Wall clock time and date at job start Wed Apr 1 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47026 * 2 1 4 4 C 1.35895 * 117.00106 * 179.97438 * 3 2 1 5 5 C 1.38761 * 120.05442 * 0.02562 * 4 3 2 6 6 C 1.38127 * 119.94081 * 180.02562 * 5 4 3 7 7 C 1.38278 * 120.05882 * 0.02562 * 6 5 4 8 8 C 1.38248 * 120.11524 * 359.95999 * 7 6 5 9 9 C 1.50695 * 119.97748 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47371 * 89.99460 * 9 8 7 11 11 O 1.21286 * 119.99949 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00350 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00058 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.56023 * 34.30133 * 13 12 10 15 15 C 1.54857 * 110.62664 * 271.40080 * 13 12 10 16 16 C 1.55845 * 103.44400 * 241.35076 * 15 13 12 17 17 H 1.09000 * 115.56212 * 159.56429 * 16 15 13 18 18 C 1.55838 * 105.06620 * 288.17687 * 16 15 13 19 19 C 1.54857 * 103.44669 * 71.82508 * 18 16 15 20 20 C 1.55838 * 110.76084 * 157.29611 * 13 12 10 21 21 H 1.09004 * 115.56454 * 318.98977 * 20 13 12 22 22 N 1.50240 * 101.05175 * 32.93927 * 16 15 13 23 23 C 1.36935 * 130.83889 * 126.04557 * 22 16 15 24 24 H 1.08004 * 119.99844 * 180.02562 * 23 22 16 25 25 C 1.38810 * 120.00236 * 0.03318 * 23 22 16 26 26 N 1.31618 * 119.99865 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00380 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46580 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47066 * 119.99525 * 27 25 23 30 30 H 1.48498 * 109.46905 * 240.00137 * 27 25 23 31 31 C 1.38168 * 120.05005 * 0.27051 * 8 7 6 32 32 H 1.09000 * 109.47115 * 59.99547 * 1 2 3 33 33 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47517 * 300.00144 * 1 2 3 35 35 H 1.08996 * 109.47313 * 240.00459 * 2 1 3 36 36 H 1.08998 * 109.47212 * 119.99502 * 2 1 3 37 37 H 1.07999 * 120.02900 * 359.97438 * 5 4 3 38 38 H 1.08003 * 119.96507 * 180.02562 * 6 5 4 39 39 H 1.08002 * 119.94589 * 179.97438 * 7 6 5 40 40 H 1.09001 * 109.46602 * 330.00014 * 9 8 7 41 41 H 1.08993 * 109.47351 * 209.99984 * 9 8 7 42 42 H 0.97000 * 119.99908 * 0.02562 * 12 10 9 43 43 H 1.08994 * 110.62421 * 359.83866 * 15 13 12 44 44 H 1.08995 * 110.62373 * 122.70480 * 15 13 12 45 45 H 1.09004 * 110.63095 * 190.31229 * 18 16 15 46 46 H 1.09003 * 110.62882 * 313.33929 * 18 16 15 47 47 H 1.08997 * 110.62765 * 118.49314 * 19 18 16 48 48 H 1.08999 * 110.62588 * 241.50981 * 19 18 16 49 49 H 0.97001 * 119.99902 * 180.02562 * 26 25 23 50 50 H 1.08004 * 120.02481 * 179.74483 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6096 0.0016 7 6 6.0961 1.8879 0.0032 8 6 5.2551 2.9851 0.0030 9 6 5.8331 4.3768 0.0042 10 6 6.0272 4.8414 -1.4162 11 8 5.7255 4.1141 -2.3387 12 7 6.5361 6.0651 -1.6614 13 6 6.7243 6.5169 -3.0423 14 1 5.9374 6.1220 -3.6849 15 6 8.1194 6.0979 -3.5680 16 6 8.8103 7.4582 -3.8858 17 1 9.8988 7.4319 -3.9385 18 6 8.0882 7.9916 -5.1596 19 6 6.6932 8.4105 -4.6339 20 6 6.7624 8.0731 -3.1139 21 1 6.0391 8.5909 -2.4839 22 7 8.2127 8.3394 -2.8257 23 6 8.8069 9.1391 -1.8864 24 1 8.1986 9.7071 -1.1980 25 6 10.1910 9.2200 -1.8189 26 7 10.9323 8.5275 -2.6575 27 14 11.0016 10.3115 -0.5379 28 1 9.9551 10.9794 0.2769 29 1 11.8631 9.4837 0.3441 30 1 11.8308 11.3394 -1.2168 31 6 3.8850 2.8067 0.0067 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8933 -0.5137 -0.8900 36 1 1.8933 -0.5137 0.8900 37 1 3.7886 -0.5728 0.0005 38 1 6.2280 -0.2460 0.0012 39 1 7.1668 2.0294 0.0045 40 1 6.7938 4.3707 0.5189 41 1 5.1501 5.0535 0.5176 42 1 6.7778 6.6466 -0.9236 43 1 8.6722 5.5565 -2.8004 44 1 8.0241 5.4930 -4.4697 45 1 8.6180 8.8513 -5.5698 46 1 7.9960 7.2036 -5.9071 47 1 6.5311 9.4779 -4.7833 48 1 5.9093 7.8303 -5.1206 49 1 11.8995 8.5837 -2.6102 50 1 3.2284 3.6642 0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098470937.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:51 Heat of formation + Delta-G solvation = -28.417462 kcal Electronic energy + Delta-G solvation = -29940.222256 eV Core-core repulsion = 25932.880591 eV Total energy + Delta-G solvation = -4007.341664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.44443 -40.99566 -39.90351 -38.41672 -35.22046 -34.39379 -33.62008 -32.88698 -30.95766 -30.66139 -30.41141 -29.67509 -28.10016 -26.08644 -24.65690 -23.52335 -23.13233 -21.92440 -21.50979 -21.02918 -20.25623 -18.87678 -18.80602 -17.95272 -17.20269 -17.07464 -17.01636 -16.99053 -16.73603 -15.97401 -15.64824 -15.50191 -15.22791 -14.80596 -14.49538 -14.41210 -14.15711 -14.05809 -13.72050 -13.65310 -13.40609 -13.04953 -12.89526 -12.82966 -12.80769 -12.74234 -12.63497 -12.57397 -12.40977 -12.07609 -11.92936 -11.86125 -11.72058 -11.68567 -11.63236 -11.19655 -10.93639 -10.93093 -10.65671 -9.88548 -9.78278 -9.13814 -8.85245 -7.73819 -5.13488 0.32516 0.50610 1.50430 1.51726 1.60476 1.74227 2.22830 2.37603 2.52174 2.88035 3.39767 3.46430 3.67232 3.86390 3.99326 4.05583 4.07233 4.09890 4.12010 4.16723 4.27183 4.29078 4.36518 4.39756 4.46995 4.50707 4.51281 4.63019 4.64490 4.72055 4.73068 4.84992 4.89427 4.92904 4.93874 5.08437 5.10729 5.18729 5.19942 5.20810 5.34531 5.39416 5.47032 5.54554 5.62912 5.63581 5.75570 5.82440 5.91985 6.27233 6.48585 6.72038 7.08058 7.37276 7.74622 8.60694 9.33981 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.002294 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.383537 B =12200.250467 C =12872.496302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.336 6.336 4 C 0.116 3.884 5 C -0.213 4.213 6 C -0.083 4.083 7 C -0.159 4.159 8 C -0.032 4.032 9 C -0.099 4.099 10 C 0.512 3.488 11 O -0.581 6.581 12 N -0.705 5.705 13 C 0.141 3.859 14 H 0.081 0.919 15 C -0.133 4.133 16 C 0.142 3.858 17 H 0.113 0.887 18 C -0.133 4.133 19 C -0.121 4.121 20 C 0.128 3.872 21 H 0.105 0.895 22 N -0.609 5.609 23 C -0.210 4.210 24 H 0.088 0.912 25 C -0.070 4.070 26 N -0.949 5.949 27 Si 0.974 3.026 28 H -0.265 1.265 29 H -0.298 1.298 30 H -0.302 1.302 31 C -0.158 4.158 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.408 0.592 43 H 0.034 0.966 44 H 0.060 0.940 45 H 0.038 0.962 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.079 0.921 49 H 0.244 0.756 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.846 -15.334 6.521 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.250 6.250 4 C 0.070 3.930 5 C -0.232 4.232 6 C -0.100 4.100 7 C -0.178 4.178 8 C -0.032 4.032 9 C -0.138 4.138 10 C 0.300 3.700 11 O -0.461 6.461 12 N -0.355 5.355 13 C 0.034 3.966 14 H 0.099 0.901 15 C -0.173 4.173 16 C 0.036 3.964 17 H 0.131 0.869 18 C -0.173 4.173 19 C -0.160 4.160 20 C 0.021 3.979 21 H 0.123 0.877 22 N -0.330 5.330 23 C -0.339 4.339 24 H 0.105 0.895 25 C -0.263 4.263 26 N -0.599 5.599 27 Si 0.805 3.195 28 H -0.189 1.189 29 H -0.226 1.226 30 H -0.230 1.230 31 C -0.177 4.177 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.243 0.757 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.054 0.946 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.005 -15.549 6.036 23.819 hybrid contribution 1.219 0.732 0.602 1.544 sum -15.785 -14.816 6.638 22.644 Atomic orbital electron populations 1.21810 0.91509 1.04216 1.03100 1.23065 0.96898 0.80778 1.02238 1.86046 1.18812 1.31411 1.88763 1.19071 0.82771 0.94338 0.96778 1.21472 0.94366 0.98560 1.08781 1.21207 0.94806 0.97519 0.96519 1.21167 1.00166 0.92657 1.03762 1.19207 0.92421 0.94613 0.96992 1.20732 1.05120 0.94530 0.93410 1.20954 0.76167 0.81029 0.91882 1.90671 1.52629 1.55166 1.47680 1.45975 1.63508 1.16773 1.09241 1.22370 0.95992 0.95733 0.82498 0.90131 1.23305 0.96353 0.98418 0.99227 1.23510 0.99098 0.87286 0.86529 0.86920 1.22972 0.96576 0.99612 0.98096 1.22848 0.96682 1.00718 0.95777 1.23341 0.87036 0.91911 0.95591 0.87716 1.46697 1.00446 1.49984 1.35855 1.19396 0.89772 1.17215 1.07477 0.89475 1.25445 0.96770 1.02375 1.01670 1.69756 1.03702 1.46137 1.40292 0.85048 0.78305 0.77774 0.78423 1.18896 1.22577 1.22966 1.20365 0.94755 0.95485 1.07053 0.92215 0.87994 0.91735 0.91498 0.90766 0.83365 0.83359 0.85440 0.86009 0.85414 0.75681 0.94678 0.92089 0.94325 0.91335 0.92136 0.90236 0.94616 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 71.98 0.74 -0.86 16 2 C 0.04 0.65 5.46 71.98 0.39 1.04 16 3 O -0.34 -7.73 10.14 -92.37 -0.94 -8.67 16 4 C 0.12 2.87 6.69 22.51 0.15 3.02 16 5 C -0.21 -4.49 9.04 22.37 0.20 -4.29 16 6 C -0.08 -1.76 10.04 22.25 0.22 -1.53 16 7 C -0.16 -3.92 9.70 22.28 0.22 -3.70 16 8 C -0.03 -0.82 4.37 -19.88 -0.09 -0.91 16 9 C -0.10 -2.31 5.83 29.10 0.17 -2.14 16 10 C 0.51 16.31 7.82 87.66 0.69 17.00 16 11 O -0.58 -23.02 15.72 -3.05 -0.05 -23.06 16 12 N -0.71 -22.81 5.09 -434.91 -2.21 -25.02 16 13 C 0.14 5.06 2.76 46.61 0.13 5.19 16 14 H 0.08 2.90 7.29 -2.39 -0.02 2.88 16 15 C -0.13 -5.44 6.22 32.21 0.20 -5.24 16 16 C 0.14 6.53 4.69 46.23 0.22 6.75 16 17 H 0.11 6.13 5.57 -2.39 -0.01 6.11 16 18 C -0.13 -5.18 6.44 32.21 0.21 -4.98 16 19 C -0.12 -4.11 6.44 32.21 0.21 -3.90 16 20 C 0.13 4.71 5.06 46.22 0.23 4.94 16 21 H 0.10 3.48 8.14 -2.38 -0.02 3.47 16 22 N -0.61 -28.17 2.99 -615.25 -1.84 -30.01 16 23 C -0.21 -10.70 10.59 84.03 0.89 -9.81 16 24 H 0.09 4.19 7.83 -2.91 -0.02 4.17 16 25 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 26 N -0.95 -54.44 10.48 21.65 0.23 -54.21 16 27 Si 0.97 43.95 29.55 68.60 2.03 45.98 16 28 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 29 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 30 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 31 C -0.16 -4.17 9.64 22.37 0.22 -3.96 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 36 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 37 H 0.15 2.24 6.30 -2.91 -0.02 2.23 16 38 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.12 2.44 8.08 -2.39 -0.02 2.42 16 41 H 0.13 2.31 8.08 -2.39 -0.02 2.29 16 42 H 0.41 12.37 8.64 -92.71 -0.80 11.56 16 43 H 0.03 1.57 7.98 -2.39 -0.02 1.55 16 44 H 0.06 2.35 7.82 -2.39 -0.02 2.33 16 45 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.07 2.35 7.82 -2.39 -0.02 2.34 16 47 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.08 2.30 7.82 -2.39 -0.02 2.28 16 49 H 0.24 13.81 8.31 -92.71 -0.77 13.04 16 50 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -68.86 401.75 2.82 -66.04 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: 0.14 Total: 35.64 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 5.46 Total: -6.68 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -3.82 Total: -109.24 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.98 Total: -31.73 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -68.86 2.82 -66.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098470937.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.621 kcal (2) G-P(sol) polarization free energy of solvation -68.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds