 5.09 -51.40 -0.26 -12.14 16 13 C 0.13 2.42 2.76 -65.44 -0.18 2.24 16 14 H 0.08 1.47 7.29 -51.93 -0.38 1.09 16 15 C -0.14 -2.93 6.22 -24.23 -0.15 -3.08 16 16 C 0.16 3.54 4.69 -62.80 -0.29 3.24 16 17 H 0.15 3.90 5.57 -51.93 -0.29 3.61 16 18 C -0.14 -2.77 6.44 -24.24 -0.16 -2.92 16 19 C -0.13 -2.34 6.44 -24.23 -0.16 -2.49 16 20 C 0.13 2.43 5.06 -62.80 -0.32 2.11 16 21 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 22 N -0.59 -13.79 2.99 -145.82 -0.44 -14.23 16 23 C -0.21 -5.48 10.59 -15.06 -0.16 -5.64 16 24 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 26 N -0.92 -25.55 10.48 55.49 0.58 -24.97 16 27 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 31 C -0.14 -1.86 9.64 -39.43 -0.38 -2.24 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 36 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 37 H 0.12 1.09 6.30 -52.49 -0.33 0.76 16 38 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 41 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 42 H 0.40 6.40 8.64 -40.82 -0.35 6.05 16 43 H 0.06 1.30 7.98 -51.93 -0.41 0.89 16 44 H 0.05 1.02 7.82 -51.93 -0.41 0.62 16 45 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 49 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 50 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 401.75 15.07 6.05 6.05 Total: -1.00 -31.39 401.75 -10.58 -41.97 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -7.97 Total: 9.86 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.42 Total: -7.85 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.12 Total: -51.33 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.11 Total: -14.84 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.39 -10.58 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098470937.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.818 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds